[Trilinos-Users] gcc 4.7 compile error for zoltan package

Mon Aug 27 11:51:23 MDT 2012

What is the Trilinos version?  Is this Trilinos 10.12?

-Ross

> -----Original Message-----
> From: andrey.prok at gmail.com [mailto:andrey.prok at gmail.com] On Behalf
> Of Andrey Prokopenko
> Sent: Monday, August 27, 2012 1:30 PM
> To: Bartlett, Roscoe A.
> Cc: Andre Massing; trilinos-users at software.sandia.gov
> Subject: Re: [Trilinos-Users] gcc 4.7 compile error for zoltan package
> 
> Hi Ross,
> 
> I'm getting the following:
> 
> /usr/bin/mpicc -Dzoltan_EXPORTS -ansi -pedantic -Wall -Wno-long-long
> -fopenmp -O3 -fPIC <-I...> -c murmur3.c
> 
> I'm not sure where does it come from. grep points to
> tribits/package_arch, though.
> 
> Also, it uses __attribute__ which is a GNU extension. I think Intel
> compiler supports that but I am curious whether MS compiler supports
> it
> 
> Andrey
> 
> 
> 
> On Mon, Aug 27, 2012 at 10:44 AM, Bartlett, Roscoe A.
> <bartlettra at ornl.gov> wrote:
> > Andre,
> >
> > The flag -ansi should not be added to the compile line in a release of Trilinos
> (only in the development mode which should not be the default).  Can you
> cd into the directory and type 'make VERBOSE=1 <the target>' and see what
> compile options it is showing?  What is your configure line?  What Trilinos
> release version is this?
> >
> > Otherwise, I believe that Trilinos does not assume the C99 standard, only
> the C89/C90 standard, so such code would have to be changed or be
> explicitly dependent on a C99 enable flag or something.  Trilinos needs a
> more clear policy on assumed C standards and a clear way to allow some
> code to require (or be conditionally enabled) for the C99 standard.
> >
> > -Ross
> >
> > Dr. Roscoe A. Bartlett, PhD
> > Oak Ridge National Laboratories
> > Trilinos Software Engineering Technologies and Integration Lead
> > CASL Virtual Reactor Software Engineering Lead
> >
> >
> >
> >> -----Original Message-----
> >> From: trilinos-users-bounces at software.sandia.gov [mailto:trilinos-users-
> >> bounces at software.sandia.gov] On Behalf Of Andrey Prokopenko
> >> Sent: Sunday, August 26, 2012 9:08 PM
> >> To: Andre Massing
> >> Cc: trilinos-users at software.sandia.gov
> >> Subject: Re: [Trilinos-Users] gcc 4.7 compile error for zoltan package
> >>
> >> Hi,
> >>
> >>  I've also bumped into it, and also cannot access bugzilla. Some search
> >>  showed that one of the problems was that you actually need to add
> >>  inline keyword like
> >>     inline __attribute__((always_inline))
> >>
> >>  But it seems that you cannot do that because you need at least C99 for
> >>  inline keyword, but some configs in CMake or Makefile.am cause the
> >>  code to be compiled -ansi, or -c90. The code in question seems to be
> >>  in public domain, but I'm not sure about how easy is to modify it and
> >>  what are the issues related to copyright. The easiest thing would be
> >>  to require gcc < 4.7, or removed -ansi for compilation.
> >>
> >> On Sun, Aug 26, 2012 at 4:57 PM, Andre Massing <massing at simula.no>
> >> wrote:
> >> > -----BEGIN PGP SIGNED MESSAGE-----
> >> > Hash: SHA1
> >> >
> >> > Hi!
> >> >
> >> > On 08/27/2012 12:41 AM, Nico Schlömer wrote:
> >> >> Hi Andre,
> >> >>
> >> >> are you compiling shared libraries? I bumped into the same issue
> >> >> this weekend with GCC 4.7.
> >> >
> >> > Yes, that happened when I compiled the shared libraries.
> >> >
> >> >> The bug is registered at
> >> >> https://software.sandia.gov/bugzilla/show_bug.cgi?id=5680 where I
> >> >> also submitted a patch, so I suppose it won't take long until this
> >> >> is fixed.
> >> >
> >> > Many thanks for the pointer to the bug report! Unfortunately I cannot
> >> > read it since I haven't a bugzilla account yet, but I will try to ask
> >> > for one. Good to know that the problem has been reported already.
> >> >
> >> > Best,
> >> > Andre
> >> >
> >> >>
> >> >> --Nico
> >> >>
> >> >>
> >> >> On Mon, Aug 27, 2012 at 12:25 AM, Andre Massing
> <massing at simula.no>
> >> >> wrote:
> >> >>> Hi!
> >> >>>
> >> >>> I just tried to compile some of the newest trilinos packages and
> >> >>> got the following compile error when zoltan was compiled on a
> >> >>> Fedora 17 system using the gcc 4.7 compiler (after defining the
> >> >>> FORCE_INLINE macro in the zoltan source, the package compiles
