[Trilinos-Users] gcc 4.7 compile error for zoltan package
Andre Massing
massing at simula.no
Mon Aug 27 13:53:08 MDT 2012
On Mon, 2012-08-27 at 19:45 +0200, Nico Schlömer wrote:
> Quoting from the bug report, since not everyone has access :/
>
> "The same issue has been fixed for another software,
> https://github.com/zfsonlinux/zfs/commit/10be533e3344f523e1b8d6ab4f0658897a95ac02,
> cf. ."
>
> The issue doesn't seem to be -ansi, but rather -fPIC.
> Nevertheless, -ansi shouldn't be there either, but this is separate issue.
Thanks for citing the bug report. That explains our difficulties to
compile zoltan since we also use the -fPIC flag (CGAL as part of the
DOLFIN fem library requires that flag)
--
Andre
>
> If you need your code to compile right now, you can go for static
> Trilinos libraries.
>
> --Nico
>
>
> On Mon, Aug 27, 2012 at 7:30 PM, Andrey Prokopenko <prok12358 at gmail.com> wrote:
> > Hi Ross,
> >
> > I'm getting the following:
> >
> > /usr/bin/mpicc -Dzoltan_EXPORTS -ansi -pedantic -Wall -Wno-long-long
> > -fopenmp -O3 -fPIC <-I...> -c murmur3.c
> >
> > I'm not sure where does it come from. grep points to
> > tribits/package_arch, though.
> >
> > Also, it uses __attribute__ which is a GNU extension. I think Intel
> > compiler supports that but I am curious whether MS compiler supports
> > it
> >
> > Andrey
> >
> >
> >
> > On Mon, Aug 27, 2012 at 10:44 AM, Bartlett, Roscoe A.
> > <bartlettra at ornl.gov> wrote:
> >> Andre,
> >>
> >> The flag -ansi should not be added to the compile line in a release of Trilinos (only in the development mode which should not be the default). Can you cd into the directory and type 'make VERBOSE=1 <the target>' and see what compile options it is showing? What is your configure line? What Trilinos release version is this?
> >>
> >> Otherwise, I believe that Trilinos does not assume the C99 standard, only the C89/C90 standard, so such code would have to be changed or be explicitly dependent on a C99 enable flag or something. Trilinos needs a more clear policy on assumed C standards and a clear way to allow some code to require (or be conditionally enabled) for the C99 standard.
> >>
> >> -Ross
> >>
> >> Dr. Roscoe A. Bartlett, PhD
> >> Oak Ridge National Laboratories
> >> Trilinos Software Engineering Technologies and Integration Lead
> >> CASL Virtual Reactor Software Engineering Lead
> >>
> >>
> >>
> >>> -----Original Message-----
> >>> From: trilinos-users-bounces at software.sandia.gov [mailto:trilinos-users-
> >>> bounces at software.sandia.gov] On Behalf Of Andrey Prokopenko
> >>> Sent: Sunday, August 26, 2012 9:08 PM
> >>> To: Andre Massing
> >>> Cc: trilinos-users at software.sandia.gov
> >>> Subject: Re: [Trilinos-Users] gcc 4.7 compile error for zoltan package
> >>>
> >>> Hi,
> >>>
> >>> I've also bumped into it, and also cannot access bugzilla. Some search
> >>> showed that one of the problems was that you actually need to add
> >>> inline keyword like
> >>> inline __attribute__((always_inline))
> >>>
> >>> But it seems that you cannot do that because you need at least C99 for
> >>> inline keyword, but some configs in CMake or Makefile.am cause the
> >>> code to be compiled -ansi, or -c90. The code in question seems to be
> >>> in public domain, but I'm not sure about how easy is to modify it and
> >>> what are the issues related to copyright. The easiest thing would be
> >>> to require gcc < 4.7, or removed -ansi for compilation.
> >>>
> >>> On Sun, Aug 26, 2012 at 4:57 PM, Andre Massing <massing at simula.no>
> >>> wrote:
> >>> > -----BEGIN PGP SIGNED MESSAGE-----
> >>> > Hash: SHA1
> >>> >
> >>> > Hi!
> >>> >
> >>> > On 08/27/2012 12:41 AM, Nico Schlömer wrote:
> >>> >> Hi Andre,
> >>> >>
> >>> >> are you compiling shared libraries? I bumped into the same issue
> >>> >> this weekend with GCC 4.7.
> >>> >
> >>> > Yes, that happened when I compiled the shared libraries.
> >>> >
> >>> >> The bug is registered at
> >>> >> https://software.sandia.gov/bugzilla/show_bug.cgi?id=5680 where I
> >>> >> also submitted a patch, so I suppose it won't take long until this
> >>> >> is fixed.
> >>> >
> >>> > Many thanks for the pointer to the bug report! Unfortunately I cannot
> >>> > read it since I haven't a bugzilla account yet, but I will try to ask
> >>> > for one. Good to know that the problem has been reported already.
> >>> >
> >>> > Best,
> >>> > Andre
> >>> >
> >>> >>
> >>> >> --Nico
> >>> >>
> >>> >>
> >>> >> On Mon, Aug 27, 2012 at 12:25 AM, Andre Massing <massing at simula.no>
> >>> >> wrote:
> >>> >>> Hi!
