[Trilinos-Users] ctest -j4 error

Baker, Christopher G. bakercg at ornl.gov
Tue Apr 5 08:03:51 MDT 2011 

Tommy,

I noticed the problem in the do-configure script. However, there is
actually a problem involving the cdotc() and cdotu() method. I have since
documented this on my own system.
Your correction fixed only a compile error particular to your system
(which is why your HAVE_TEUCHOS_BLASFLOAT fails and his succeeds).

Thanks,
Chris

On 4/5/11 9:58 AM, "Tommy Binford" <tbinford at gmail.com> wrote:

>Chris,
>
>I was able to reproduce this problem by using the do-configure
>provided.  However,
>changing the BLAS/LAPACK lines to
>
> -D TPL_LAPACK_LIBRARIES:STRING="-L/usr/lib -llapack" \
> -D TPL_BLAS_LIBRARIES:STRING="-L/usr/lib -lblas" \
>
>made the failure go away.  I only tested this in Debian (Lenny) with the
>standard Lapack and BLAS from Netlib.  A do-configure with K's script
>gives me
>the following:
>
>*********************************************
>
>Configuring individual enabled Trilinos packages ...
>
>Processing enabled package: Teuchos
>-- Performing Test HAVE_GCC_ABI_DEMANGLE
>-- Performing Test HAVE_GCC_ABI_DEMANGLE - Success
>-- Performing Test HAVE_TEUCHOS_BLASFLOAT
>-- Performing Test HAVE_TEUCHOS_BLASFLOAT - Failed
>-- Performing Test CXX_COMPLEX_BLAS_WORKS
>-- Performing Test CXX_COMPLEX_BLAS_WORKS - Failed
>-- Performing Test HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM
>-- Performing Test HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM - Failed
>Processing enabled package: Sacado (tests, examples)
>-- Performing Test HAS_C99_TR1_CMATH
>-- Performing Test HAS_C99_TR1_CMATH - Failed
>Processing enabled package: Epetra (tests, examples)
>Processing enabled package: Shards (tests, examples)
>
>*********************************************
>
>Changing those two lines in the do-configure gives me
>
>*********************************************
>
>Configuring individual enabled Trilinos packages ...
>
>Processing enabled package: Teuchos
>-- Performing Test HAVE_GCC_ABI_DEMANGLE
>-- Performing Test HAVE_GCC_ABI_DEMANGLE - Success
>-- Performing Test HAVE_TEUCHOS_BLASFLOAT
>-- Performing Test HAVE_TEUCHOS_BLASFLOAT - Success
>-- Performing Test CXX_COMPLEX_BLAS_WORKS
>-- Performing Test CXX_COMPLEX_BLAS_WORKS - Success
>Processing enabled package: Sacado (tests, examples)
>-- Performing Test HAS_C99_TR1_CMATH
>-- Performing Test HAS_C99_TR1_CMATH - Failed
>Processing enabled package: Epetra (tests, examples)
>Processing enabled package: Shards (tests, examples)
>Processing enabled package: Triutils (tests, examples)
>
>*********************************************
>
>Best,
>Tommy
>
>
>
>On Tue, Apr 5, 2011 at 6:53 AM, Baker, Christopher G. <bakercg at ornl.gov>
>wrote:
>> It looks like there is a problem getting data out of the cdotc method
>>from CBLAS. I'll get back to you ASAP.
>> In the interim, you can
>>
>>  1.  ignore these errors, now that we understand what they are. You're
>>okay as long as you don't need complex<float> support.
>>  2.  switch to a different BLAS/LAPACK.
>>
>> Chris
>>
>>
>> On 4/5/11 5:54 AM, "narendiran kumar"
>><narendirankumar at gmail.com<mailto:narendirankumar at gmail.com>> wrote:
>>
>> Dear Sir,
>>
>> FYI, I have attached my "do-configure" script.
