[Trilinos-Users] gcc 4.7 compile error for zoltan package

[Andrey Prokopenko]

@Ross

I'm using upstream.

@Nico

I saw that fix, and that is why I tried to insert inline keyword which
contradicts -ansi.
I didn't see any reference to fPIC, though.

Anyway, I'll try static.

On Mon, Aug 27, 2012 at 12:51 PM, Bartlett, Roscoe A.
<bartlettra at ornl.gov> wrote:
> What is the Trilinos version?  Is this Trilinos 10.12?
>
> -Ross
>
>
>> -----Original Message-----
>> From: andrey.prok at gmail.com [mailto:andrey.prok at gmail.com] On Behalf
>> Of Andrey Prokopenko
>> Sent: Monday, August 27, 2012 1:30 PM
>> To: Bartlett, Roscoe A.
>> Cc: Andre Massing; trilinos-users at software.sandia.gov
>> Subject: Re: [Trilinos-Users] gcc 4.7 compile error for zoltan package
>>
>> Hi Ross,
>>
>> I'm getting the following:
>>
>> /usr/bin/mpicc -Dzoltan_EXPORTS -ansi -pedantic -Wall -Wno-long-long
>> -fopenmp -O3 -fPIC <-I...> -c murmur3.c
>>
>> I'm not sure where does it come from. grep points to
>> tribits/package_arch, though.
>>
>> Also, it uses __attribute__ which is a GNU extension. I think Intel
>> compiler supports that but I am curious whether MS compiler supports
>> it
>>
>> Andrey
>>
>>
>>
>> On Mon, Aug 27, 2012 at 10:44 AM, Bartlett, Roscoe A.
>> <bartlettra at ornl.gov> wrote:
>> > Andre,
>> >
>> > The flag -ansi should not be added to the compile line in a release of Trilinos
>> (only in the development mode which should not be the default).  Can you
>> cd into the directory and type 'make VERBOSE=1 <the target>' and see what
>> compile options it is showing?  What is your configure line?  What Trilinos
>> release version is this?
>> >
>> > Otherwise, I believe that Trilinos does not assume the C99 standard, only
>> the C89/C90 standard, so such code would have to be changed or be
>> explicitly dependent on a C99 enable flag or something.  Trilinos needs a
>> more clear policy on assumed C standards and a clear way to allow some
>> code to require (or be conditionally enabled) for the C99 standard.
>> >
>> > -Ross
>> >
>> > Dr. Roscoe A. Bartlett, PhD
>> > Oak Ridge National Laboratories
>> > Trilinos Software Engineering Technologies and Integration Lead
>> > CASL Virtual Reactor Software Engineering Lead
>> >
>> >
>> >
>> >> -----Original Message-----
>> >> From: trilinos-users-bounces at software.sandia.gov [mailto:trilinos-users-
>> >> bounces at software.sandia.gov] On Behalf Of Andrey Prokopenko
>> >> Sent: Sunday, August 26, 2012 9:08 PM
>> >> To: Andre Massing
>> >> Cc: trilinos-users at software.sandia.gov
>> >> Subject: Re: [Trilinos-Users] gcc 4.7 compile error for zoltan package
>> >>
>> >> Hi,
>> >>
>> >>  I've also bumped into it, and also cannot access bugzilla. Some search
>> >>  showed that one of the problems was that you actually need to add
>> >>  inline keyword like
>> >>     inline __attribute__((always_inline))
>> >>
>> >>  But it seems that you cannot do that because you need at least C99 for
>> >>  inline keyword, but some configs in CMake or Makefile.am cause the
>> >>  code to be compiled -ansi, or -c90. The code in question seems to be
>> >>  in public domain, but I'm not sure about how easy is to modify it and
>> >>  what are the issues related to copyright. The easiest thing would be
>> >>  to require gcc < 4.7, or removed -ansi for compilation.
>> >>
>> >> On Sun, Aug 26, 2012 at 4:57 PM, Andre Massing <massing at simula.no>
>> >> wrote:
>> >> > -----BEGIN PGP SIGNED MESSAGE-----
>> >> > Hash: SHA1
>> >> >
>> >> > Hi!
>> >> >
>> >> > On 08/27/2012 12:41 AM, Nico Schlömer wrote:
>> >> >> Hi Andre,
>> >> >>
>> >> >> are you compiling shared libraries? I bumped into the same issue
>> >> >> this weekend with GCC 4.7.
>> >> >
>> >> > Yes, that happened when I compiled the shared libraries.
>> >> >
>> >> >> The bug is registered at
>> >> >> https://software.sandia.gov/bugzilla/show_bug.cgi?id=5680 where I
>> >> >> also submitted a patch, so I suppose it won't take long until this
>> >> >> is fixed.
>> >> >
>> >> > Many thanks for the pointer to the bug report! Unfortunately I cannot
>> >> > read it since I haven't a bugzilla account yet, but I will try to ask
>> >> > for one. Good to know that the problem has been reported already.
>> >> >
>> >> > Best,
>> >> > Andre
>> >> >
>> >> >>
>> >> >> --Nico
>> >> >>
