[Trilinos-Users] ctest -j4 error
Baker, Christopher G.
bakercg at ornl.gov
Tue Apr 5 05:53:10 MDT 2011
It looks like there is a problem getting data out of the cdotc method from CBLAS. I'll get back to you ASAP.
In the interim, you can
1. ignore these errors, now that we understand what they are. You're okay as long as you don't need complex<float> support.
2. switch to a different BLAS/LAPACK.
Chris
On 4/5/11 5:54 AM, "narendiran kumar" <narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>> wrote:
Dear Sir,
FYI, I have attached my "do-configure" script.
My PC info.: Intel DG35EC, Intel Core 2 Quad Q8200, 2GB DDR2 800 x 2, 1TB HDD SATA
Compilers : gcc, g++, gfortran Version : 4:4.4.4-1 (GNU compilers)
I have downloaded BLAS/LAPACK form "trilinos hand on tutorial" link - Version : clapack-3.2.1-CMAKE
thanks
Regards,
K. Narendiran
On Tue, Apr 5, 2011 at 3:04 PM, Baker, Christopher G. <bakercg at ornl.gov<mailto:bakercg at ornl.gov>> wrote:
That is good news.
This test, CXX_COMPLEX_BLAS_WORKS, determines whether there is an incompatibility on the system regarding the interface for returning complex numbers from routines. Specifically, it determines whether the BLAS routine cdotc (single-precision complex dot product) operates as expected. If it doesn't (on OS X computers, for example; and in your case), then it employs a known fix (an alternate passing mechanism). However, in your case, that doesn't work either. That could be because of some other underlying problem with the BLAS, although I suspect not, because double-precision complex dot product seems to work (as evidenced by the passing tests in Anasazi_Tpetra_MVOPTester and Belos_Tpetra_MVOPTester). It seems to be limited to the single-precision routine.
Which BLAS/LAPACK library are you using? Can you provide your ./do-configure script? What type of system do you have? What compilers/version are you using to build Trilinos, and if you built your own BLAS/LAPACK, what compilers/version did you use?
Thanks,
Chris
On 4/5/11 5:14 AM, "narendiran kumar" <narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>>> wrote:
Dear Sir,
FYI, Also I have attached CMakeCache.txt file. And also i have to mention one point that, while i tried "./do-configure", it shows that
//Test CXX_COMPLEX_BLAS_WORKS
CXX_COMPLEX_BLAS_WORKS:INTERNAL=
//Result of TRY_COMPILE
CXX_COMPLEX_BLAS_WORKS_COMPILED:INTERNAL=TRUE
//Result of TRY_RUN
CXX_COMPLEX_BLAS_WORKS_EXITCODE:INTERNAL=1
//Test HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM
HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM:INTERNAL=
//Result of TRY_COMPILE
HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM_COMPILED:INTERNAL=TRUE
//Result of TRY_RUN
HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM_EXITCODE:INTERNAL=1
*** do-configure run time failed notices ****
Configuring individual enabled Trilinos packages ...
Processing enabled package: TrilinosFramework (tests, examples)
Processing enabled package: Teuchos (tests, examples)
-- Performing Test HAVE_GCC_ABI_DEMANGLE
-- Performing Test HAVE_GCC_ABI_DEMANGLE - Success
-- Performing Test HAVE_TEUCHOS_BLASFLOAT
-- Performing Test HAVE_TEUCHOS_BLASFLOAT - Success
-- Performing Test CXX_COMPLEX_BLAS_WORKS
-- Performing Test CXX_COMPLEX_BLAS_WORKS - Failed
-- Performing Test HAVE_FIXABLE_COMPLEX_BLAS_
PROBLEM
-- Performing Test HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM - Failed
Processing enabled package: ThreadPool (tests, examples)
Processing enabled package: Sacado (tests, examples)
-- Performing Test HAS_C99_TR1_CMATH
-- Performing Test HAS_C99_TR1_CMATH - Failed
Processing enabled package: RTOp (tests, examples)
Processing enabled package: Kokkos (tests, examples)
Processing enabled package: Epetra (tests, examples)
Processing enabled package: Zoltan (tests, examples)
Processing enabled package: Shards (tests, examples)
Processing enabled package: GlobiPack (tests, examples)
Processing enabled package: Triutils (tests, examples)
Processing enabled package: Tpetra (tests, examples)
Processing enabled package: EpetraExt (tests, examples)
Processing enabled package: Thyra (tests, examples)
Processing enabled package: OptiPack (tests, examples)
Processing enabled package: Isorropia (tests, examples)
Processing enabled package: Pliris (tests, examples)
Building the double precision(default) library
Processing enabled package: AztecOO (tests, examples)
Processing enabled package: Galeri (tests, examples)
Processing enabled package: Amesos (tests, examples)
Processing enabled package: Pamgen (tests, examples)
Processing enabled package: Ifpack (tests, examples)
Processing enabled package: Komplex (tests, examples)
Processing enabled package: ML (tests, examples)
-- WARNING: Setting ML_ENABLE_Zoltan=OFF since ML_ENABLE_MPI=OFF!
