[Trilinos-Users] ctest -j4 error

Tommy Binford tbinford at gmail.com
Tue Apr 5 07:58:19 MDT 2011 

Chris,

I was able to reproduce this problem by using the do-configure
provided.  However,
changing the BLAS/LAPACK lines to

 -D TPL_LAPACK_LIBRARIES:STRING="-L/usr/lib -llapack" \
 -D TPL_BLAS_LIBRARIES:STRING="-L/usr/lib -lblas" \

made the failure go away.  I only tested this in Debian (Lenny) with the
standard Lapack and BLAS from Netlib.  A do-configure with K's script gives me
the following:

*********************************************

Configuring individual enabled Trilinos packages ...

Processing enabled package: Teuchos
-- Performing Test HAVE_GCC_ABI_DEMANGLE
-- Performing Test HAVE_GCC_ABI_DEMANGLE - Success
-- Performing Test HAVE_TEUCHOS_BLASFLOAT
-- Performing Test HAVE_TEUCHOS_BLASFLOAT - Failed
-- Performing Test CXX_COMPLEX_BLAS_WORKS
-- Performing Test CXX_COMPLEX_BLAS_WORKS - Failed
-- Performing Test HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM
-- Performing Test HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM - Failed
Processing enabled package: Sacado (tests, examples)
-- Performing Test HAS_C99_TR1_CMATH
-- Performing Test HAS_C99_TR1_CMATH - Failed
Processing enabled package: Epetra (tests, examples)
Processing enabled package: Shards (tests, examples)

*********************************************

Changing those two lines in the do-configure gives me

*********************************************

Configuring individual enabled Trilinos packages ...

Processing enabled package: Teuchos
-- Performing Test HAVE_GCC_ABI_DEMANGLE
-- Performing Test HAVE_GCC_ABI_DEMANGLE - Success
-- Performing Test HAVE_TEUCHOS_BLASFLOAT
-- Performing Test HAVE_TEUCHOS_BLASFLOAT - Success
-- Performing Test CXX_COMPLEX_BLAS_WORKS
-- Performing Test CXX_COMPLEX_BLAS_WORKS - Success
Processing enabled package: Sacado (tests, examples)
-- Performing Test HAS_C99_TR1_CMATH
-- Performing Test HAS_C99_TR1_CMATH - Failed
Processing enabled package: Epetra (tests, examples)
Processing enabled package: Shards (tests, examples)
Processing enabled package: Triutils (tests, examples)