> >>> >>>
> >>> >>> I just tried to compile some of the newest trilinos packages and
> >>> >>> got the following compile error when zoltan was compiled on a
> >>> >>> Fedora 17 system using the gcc 4.7 compiler (after defining the
> >>> >>> FORCE_INLINE macro in the zoltan source, the package compiles
> >>> >>> fine, but I unsure what a proper fix should look like):
> >>> >>>
> >>> >>> [ 27%] Building C object
> >>> >>> packages/zoltan/src/CMakeFiles/zoltan.dir/zz/murmur3.c.o
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> >>> >>>
> >>> >>>
> >>> > warning: always_inline function might not be inlinable [-Wattributes]
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:45:41:
> >>> >>>
> >>> >>>
> >>> > warning: always_inline function might not be inlinable [-Wattributes]
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
> >>> >>>
> >>> >>>
> >>> > In function ?MurmurHash3_x86_32?:
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:45:41:
> >>> >>>
> >>> >>>
> >>> > error: inlining failed in call to always_inline ?fmix32?: function
> >>> >>> body can be overwritten at link time
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:121:6:
> >>> >>>
> >>> >>>
> >>> > error: called from here
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
> >>> >>>
> >>> >>>
> >>> > In function ?MurmurHash3_x86_128?:
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> >>> >>>
> >>> >>>
> >>> > error: inlining failed in call to always_inline ?fmix64?: function
> >>> >>> body can be overwritten at link time
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:218:14:
> >>> >>>
> >>> >>>
> >>> > error: called from here
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> >>> >>>
> >>> >>>
> >>> > error: inlining failed in call to always_inline ?fmix64?: function
> >>> >>> body can be overwritten at link time
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:219:14:
> >>> >>>
> >>> >>>
> >>> > error: called from here
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> >>> >>>
> >>> >>>
> >>> > error: inlining failed in call to always_inline ?fmix64?: function
> >>> >>> body can be overwritten at link time
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:220:14:
> >>> >>>
> >>> >>>
> >>> > error: called from here
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> >>> >>>
> >>> >>>
> >>> > error: inlining failed in call to always_inline ?fmix64?: function
> >>> >>> body can be overwritten at link time
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:221:14:
> >>> >>>
> >>> >>>
> >>> > error: called from here
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
> >>> >>>
> >>> >>>
> >>> > In function ?MurmurHash3_x64_128?:
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> >>> >>>
> >>> >>>
> >>> > error: inlining failed in call to always_inline ?fmix64?: function
> >>> >>> body can be overwritten at link time
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:304:6:
> >>> >>>
> >>> >>>
> >>> > error: called from here
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> >>> >>>
> >>> >>>
> >>> > error: inlining failed in call to always_inline ?fmix64?: function
> >>> >>> body can be overwritten at link time
> >>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:305:6:
> >>> >>>
> >>> >>>
> >>> > error: called from here
> >>> >>> make[2]: ***
> >>> >>> [packages/zoltan/src/CMakeFiles/zoltan.dir/zz/murmur3.c.o] Error
> >>> >>> 1 make[2]: Leaving directory
> >>> >>> `/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> >>> 10.12.2-Source/dorsal_build_dir'
> >>> >>>
> >>> >>>
> >>> > make[1]: *** [packages/zoltan/src/CMakeFiles/zoltan.dir/all] Error 2
> >>> >>>
> >>> >>>
> >>> >>> _______________________________________________ Trilinos-
> >>> Users
> >>> >>> mailing list Trilinos-Users at software.sandia.gov
> >>> >>> http://software.sandia.gov/mailman/listinfo/trilinos-users
> >>> >>>
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> >>> > Version: GnuPG v1.4.12 (GNU/Linux)
> >>> > Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
> >>> >
> >>> >
> >>> iQEcBAEBAgAGBQJQOqnlAAoJEA79ggnbq9dmPukH/2EcEIYgymQIhrtT7TEC75
> >>> mI
> >>> >
> >>> nfgXEMBQXFtrE9FnAuQjbolRub451eohg2+xTI12wkF60jgNUoxl3RhDxMrrjlrS
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> >>> 9EYy1/kxv3m4tP2Mm8PV0WCPwE5ac3XX/qfJ6+poVGqIJy+8xugxjMCnfrfxv7
> >>> Lq
> >>> >
> >>> UbK3ryReHy/CZ2zLIReG+qcEVVEpv9HOeNP8Oemj050/2SdzU2sCUvHrWBQ7j
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> >>> nK+P4GQMKdgxz5/XljseqldPI7wqE3O/QE5hyG91UuD4fsTSsfh7fOEtPITjtfGP
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> >>> 07M31xLtcLChI6w3ZdArV/+3HvPJAz0Yse7zVnvkFd3U0wbMQB/Sl9g7S8ag4ro
> >>> =
> >>> > =lBif
> >>> > -----END PGP SIGNATURE-----
> >>> >
> >>> >
> >>> > _______________________________________________
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> >>> >
> >>>
> >>>
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