Processing enabled package: Belos (tests, examples)
Processing enabled package: Ifpack2 (tests, examples)
Processing enabled package: Stratimikos (tests, examples)
Processing enabled package: FEI (tests, examples)
Processing enabled package: Anasazi (tests, examples)
Processing enabled package: Intrepid (tests, examples)
Processing enabled package: NOX (tests, examples)
Processing enabled package: Moertel (tests, examples)
-- HAVE_MOERTEL_EXODUS=''
Processing enabled package: Rythmos (tests, examples)
Processing enabled package: MOOCHO (tests, examples)
Processing enabled package: Mesquite (tests, examples)
-- Looking for times
-- Looking for times - found
-- Looking for clock
-- Looking for clock - found
-- Looking for cbrt
-- Looking for cbrt - not found
-- Looking for vsnprintf
-- Looking for vsnprintf - found
-- Looking for vsprintf
-- Looking for vsprintf - found
-- Looking for finite
-- Looking for finite - found
-- Looking for _Isfinite
-- Looking for _Isfinite - not found
-- Looking for ieeefp.h
-- Looking for ieeefp.h - not found
-- Looking for ieeefp.h
-- Looking for ieeefp.h - not found
-- Looking for inttypes.h
-- Looking for inttypes.h - found
-- Looking for termios.h
-- Looking for termios.h - found
-- Looking for sys/ioctl.h
-- Looking for sys/ioctl.h - found
-- Looking for dlfcn.h
-- Looking for dlfcn.h - found
-- Looking for fcntl.h
-- Looking for fcntl.h - found
Exporting library dependencies ...
-- Configuring done
-- Generating done
-- Build files have been written to: /home/narendiran/Downloads/trilinos-10.6.3-Build
root at narendiran:/home/narendiran/Downloads/trilinos-10.6.3-Build#
Thanks
Regards,
K. Narendiran
On Tue, Apr 5, 2011 at 2:28 PM, Baker, Christopher G. <bakercg at ornl.gov<mailto:bakercg at ornl.gov><mailto:bakercg at ornl.gov<mailto:bakercg at ornl.gov>>> wrote:
Narendiran,
Could you send me the output from your configuration? It would be the CMakeCache.txt in the top of your build directory. Specifically, I am interested in seeing the following:
[zan:~/TBUILDS/TPETRA_GPU] ogb% grep COMPLEX_BLAS CMakeCache.txt
//Test CXX_COMPLEX_BLAS_WORKS
CXX_COMPLEX_BLAS_WORKS:INTERNAL=
CXX_COMPLEX_BLAS_WORKS_COMPILED:INTERNAL=TRUE
CXX_COMPLEX_BLAS_WORKS_EXITCODE:INTERNAL=FAILED_TO_RUN
//Test HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM
HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM:INTERNAL=1
HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM_COMPILED:INTERNAL=TRUE
HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM_EXITCODE:INTERNAL=0
Thanks,
Chris
On 4/5/11 1:01 AM, "narendiran kumar" <narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>>>> wrote:
Dear Sir/Madam,
This two files (*_Tpetra_MVOPTester) are giving error while i tried to ctest. And also i have attached that error file.
Please help me.
root at narendiran:/home2/trilinos-10.6.3-Source/build# ctest -R ^Anasazi_Tpetra_MVOPTester$ -VV
The following tests FAILED:
487: 4. MultiVector_int_int_ComplexFloat_MVTestDist_UnitTest ...
487:
487: Total Time: 0.895 sec
487:
487: Summary: total = 16, run = 16, passed = 15, failed = 1
487:
487: End Result: TEST FAILED
1/1 Test #487: Anasazi_Tpetra_MVOPTester ........***Failed 1.01 sec
0% tests passed, 1 tests failed out of 1
root at narendiran:/home2/trilinos-10.6.3-Source/build# ctest -R ^Belos_Tpetra_MVOPTester_complex_test$ -VV
The following tests FAILED:
406: 4. MultiVector_int_int_ComplexFloat_MVTestDist_UnitTest ...