*********************************************

Best,
Tommy



On Tue, Apr 5, 2011 at 6:53 AM, Baker, Christopher G. <bakercg at ornl.gov> wrote:
> It looks like there is a problem getting data out of the cdotc method from CBLAS. I'll get back to you ASAP.
> In the interim, you can
>
>  1.  ignore these errors, now that we understand what they are. You're okay as long as you don't need complex<float> support.
>  2.  switch to a different BLAS/LAPACK.
>
> Chris
>
>
> On 4/5/11 5:54 AM, "narendiran kumar" <narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>> wrote:
>
> Dear Sir,
>
> FYI, I have attached my "do-configure" script.
>
> My PC info.: Intel DG35EC, Intel Core 2 Quad Q8200, 2GB DDR2 800 x 2, 1TB HDD SATA
>
> Compilers :  gcc, g++, gfortran  Version : 4:4.4.4-1  (GNU compilers)
>
> I have downloaded BLAS/LAPACK form "trilinos hand on tutorial" link - Version : clapack-3.2.1-CMAKE
>
> thanks
>
> Regards,
> K. Narendiran
>
> On Tue, Apr 5, 2011 at 3:04 PM, Baker, Christopher G. <bakercg at ornl.gov<mailto:bakercg at ornl.gov>> wrote:
> That is good news.
>
> This test, CXX_COMPLEX_BLAS_WORKS, determines whether there is an incompatibility on the system regarding the interface for returning complex numbers from routines. Specifically, it determines whether the BLAS routine cdotc (single-precision complex dot product) operates as expected. If it doesn't (on OS X computers, for example; and in your case), then it employs a known fix (an alternate passing mechanism). However, in your case, that doesn't work either. That could be because of some other underlying problem with the BLAS, although I suspect not, because double-precision complex dot product seems to work (as evidenced by the passing tests in Anasazi_Tpetra_MVOPTester and Belos_Tpetra_MVOPTester). It seems to be limited to the single-precision routine.
>
> Which BLAS/LAPACK library are you using? Can you provide your ./do-configure script? What type of system do you have? What compilers/version are you using to build Trilinos, and if you built your own BLAS/LAPACK, what compilers/version did you use?
>
> Thanks,
> Chris
>
>
> On 4/5/11 5:14 AM, "narendiran kumar" <narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>>> wrote:
>
> Dear Sir,
>
> FYI, Also I have attached CMakeCache.txt file.  And also i have to mention one point that, while i tried "./do-configure", it shows that
>
>
> //Test CXX_COMPLEX_BLAS_WORKS
> CXX_COMPLEX_BLAS_WORKS:INTERNAL=
> //Result of TRY_COMPILE
> CXX_COMPLEX_BLAS_WORKS_COMPILED:INTERNAL=TRUE
> //Result of TRY_RUN
> CXX_COMPLEX_BLAS_WORKS_EXITCODE:INTERNAL=1
> //Test HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM
> HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM:INTERNAL=
> //Result of TRY_COMPILE
> HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM_COMPILED:INTERNAL=TRUE
> //Result of TRY_RUN
> HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM_EXITCODE:INTERNAL=1
>
>
>
> *** do-configure run time failed notices ****
>
> Configuring individual enabled Trilinos packages ...
>
> Processing enabled package: TrilinosFramework (tests, examples)
> Processing enabled package: Teuchos (tests, examples)
> -- Performing Test HAVE_GCC_ABI_DEMANGLE
> -- Performing Test HAVE_GCC_ABI_DEMANGLE - Success
> -- Performing Test HAVE_TEUCHOS_BLASFLOAT
> -- Performing Test HAVE_TEUCHOS_BLASFLOAT - Success
> -- Performing Test CXX_COMPLEX_BLAS_WORKS
> -- Performing Test CXX_COMPLEX_BLAS_WORKS - Failed
> -- Performing Test HAVE_FIXABLE_COMPLEX_BLAS_
> PROBLEM
> -- Performing Test HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM - Failed
> Processing enabled package: ThreadPool (tests, examples)
> Processing enabled package: Sacado (tests, examples)
> -- Performing Test HAS_C99_TR1_CMATH
> -- Performing Test HAS_C99_TR1_CMATH - Failed
> Processing enabled package: RTOp (tests, examples)
> Processing enabled package: Kokkos (tests, examples)
> Processing enabled package: Epetra (tests, examples)
> Processing enabled package: Zoltan (tests, examples)
> Processing enabled package: Shards (tests, examples)
