[Trilinos-Users] Error while compiling trilinos-12.4.2 in Ubuntu14.04
Bruno Turcksin
bruno.turcksin at gmail.com
Wed Feb 17 11:48:41 EST 2016
Anil,
it looks like the problem is from HDF5. Did you compile it with mpi
support? If you have installed it with the package manager, make sure it is
not the serial version.
Best,
Bruno
2016-02-17 11:31 GMT-05:00 anil pathrikar <pathrikar.anil at gmail.com>:
> Respected Sir/Madam,
>
> I have been trying to install Trilinos-12.4.2 in the system having
> Ubuntu-12.4.2 but I am facing errors during compilation. I have been
> struggling from past two weeks to fix the error, but I couldn't make it. I
> request you to kindly suggest me some way to overcome these errors. Your
> help will be highly appreciated. I am pasting below the configuration
> script I am using and the errors I am getting. Requesting you to please
> help me install Trilinos in my system.
>
> Configuration Script:
>
> rm -f CMakeCache.txt
>
> cmake -D CMAKE_INSTALL_PREFIX:PATH=/usr/local/trilinos \
> -D MPI_BASE_DIR:PATH="/usr/local/openmpi/" \
> -D CMAKE_CXX_FLAGS:STRING="-O2 -std=c++11 -pedantic -ftrapv -Wall -Wno-long-long" \
> -D CMAKE_BUILD_TYPE:STRING=RELEASE \
> -D Trilinos_WARNINGS_AS_ERRORS_FLAGS:STRING="" \
> -D Trilinos_ENABLE_ALL_PACKAGES:BOOL=OFF \
> -D Trilinos_ENABLE_Teuchos:BOOL=ON \
> -D Trilinos_ENABLE_Shards:BOOL=ON \
> -D Trilinos_ENABLE_Sacado:BOOL=ON \
> -D Trilinos_ENABLE_Epetra:BOOL=ON \
> -D Trilinos_ENABLE_EpetraExt:BOOL=ON \
> -D Trilinos_ENABLE_Ifpack:BOOL=ON \
> -D Trilinos_ENABLE_AztecOO:BOOL=ON \
> -D Trilinos_ENABLE_Amesos:BOOL=ON \
> -D Trilinos_ENABLE_Anasazi:BOOL=ON \
> -D Trilinos_ENABLE_Belos:BOOL=ON \
> -D Trilinos_ENABLE_ML:BOOL=ON \
> -D Trilinos_ENABLE_Phalanx:BOOL=ON \
> -D Trilinos_ENABLE_Intrepid:BOOL=ON \
> -D Trilinos_ENABLE_NOX:BOOL=ON \
> -D Trilinos_ENABLE_Stratimikos:BOOL=ON \
> -D Trilinos_ENABLE_Thyra:BOOL=ON \
> -D Trilinos_ENABLE_Rythmos:BOOL=ON \
> -D Trilinos_ENABLE_MOOCHO:BOOL=ON \
> -D Trilinos_ENABLE_TriKota:BOOL=OFF \
> -D Trilinos_ENABLE_Stokhos:BOOL=ON \
> -D Trilinos_ENABLE_Zoltan:BOOL=ON \
> -D Trilinos_ENABLE_Piro:BOOL=ON \
> -D Trilinos_ENABLE_Teko:BOOL=ON \
> -D Trilinos_ENABLE_SEACASIoss:BOOL=ON \
> -D Trilinos_ENABLE_SEACAS:BOOL=ON \
> -D Trilinos_ENABLE_SEACASBlot:BOOL=ON \
> -D Trilinos_ENABLE_Pamgen:BOOL=ON \
> -D Trilinos_ENABLE_EXAMPLES:BOOL=OFF \
> -D Trilinos_ENABLE_TESTS:BOOL=ON \
> -D TPL_ENABLE_HDF5:BOOL=ON \
> -D HDF5_INCLUDE_DIRS:PATH="/usr/local/hdf5/include" \
> -D HDF5_LIBRARY_DIRS:PATH="/usr/local/hdf5/lib" \
> -D TPL_ENABLE_Netcdf:BOOL=ON \
> -D Netcdf_INCLUDE_DIRS:PATH=/usr/local/netcdf/include \
> -D Netcdf_LIBRARY_DIRS:PATH=/usr/local/netcdf/lib \
> -D TPL_ENABLE_MPI:BOOL=ON \
> -D TPL_ENABLE_BLAS:BOOL=ON \
> -D TPL_ENABLE_LAPACK:BOOL=ON \
> -D TPL_ENABLE_Boost:BOOL=ON \
> -D Boost_INCLUDE_DIRS:PATH=/usr/local/boost/include \
> -D Boost_LIBRARY_DIRS:PATH=/usr/local/boost/lib \
> -D CMAKE_VERBOSE_MAKEFILE:BOOL=OFF \
> -D Trilinos_VERBOSE_CONFIGURE:BOOL=OFF \
>
> Trilinos make log:
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> [ 15%] Built target Sacado_tradoptest_54_RE1
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> [ 16%] Built target Sacado_tradoptest_62_ADC
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> [ 16%] Built target Sacado_tradoptest_62_RE1
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> [ 17%] Built target Sacado_tradoptest_63_ADC
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> [ 17%] Built target Sacado_tradoptest_63_RE1