406: 5. MultiVector_int_int_ComplexFloat_MVTestLocal_UnitTest ...
406:
406: Total Time: 0.897 sec
406:
406: Summary: total = 16, run = 16, passed = 14, failed = 2
406:
406: End Result: TEST FAILED
1/1 Test #406: Belos_Tpetra_MVOPTester_complex_test ...***Failed 1.00 sec
0% tests passed, 1 tests failed out of 1
-Narendiran
On Mon, Apr 4, 2011 at 11:10 PM, Bartlett, Roscoe A <rabartl at sandia.gov<mailto:rabartl at sandia.gov><mailto:rabartl at sandia.gov<mailto:rabartl at sandia.gov>><mailto:rabartl at sandia.gov<mailto:rabartl at sandia.gov><mailto:rabartl at sandia.gov<mailto:rabartl at sandia.gov>>>> wrote:
See info on running CTest at:
http://trilinos.sandia.gov/Trilinos10CMakeQuickstart.txt
in the section "E) Testing with CTest".
-Ross
> -----Original Message-----
> From: trilinos-users-bounces at software.sandia.gov<mailto:trilinos-users-bounces at software.sandia.gov><mailto:trilinos-users-bounces at software.sandia.gov<mailto:trilinos-users-bounces at software.sandia.gov>><mailto:trilinos-users-bounces at software.sandia.gov<mailto:trilinos-users-bounces at software.sandia.gov><mailto:trilinos-users-bounces at software.sandia.gov<mailto:trilinos-users-bounces at software.sandia.gov>>> [mailto:trilinos-<mailto:trilinos-><mailto:trilinos-<mailto:trilinos->><mailto:trilinos-<mailto:trilinos-><mailto:trilinos-<mailto:trilinos->>>
> users-bounces at software.sandia.gov<mailto:users-bounces at software.sandia.gov><mailto:users-bounces at software.sandia.gov<mailto:users-bounces at software.sandia.gov>><mailto:users-bounces at software.sandia.gov<mailto:users-bounces at software.sandia.gov><mailto:users-bounces at software.sandia.gov<mailto:users-bounces at software.sandia.gov>>>] On Behalf Of Baker, Christopher G.
> Sent: Monday, April 04, 2011 11:31 AM
> To: narendiran kumar; trilinos-users at software.sandia.gov<mailto:trilinos-users at software.sandia.gov><mailto:trilinos-users at software.sandia.gov<mailto:trilinos-users at software.sandia.gov>><mailto:trilinos-users at software.sandia.gov<mailto:trilinos-users at software.sandia.gov><mailto:trilinos-users at software.sandia.gov<mailto:trilinos-users at software.sandia.gov>>>
> Subject: Re: [Trilinos-Users] ctest -j4 error
>
> Would you mind trying without "-j4"? If you want to shorten the amount
> of time for testing, you can run the failing tests (plus a few others)
> via:
> ctest -R ".*MVOPTester"
>
> Thank you.
> Chris
>
> On 4/4/11 12:25 PM, "narendiran kumar"
> <narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>>><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>>>>> wrote:
>
> Dear Sir/Madam,
>
> While i was tried "ctest -j4", i got 2 test fail notices. Can i
> further continue or else i have to solve this problem.
>
> Please help me.
>
> Regards,
> K. Narendiran
>
>
> 99% tests passed, 2 tests failed out of 730
>
> Label Time Summary:
> Amesos = 33.21 sec
> Anasazi = 85.77 sec
> AztecOO = 0.90 sec
> Belos = 58.37 sec
> Epetra = 24.68 sec
> Komplex = 0.21 sec
> MOOCHO = 356.29 sec
> NOX = 165.30 sec
> Piro = 4.91 sec
> Rythmos = 219.58 sec
> Sacado = 38.80 sec
> Stokhos = 67.40 sec
> Teuchos = 10.27 sec
>
> Total Test time (real) = 267.43 sec
>
> The following tests FAILED:
> 487 - Anasazi_Tpetra_MVOPTester (Failed)
> 406 - Belos_Tpetra_MVOPTester_complex_test (Failed)
> Errors while running CTest
>
>
>
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