>>
>> My PC info.: Intel DG35EC, Intel Core 2 Quad Q8200, 2GB DDR2 800 x 2,
>>1TB HDD SATA
>>
>> Compilers :  gcc, g++, gfortran  Version : 4:4.4.4-1  (GNU compilers)
>>
>> I have downloaded BLAS/LAPACK form "trilinos hand on tutorial" link -
>>Version : clapack-3.2.1-CMAKE
>>
>> thanks
>>
>> Regards,
>> K. Narendiran
>>
>> On Tue, Apr 5, 2011 at 3:04 PM, Baker, Christopher G.
>><bakercg at ornl.gov<mailto:bakercg at ornl.gov>> wrote:
>> That is good news.
>>
>> This test, CXX_COMPLEX_BLAS_WORKS, determines whether there is an
>>incompatibility on the system regarding the interface for returning
>>complex numbers from routines. Specifically, it determines whether the
>>BLAS routine cdotc (single-precision complex dot product) operates as
>>expected. If it doesn't (on OS X computers, for example; and in your
>>case), then it employs a known fix (an alternate passing mechanism).
>>However, in your case, that doesn't work either. That could be because
>>of some other underlying problem with the BLAS, although I suspect not,
>>because double-precision complex dot product seems to work (as evidenced
>>by the passing tests in Anasazi_Tpetra_MVOPTester and
>>Belos_Tpetra_MVOPTester). It seems to be limited to the single-precision
>>routine.
>>
>> Which BLAS/LAPACK library are you using? Can you provide your
>>./do-configure script? What type of system do you have? What
>>compilers/version are you using to build Trilinos, and if you built your
>>own BLAS/LAPACK, what compilers/version did you use?
>>
>> Thanks,
>> Chris
>>
>>
>> On 4/5/11 5:14 AM, "narendiran kumar"
>><narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:naren
>>dirankumar at gmail.com<mailto:narendirankumar at gmail.com>>> wrote:
>>
>> Dear Sir,
>>
>> FYI, Also I have attached CMakeCache.txt file.  And also i have to
>>mention one point that, while i tried "./do-configure", it shows that
>>
>>
>> //Test CXX_COMPLEX_BLAS_WORKS
>> CXX_COMPLEX_BLAS_WORKS:INTERNAL=
>> //Result of TRY_COMPILE
>> CXX_COMPLEX_BLAS_WORKS_COMPILED:INTERNAL=TRUE
>> //Result of TRY_RUN
>> CXX_COMPLEX_BLAS_WORKS_EXITCODE:INTERNAL=1
>> //Test HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM
>> HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM:INTERNAL=
>> //Result of TRY_COMPILE
>> HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM_COMPILED:INTERNAL=TRUE
>> //Result of TRY_RUN
>> HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM_EXITCODE:INTERNAL=1
>>
>>
>>
>> *** do-configure run time failed notices ****
>>
>> Configuring individual enabled Trilinos packages ...