> >> >>> fine, but I unsure what a proper fix should look like):
> >> >>>
> >> >>> [ 27%] Building C object
> >> >>> packages/zoltan/src/CMakeFiles/zoltan.dir/zz/murmur3.c.o
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> >> >>>
> >> >>>
> >> > warning: always_inline function might not be inlinable [-Wattributes]
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:45:41:
> >> >>>
> >> >>>
> >> > warning: always_inline function might not be inlinable [-Wattributes]
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
> >> >>>
> >> >>>
> >> > In function ?MurmurHash3_x86_32?:
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:45:41:
> >> >>>
> >> >>>
> >> > error: inlining failed in call to always_inline ?fmix32?: function
> >> >>> body can be overwritten at link time
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:121:6:
> >> >>>
> >> >>>
> >> > error: called from here
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
> >> >>>
> >> >>>
> >> > In function ?MurmurHash3_x86_128?:
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> >> >>>
> >> >>>
> >> > error: inlining failed in call to always_inline ?fmix64?: function
> >> >>> body can be overwritten at link time
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:218:14:
> >> >>>
> >> >>>
> >> > error: called from here
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> >> >>>
> >> >>>
> >> > error: inlining failed in call to always_inline ?fmix64?: function
> >> >>> body can be overwritten at link time
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:219:14:
> >> >>>
> >> >>>
> >> > error: called from here
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> >> >>>
> >> >>>
> >> > error: inlining failed in call to always_inline ?fmix64?: function
> >> >>> body can be overwritten at link time
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:220:14:
> >> >>>
> >> >>>
> >> > error: called from here
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> >> >>>
> >> >>>
> >> > error: inlining failed in call to always_inline ?fmix64?: function
> >> >>> body can be overwritten at link time
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:221:14:
> >> >>>
> >> >>>
> >> > error: called from here
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
> >> >>>
> >> >>>
> >> > In function ?MurmurHash3_x64_128?:
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> >> >>>
> >> >>>
> >> > error: inlining failed in call to always_inline ?fmix64?: function
> >> >>> body can be overwritten at link time
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:304:6:
> >> >>>
> >> >>>
> >> > error: called from here
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> >> >>>
> >> >>>
> >> > error: inlining failed in call to always_inline ?fmix64?: function
> >> >>> body can be overwritten at link time
> >> >>> /home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:305:6:
> >> >>>
> >> >>>
> >> > error: called from here
> >> >>> make[2]: ***
> >> >>> [packages/zoltan/src/CMakeFiles/zoltan.dir/zz/murmur3.c.o] Error
> >> >>> 1 make[2]: Leaving directory
> >> >>> `/home/andre/Work/software/FEniCS-
> dependencies/tmp/src/trilinos-
> >> 10.12.2-Source/dorsal_build_dir'
> >> >>>
> >> >>>
> >> > make[1]: *** [packages/zoltan/src/CMakeFiles/zoltan.dir/all] Error 2
> >> >>>
> >> >>>
> >> >>> _______________________________________________
> Trilinos-
> >> Users
> >> >>> mailing list Trilinos-Users at software.sandia.gov
> >> >>> http://software.sandia.gov/mailman/listinfo/trilinos-users
> >> >>>
> >> > -----BEGIN PGP SIGNATURE-----
> >> > Version: GnuPG v1.4.12 (GNU/Linux)
> >> > Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
> >> >
> >> >
> >>
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> >> mI
> >> >
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> >> =
> >> > =lBif
> >> > -----END PGP SIGNATURE-----
> >> >
> >> >
> >> > _______________________________________________
> >> > Trilinos-Users mailing list
> >> > Trilinos-Users at software.sandia.gov
> >> > http://software.sandia.gov/mailman/listinfo/trilinos-users
> >> >
> >>
> >>
> >> _______________________________________________
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> >> Trilinos-Users at software.sandia.gov
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> >