>> >> >>
>> >> >> On Mon, Aug 27, 2012 at 12:25 AM, Andre Massing
>> <massing at simula.no>
>> >> >> wrote:
>> >> >>> Hi!
>> >> >>>
>> >> >>> I just tried to compile some of the newest trilinos packages and
>> >> >>> got the following compile error when zoltan was compiled on a
>> >> >>> Fedora 17 system using the gcc 4.7 compiler (after defining the
>> >> >>> FORCE_INLINE macro in the zoltan source, the package compiles
>> >> >>> fine, but I unsure what a proper fix should look like):
>> >> >>>
>> >> >>> [ 27%] Building C object
>> >> >>> packages/zoltan/src/CMakeFiles/zoltan.dir/zz/murmur3.c.o
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
>> >> >>>
>> >> >>>
>> >> > warning: always_inline function might not be inlinable [-Wattributes]
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:45:41:
>> >> >>>
>> >> >>>
>> >> > warning: always_inline function might not be inlinable [-Wattributes]
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
>> >> >>>
>> >> >>>
>> >> > In function ?MurmurHash3_x86_32?:
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:45:41:
>> >> >>>
>> >> >>>
>> >> > error: inlining failed in call to always_inline ?fmix32?: function
>> >> >>> body can be overwritten at link time
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:121:6:
>> >> >>>
>> >> >>>
>> >> > error: called from here
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
>> >> >>>
>> >> >>>
>> >> > In function ?MurmurHash3_x86_128?:
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
>> >> >>>
>> >> >>>
>> >> > error: inlining failed in call to always_inline ?fmix64?: function
>> >> >>> body can be overwritten at link time
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:218:14:
>> >> >>>
>> >> >>>
>> >> > error: called from here
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
>> >> >>>
>> >> >>>
>> >> > error: inlining failed in call to always_inline ?fmix64?: function
>> >> >>> body can be overwritten at link time
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:219:14:
>> >> >>>
>> >> >>>
>> >> > error: called from here
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
>> >> >>>
>> >> >>>
>> >> > error: inlining failed in call to always_inline ?fmix64?: function
>> >> >>> body can be overwritten at link time
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:220:14:
>> >> >>>
>> >> >>>
>> >> > error: called from here
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
>> >> >>>
>> >> >>>
>> >> > error: inlining failed in call to always_inline ?fmix64?: function
>> >> >>> body can be overwritten at link time
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:221:14:
>> >> >>>
>> >> >>>
>> >> > error: called from here
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
>> >> >>>
>> >> >>>
>> >> > In function ?MurmurHash3_x64_128?:
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
>> >> >>>
>> >> >>>
>> >> > error: inlining failed in call to always_inline ?fmix64?: function
>> >> >>> body can be overwritten at link time
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:304:6:
>> >> >>>
>> >> >>>
>> >> > error: called from here
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
>> >> >>>
>> >> >>>
>> >> > error: inlining failed in call to always_inline ?fmix64?: function
>> >> >>> body can be overwritten at link time
>> >> >>> /home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:305:6:
>> >> >>>
>> >> >>>
>> >> > error: called from here
>> >> >>> make[2]: ***
>> >> >>> [packages/zoltan/src/CMakeFiles/zoltan.dir/zz/murmur3.c.o] Error
>> >> >>> 1 make[2]: Leaving directory
>> >> >>> `/home/andre/Work/software/FEniCS-
>> dependencies/tmp/src/trilinos-
>> >> 10.12.2-Source/dorsal_build_dir'
>> >> >>>
>> >> >>>
>> >> > make[1]: *** [packages/zoltan/src/CMakeFiles/zoltan.dir/all] Error 2
>> >> >>>
>> >> >>>
>> >> >>> _______________________________________________
>> Trilinos-
>> >> Users
>> >> >>> mailing list Trilinos-Users at software.sandia.gov
>> >> >>> http://software.sandia.gov/mailman/listinfo/trilinos-users
>> >> >>>
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>> >> mI
>> >> >
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>> >> >
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>> >> >
>> >>
>> >>
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