>>
>> Processing enabled package: TrilinosFramework (tests, examples)
>> Processing enabled package: Teuchos (tests, examples)
>> -- Performing Test HAVE_GCC_ABI_DEMANGLE
>> -- Performing Test HAVE_GCC_ABI_DEMANGLE - Success
>> -- Performing Test HAVE_TEUCHOS_BLASFLOAT
>> -- Performing Test HAVE_TEUCHOS_BLASFLOAT - Success
>> -- Performing Test CXX_COMPLEX_BLAS_WORKS
>> -- Performing Test CXX_COMPLEX_BLAS_WORKS - Failed
>> -- Performing Test HAVE_FIXABLE_COMPLEX_BLAS_
>> PROBLEM
>> -- Performing Test HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM - Failed
>> Processing enabled package: ThreadPool (tests, examples)
>> Processing enabled package: Sacado (tests, examples)
>> -- Performing Test HAS_C99_TR1_CMATH
>> -- Performing Test HAS_C99_TR1_CMATH - Failed
>> Processing enabled package: RTOp (tests, examples)
>> Processing enabled package: Kokkos (tests, examples)
>> Processing enabled package: Epetra (tests, examples)
>> Processing enabled package: Zoltan (tests, examples)
>> Processing enabled package: Shards (tests, examples)
>> Processing enabled package: GlobiPack (tests, examples)
>> Processing enabled package: Triutils (tests, examples)
>> Processing enabled package: Tpetra (tests, examples)
>> Processing enabled package: EpetraExt (tests, examples)
>> Processing enabled package: Thyra (tests, examples)
>> Processing enabled package: OptiPack (tests, examples)
>> Processing enabled package: Isorropia (tests, examples)
>> Processing enabled package: Pliris (tests, examples)
>>    Building the double precision(default) library
>> Processing enabled package: AztecOO (tests, examples)
>> Processing enabled package: Galeri (tests, examples)
>> Processing enabled package: Amesos (tests, examples)
>> Processing enabled package: Pamgen (tests, examples)
>> Processing enabled package: Ifpack (tests, examples)
>> Processing enabled package: Komplex (tests, examples)
>> Processing enabled package: ML (tests, examples)
>> --   WARNING:  Setting ML_ENABLE_Zoltan=OFF since ML_ENABLE_MPI=OFF!
>> Processing enabled package: Belos (tests, examples)
>> Processing enabled package: Ifpack2 (tests, examples)
>> Processing enabled package: Stratimikos (tests, examples)
>> Processing enabled package: FEI (tests, examples)
>> Processing enabled package: Anasazi (tests, examples)
>> Processing enabled package: Intrepid (tests, examples)
>> Processing enabled package: NOX (tests, examples)
>> Processing enabled package: Moertel (tests, examples)
>> -- HAVE_MOERTEL_EXODUS=''
>> Processing enabled package: Rythmos (tests, examples)
>> Processing enabled package: MOOCHO (tests, examples)
>> Processing enabled package: Mesquite (tests, examples)
>> -- Looking for times
>> -- Looking for times - found
>> -- Looking for clock
>> -- Looking for clock - found
>> -- Looking for cbrt
>> -- Looking for cbrt - not found
>> -- Looking for vsnprintf
>> -- Looking for vsnprintf - found
>> -- Looking for vsprintf
>> -- Looking for vsprintf - found
>> -- Looking for finite
>> -- Looking for finite - found
>> -- Looking for _Isfinite
>> -- Looking for _Isfinite - not found
>> -- Looking for ieeefp.h
>> -- Looking for ieeefp.h - not found
>> -- Looking for ieeefp.h
>> -- Looking for ieeefp.h - not found
>> -- Looking for inttypes.h
>> -- Looking for inttypes.h - found
>> -- Looking for termios.h
>> -- Looking for termios.h - found
>> -- Looking for sys/ioctl.h
>> -- Looking for sys/ioctl.h - found
>> -- Looking for dlfcn.h
>> -- Looking for dlfcn.h - found
>> -- Looking for fcntl.h
>> -- Looking for fcntl.h - found
>>
>> Exporting library dependencies ...
>>
>> -- Configuring done
>> -- Generating done
>> -- Build files have been written to:
>>/home/narendiran/Downloads/trilinos-10.6.3-Build
>> root at narendiran:/home/narendiran/Downloads/trilinos-10.6.3-Build#
>>
>>
>>
>>
>> Thanks
>>
>> Regards,
>> K. Narendiran
>>
>> On Tue, Apr 5, 2011 at 2:28 PM, Baker, Christopher G.