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> [ 17%] Built target Sacado_tradoptest_64_ADC
> [ 17%] Built target Sacado_tradoptest_64_EQA
> [ 17%] Built target Sacado_tradoptest_64_RE1
> [ 17%] Built target Sacado_tradoptest_64_RE2
> [ 17%] Built target Sacado_copyPythonScripts
> [ 17%] Built target Sacado_fad_blas
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> [ 36%] Building CXX object packages/epetraext/src/CMakeFiles/epetraext.dir/inout/EpetraExt_HDF5.cpp.o
> /home/droy/Desktop/Peridigm_Software/Softwares/trilinos-12.4.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Create(std::string)’:
> /home/droy/Desktop/Peridigm_Software/Softwares/trilinos-12.4.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:347:55: error: ‘H5Pset_fapl_mpio’ was not declared in this scope
> H5Pset_fapl_mpio(plist_id_, mpiComm, MPI_INFO_NULL);
> ^
> /home/droy/Desktop/Peridigm_Software/Softwares/trilinos-12.4.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Open(std::string, int)’:
> /home/droy/Desktop/Peridigm_Software/Softwares/trilinos-12.4.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:382:62: error: ‘H5Pset_fapl_mpio’ was not declared in this scope
> H5Pset_fapl_mpio(plist_id_, MPI_COMM_WORLD, MPI_INFO_NULL);
> ^
> /home/droy/Desktop/Peridigm_Software/Softwares/trilinos-12.4.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:384:63: error: ‘H5Pset_fapl_mpio’ was not declared in this scope
> H5Pset_fapl_mpio(plist_id_, MpiComm->Comm(), MPI_INFO_NULL);
> ^
> /home/droy/Desktop/Peridigm_Software/Softwares/trilinos-12.4.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Write(const string&, const Epetra_MultiVector&, bool)’:
> /home/droy/Desktop/Peridigm_Software/Softwares/trilinos-12.4.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1052:51: error: ‘H5Pset_dxpl_mpio’ was not declared in this scope
> H5Pset_dxpl_mpio(plist_id_, H5FD_MPIO_COLLECTIVE);
> ^
> /home/droy/Desktop/Peridigm_Software/Softwares/trilinos-12.4.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Read(const string&, Epetra_MultiVector*&, bool, const int&)’:
> /home/droy/Desktop/Peridigm_Software/Softwares/trilinos-12.4.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1146:51: error: ‘H5Pset_dxpl_mpio’ was not declared in this scope
> H5Pset_dxpl_mpio(plist_id_, H5FD_MPIO_COLLECTIVE);
> ^
> /home/droy/Desktop/Peridigm_Software/Softwares/trilinos-12.4.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Write(const string&, const string&, int, int, int, const void*)’:
> /home/droy/Desktop/Peridigm_Software/Softwares/trilinos-12.4.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1691:51: error: ‘H5Pset_dxpl_mpio’ was not declared in this scope
> H5Pset_dxpl_mpio(plist_id_, H5FD_MPIO_COLLECTIVE);
> ^
> packages/epetraext/src/CMakeFiles/epetraext.dir/build.make:950: recipe for target 'packages/epetraext/src/CMakeFiles/epetraext.dir/inout/EpetraExt_HDF5.cpp.o' failed
> make[2]: *** [packages/epetraext/src/CMakeFiles/epetraext.dir/inout/EpetraExt_HDF5.cpp.o] Error 1
> CMakeFiles/Makefile2:27596: recipe for target 'packages/epetraext/src/CMakeFiles/epetraext.dir/all' failed
> make[1]: *** [packages/epetraext/src/CMakeFiles/epetraext.dir/all] Error 2
> Makefile:160: recipe for target 'all' failed
> make: *** [all] Error 2
>
> Yours Faithfully
>
> Anil Pathrikar
>
> Research Scholar,
>
> Indian Institute of Science
>
>
>
> _______________________________________________
> Trilinos-Users mailing list
> Trilinos-Users at trilinos.org
> https://trilinos.org/mailman/listinfo/trilinos-users
>
>
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