> Processing enabled package: GlobiPack (tests, examples)
> Processing enabled package: Triutils (tests, examples)
> Processing enabled package: Tpetra (tests, examples)
> Processing enabled package: EpetraExt (tests, examples)
> Processing enabled package: Thyra (tests, examples)
> Processing enabled package: OptiPack (tests, examples)
> Processing enabled package: Isorropia (tests, examples)
> Processing enabled package: Pliris (tests, examples)
>    Building the double precision(default) library
> Processing enabled package: AztecOO (tests, examples)
> Processing enabled package: Galeri (tests, examples)
> Processing enabled package: Amesos (tests, examples)
> Processing enabled package: Pamgen (tests, examples)
> Processing enabled package: Ifpack (tests, examples)
> Processing enabled package: Komplex (tests, examples)
> Processing enabled package: ML (tests, examples)
> --   WARNING:  Setting ML_ENABLE_Zoltan=OFF since ML_ENABLE_MPI=OFF!
> Processing enabled package: Belos (tests, examples)
> Processing enabled package: Ifpack2 (tests, examples)
> Processing enabled package: Stratimikos (tests, examples)
> Processing enabled package: FEI (tests, examples)
> Processing enabled package: Anasazi (tests, examples)
> Processing enabled package: Intrepid (tests, examples)
> Processing enabled package: NOX (tests, examples)
> Processing enabled package: Moertel (tests, examples)
> -- HAVE_MOERTEL_EXODUS=''
> Processing enabled package: Rythmos (tests, examples)
> Processing enabled package: MOOCHO (tests, examples)
> Processing enabled package: Mesquite (tests, examples)
> -- Looking for times
> -- Looking for times - found
> -- Looking for clock
> -- Looking for clock - found
> -- Looking for cbrt
> -- Looking for cbrt - not found
> -- Looking for vsnprintf
> -- Looking for vsnprintf - found
> -- Looking for vsprintf
> -- Looking for vsprintf - found
> -- Looking for finite
> -- Looking for finite - found
> -- Looking for _Isfinite
> -- Looking for _Isfinite - not found
> -- Looking for ieeefp.h
> -- Looking for ieeefp.h - not found
> -- Looking for ieeefp.h
> -- Looking for ieeefp.h - not found
> -- Looking for inttypes.h
> -- Looking for inttypes.h - found
> -- Looking for termios.h
> -- Looking for termios.h - found
> -- Looking for sys/ioctl.h
> -- Looking for sys/ioctl.h - found
> -- Looking for dlfcn.h
> -- Looking for dlfcn.h - found
> -- Looking for fcntl.h
> -- Looking for fcntl.h - found
>
> Exporting library dependencies ...
>
> -- Configuring done
> -- Generating done
> -- Build files have been written to: /home/narendiran/Downloads/trilinos-10.6.3-Build
> root at narendiran:/home/narendiran/Downloads/trilinos-10.6.3-Build#
>
>
>
>
> Thanks
>
> Regards,
> K. Narendiran
>
> On Tue, Apr 5, 2011 at 2:28 PM, Baker, Christopher G. <bakercg at ornl.gov<mailto:bakercg at ornl.gov><mailto:bakercg at ornl.gov<mailto:bakercg at ornl.gov>>> wrote:
> Narendiran,
>
> Could you send me the output from your configuration? It would be the CMakeCache.txt in the top of your build directory. Specifically, I am interested in seeing the following:
> [zan:~/TBUILDS/TPETRA_GPU] ogb% grep COMPLEX_BLAS CMakeCache.txt
> //Test CXX_COMPLEX_BLAS_WORKS
> CXX_COMPLEX_BLAS_WORKS:INTERNAL=
> CXX_COMPLEX_BLAS_WORKS_COMPILED:INTERNAL=TRUE
> CXX_COMPLEX_BLAS_WORKS_EXITCODE:INTERNAL=FAILED_TO_RUN
> //Test HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM
> HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM:INTERNAL=1
> HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM_COMPILED:INTERNAL=TRUE
> HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM_EXITCODE:INTERNAL=0
>
> Thanks,
> Chris
>
> On 4/5/11 1:01 AM, "narendiran kumar" <narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>>>> wrote:
>
> Dear Sir/Madam,
>
> This two files (*_Tpetra_MVOPTester) are giving error while i tried to ctest. And also i have attached that error file.
>
> Please help me.
>
>
>
> root at narendiran:/home2/trilinos-10.6.3-Source/build# ctest -R ^Anasazi_Tpetra_MVOPTester$ -VV
>
>
> The following tests FAILED:
> 487:     4. MultiVector_int_int_ComplexFloat_MVTestDist_UnitTest ...