>><bakercg at ornl.gov<mailto:bakercg at ornl.gov><mailto:bakercg at ornl.gov<mailto
>>:bakercg at ornl.gov>>> wrote:
>> Narendiran,
>>
>> Could you send me the output from your configuration? It would be the
>>CMakeCache.txt in the top of your build directory. Specifically, I am
>>interested in seeing the following:
>> [zan:~/TBUILDS/TPETRA_GPU] ogb% grep COMPLEX_BLAS CMakeCache.txt
>> //Test CXX_COMPLEX_BLAS_WORKS
>> CXX_COMPLEX_BLAS_WORKS:INTERNAL=
>> CXX_COMPLEX_BLAS_WORKS_COMPILED:INTERNAL=TRUE
>> CXX_COMPLEX_BLAS_WORKS_EXITCODE:INTERNAL=FAILED_TO_RUN
>> //Test HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM
>> HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM:INTERNAL=1
>> HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM_COMPILED:INTERNAL=TRUE
>> HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM_EXITCODE:INTERNAL=0
>>
>> Thanks,
>> Chris
>>
>> On 4/5/11 1:01 AM, "narendiran kumar"
>><narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:naren
>>dirankumar at gmail.com<mailto:narendirankumar at gmail.com>><mailto:narendiran
>>kumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar@
>>gmail.com<mailto:narendirankumar at gmail.com>>>> wrote:
>>
>> Dear Sir/Madam,
>>
>> This two files (*_Tpetra_MVOPTester) are giving error while i tried to
>>ctest. And also i have attached that error file.
>>
>> Please help me.
>>
>>
>>
>> root at narendiran:/home2/trilinos-10.6.3-Source/build# ctest -R
>>^Anasazi_Tpetra_MVOPTester$ -VV
>>
>>
>> The following tests FAILED:
>> 487:     4. MultiVector_int_int_ComplexFloat_MVTestDist_UnitTest ...
>> 487:
>> 487: Total Time: 0.895 sec
>> 487:
>> 487: Summary: total = 16, run = 16, passed = 15, failed = 1
>> 487:
>> 487: End Result: TEST FAILED
>> 1/1 Test #487: Anasazi_Tpetra_MVOPTester ........***Failed    1.01 sec
>>
>> 0% tests passed, 1 tests failed out of 1
>>
>> root at narendiran:/home2/trilinos-10.6.3-Source/build# ctest -R
>>^Belos_Tpetra_MVOPTester_complex_test$ -VV
>>
>> The following tests FAILED:
>> 406:     4. MultiVector_int_int_ComplexFloat_MVTestDist_UnitTest ...
>> 406:     5. MultiVector_int_int_ComplexFloat_MVTestLocal_UnitTest ...
>> 406:
>> 406: Total Time: 0.897 sec
>> 406:
>> 406: Summary: total = 16, run = 16, passed = 14, failed = 2
>> 406:
>> 406: End Result: TEST FAILED
>> 1/1 Test #406: Belos_Tpetra_MVOPTester_complex_test ...***Failed
>>1.00 sec
>>
>> 0% tests passed, 1 tests failed out of 1
>>
>> -Narendiran
>>
>>
>>
>>
>> On Mon, Apr 4, 2011 at 11:10 PM, Bartlett, Roscoe A
>><rabartl at sandia.gov<mailto:rabartl at sandia.gov><mailto:rabartl at sandia.gov<
>>mailto:rabartl at sandia.gov>><mailto:rabartl at sandia.gov<mailto:rabartl at sand
>>ia.gov><mailto:rabartl at sandia.gov<mailto:rabartl at sandia.gov>>>> wrote:
>> See info on running CTest at:
>>
>>  http://trilinos.sandia.gov/Trilinos10CMakeQuickstart.txt
>>
>> in the section "E) Testing with CTest".
>>
>> -Ross
>>
>>
>>> -----Original Message-----
>>> From:
>>>trilinos-users-bounces at software.sandia.gov<mailto:trilinos-users-bounces
>>>@software.sandia.gov><mailto:trilinos-users-bounces at software.sandia.gov<
>>>mailto:trilinos-users-bounces at software.sandia.gov>><mailto:trilinos-user
>>>s-bounces at software.sandia.gov<mailto:trilinos-users-bounces at software.san
>>>dia.gov><mailto:trilinos-users-bounces at software.sandia.gov<mailto:trilin
>>>os-users-bounces at software.sandia.gov>>>
>>>[mailto:trilinos-<mailto:trilinos-><mailto:trilinos-<mailto:trilinos->><
>>>mailto:trilinos-<mailto:trilinos-><mailto:trilinos-<mailto:trilinos->>>
>>>
>>>users-bounces at software.sandia.gov<mailto:users-bounces at software.sandia.g
>>>ov><mailto:users-bounces at software.sandia.gov<mailto:users-bounces at softwa
>>>re.sandia.gov>><mailto:users-bounces at software.sandia.gov<mailto:users-bo
>>>unces at software.sandia.gov><mailto:users-bounces at software.sandia.gov<mail
>>>to:users-bounces at software.sandia.gov>>>] On Behalf Of Baker,
>>>Christopher G.
>>> Sent: Monday, April 04, 2011 11:31 AM
>>> To: narendiran kumar;
>>>trilinos-users at software.sandia.gov<mailto:trilinos-users at software.sandia
>>>.gov><mailto:trilinos-users at software.sandia.gov<mailto:trilinos-users at so
>>>ftware.sandia.gov>><mailto:trilinos-users at software.sandia.gov<mailto:tri
>>>linos-users at software.sandia.gov><mailto:trilinos-users at software.sandia.g
>>>ov<mailto:trilinos-users at software.sandia.gov>>>
>>> Subject: Re: [Trilinos-Users] ctest -j4 error
>>>
>>> Would you mind trying without "-j4"? If you want to shorten the amount
>>> of time for testing, you can run the failing tests (plus a few others)
>>> via:
>>> ctest -R ".*MVOPTester"
>>>
>>> Thank you.
>>> Chris
>>>
>>> On 4/4/11 12:25 PM, "narendiran kumar"
>>>
>>><narendirankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:nare
>>>ndirankumar at gmail.com<mailto:narendirankumar at gmail.com>><mailto:narendir
>>>ankumar at gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankum
>>>ar at gmail.com<mailto:narendirankumar at gmail.com>>><mailto:narendirankumar@
>>>gmail.com<mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail
>>>.com<mailto:narendirankumar at gmail.com>><mailto:narendirankumar at gmail.com
>>><mailto:narendirankumar at gmail.com><mailto:narendirankumar at gmail.com<mail
>>>to:narendirankumar at gmail.com>>>>> wrote:
>>>
>>> Dear Sir/Madam,
>>>
>>> While i was tried "ctest -j4", i got 2 test fail notices.  Can i
>>> further continue or else i have to solve this problem.
>>>
>>> Please help me.
>>>
>>> Regards,
>>> K. Narendiran
>>>
>>>
>>> 99% tests passed, 2 tests failed out of 730
>>>
>>> Label Time Summary:
>>> Amesos     =  33.21 sec
>>> Anasazi    =  85.77 sec
>>> AztecOO    =   0.90 sec
>>> Belos      =  58.37 sec
>>> Epetra     =  24.68 sec
>>> Komplex    =   0.21 sec
>>> MOOCHO     = 356.29 sec
>>> NOX        = 165.30 sec
>>> Piro       =   4.91 sec
>>> Rythmos    = 219.58 sec
>>> Sacado     =  38.80 sec
>>> Stokhos    =  67.40 sec
>>> Teuchos    =  10.27 sec
>>>
>>> Total Test time (real) = 267.43 sec
>>>
>>> The following tests FAILED:
>>>     487 - Anasazi_Tpetra_MVOPTester (Failed)
>>>     406 - Belos_Tpetra_MVOPTester_complex_test (Failed)
>>> Errors while running CTest
>>>
>>>
>>>
>>> _______________________________________________
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>>>
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>>>ftware.sandia.gov>><mailto:Trilinos-Users at software.sandia.gov<mailto:Tri
>>>linos-Users at software.sandia.gov><mailto:Trilinos-Users at software.sandia.g
>>>ov<mailto:Trilinos-Users at software.sandia.gov>>>
>>> http://software.sandia.gov/mailman/listinfo/trilinos-users
>>
>>
>>
>>
>>
>>
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