> 487:
> 487: Total Time: 0.895 sec
> 487:
> 487: Summary: total = 16, run = 16, passed = 15, failed = 1
> 487:
> 487: End Result: TEST FAILED
> 1/1 Test #487: Anasazi_Tpetra_MVOPTester ........***Failed    1.01 sec
>
> 0% tests passed, 1 tests failed out of 1
>
> root at narendiran:/home2/trilinos-10.6.3-Source/build# ctest -R ^Belos_Tpetra_MVOPTester_complex_test$ -VV
>
> The following tests FAILED:
> 406:     4. MultiVector_int_int_ComplexFloat_MVTestDist_UnitTest ...
> 406:     5. MultiVector_int_int_ComplexFloat_MVTestLocal_UnitTest ...
> 406:
> 406: Total Time: 0.897 sec
> 406:
> 406: Summary: total = 16, run = 16, passed = 14, failed = 2
> 406:
> 406: End Result: TEST FAILED
> 1/1 Test #406: Belos_Tpetra_MVOPTester_complex_test ...***Failed    1.00 sec
>
> 0% tests passed, 1 tests failed out of 1
>
> -Narendiran
>
>
>
>
> On Mon, Apr 4, 2011 at 11:10 PM, Bartlett, Roscoe A <rabartl at sandia.gov<mailto:rabartl at sandia.gov><mailto:rabartl at sandia.gov<mailto:rabartl at sandia.gov>><mailto:rabartl at sandia.gov<mailto:rabartl at sandia.gov><mailto:rabartl at sandia.gov<mailto:rabartl at sandia.gov>>>> wrote:
> See info on running CTest at:
>
>  http://trilinos.sandia.gov/Trilinos10CMakeQuickstart.txt
>
> in the section "E) Testing with CTest".
>
> -Ross
>
>
>> -----Original Message-----
>> From: trilinos-users-bounces at software.sandia.gov<mailto:trilinos-users-bounces at software.sandia.gov><mailto:trilinos-users-bounces at software.sandia.gov<mailto:trilinos-users-bounces at software.sandia.gov>><mailto:trilinos-users-bounces at software.sandia.gov<mailto:trilinos-users-bounces at software.sandia.gov><mailto:trilinos-users-bounces at software.sandia.gov<mailto:trilinos-users-bounces at software.sandia.gov>>> [mailto:trilinos-<mailto:trilinos-><mailto:trilinos-<mailto:trilinos->><mailto:trilinos-<mailto:trilinos-><mailto:trilinos-<mailto:trilinos->>>
>> users-bounces at software.sandia.gov<mailto:users-bounces at software.sandia.gov><mailto:users-bounces at software.sandia.gov<mailto:users-bounces at software.sandia.gov>><mailto:users-bounces at software.sandia.gov<mailto:users-bounces at software.sandia.gov><mailto:users-bounces at software.sandia.gov<mailto:users-bounces at software.sandia.gov>>>] On Behalf Of Baker, Christopher G.
>> Sent: Monday, April 04, 2011 11:31 AM
>> To: narendiran kumar; trilinos-users at software.sandia.gov<mailto:trilinos-users at software.sandia.gov><mailto:trilinos-users at software.sandia.gov<mailto:trilinos-users at software.sandia.gov>><mailto:trilinos-users at software.sandia.gov<mailto:trilinos-users at software.sandia.gov><mailto:trilinos-users at software.sandia.gov<mailto:trilinos-users at software.sandia.gov>>>
>> Subject: Re: [Trilinos-Users] ctest -j4 error
>>
>> Would you mind trying without "-j4"? If you want to shorten the amount
>> of time for testing, you can run the failing tests (plus a few others)
>> via:
>> ctest -R ".*MVOPTester"
>>
>> Thank you.
>> Chris
>>
>> On 4/4/11 12:25 PM, "narendiran kumar"
>> <narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>>><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>>>>> wrote:
>>
>> Dear Sir/Madam,
>>
>> While i was tried "ctest -j4", i got 2 test fail notices.  Can i
>> further continue or else i have to solve this problem.
>>
>> Please help me.
>>
>> Regards,
>> K. Narendiran
>>
>>
>> 99% tests passed, 2 tests failed out of 730
>>
>> Label Time Summary:
>> Amesos     =  33.21 sec
>> Anasazi    =  85.77 sec
>> AztecOO    =   0.90 sec
>> Belos      =  58.37 sec
>> Epetra     =  24.68 sec
>> Komplex    =   0.21 sec
>> MOOCHO     = 356.29 sec
>> NOX        = 165.30 sec
>> Piro       =   4.91 sec
>> Rythmos    = 219.58 sec
>> Sacado     =  38.80 sec
>> Stokhos    =  67.40 sec
>> Teuchos    =  10.27 sec
>>
>> Total Test time (real) = 267.43 sec
>>
>> The following tests FAILED:
>>     487 - Anasazi_Tpetra_MVOPTester (Failed)
>>     406 - Belos_Tpetra_MVOPTester_complex_test (Failed)
>> Errors while running CTest
>>
>>
>>
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