[Trilinos-Users] [EXTERNAL] PyTrilinos Teuchos Array(string, bool)
Coon, Ethan
ecoon at lanl.gov
Wed Oct 28 12:50:32 EDT 2015
Hi Bill,
That’s the one we need anyway — I tested them all for completeness, but Array(string) was what we were missing. Effectively we’re using this to write input files for an existing C++ code that reads Teuchos xml files, so we can’t just swap out the parameter types. But since we don’t really use Array(bool) it should be fine.
Thanks,
Ethan
------------------------------------------------------------------------
Ethan Coon
Research Scientist
Computational Earth Science -- EES-16
Los Alamos National Laboratory
505-665-8289
http://www.lanl.gov/expertise/profiles/view/ethan-coon
------------------------------------------------------------------------
> On Oct 27, 2015, at 3:27 PM, Bill Spotz <wfspotz at sandia.gov> wrote:
>
> Ethan,
>
> I have implemented the Array(string) support. It should be in Trilinos 12.4, which is coming out very soon.
>
> For Array(bool), this tries to construct a Teuchos::Array<bool>, which wraps a std::vector<bool>, which is specialized, and results in a compilation error. I suggest just using Array(int) instead.
>
> -Bill
>
>> On Sep 21, 2015, at 9:54 AM, Coon, Ethan <ecoon at lanl.gov> wrote:
>>
>> Hi all,
>>
>> I’m hoping to use PyTrilinos to generate ParameterLists, but am having trouble with our need for Array(bool) and Array(string) types. Are these supported? Can they be supported? It seems that everything else works as we need.
>>
>> Below is an example demonstrating what I get, and attached is a simple script which I would like to work.
>>
>> Thanks much for your thoughts/comments,
>>
>> Ethan
>>
>>
>>
>>
>>
>>
>> [ecoon at --- ~] > ipython
>> Python 2.7.8 |Anaconda 2.1.0 (64-bit)| (default, Aug 21 2014, 18:22:21)
>> Type "copyright", "credits" or "license" for more information.
>>
>> IPython 2.2.0 -- An enhanced Interactive Python.
>> Anaconda is brought to you by Continuum Analytics.
>> Please check out: http://continuum.io/thanks and https://binstar.org
>> ? -> Introduction and overview of IPython's features.
>> %quickref -> Quick reference.
>> help -> Python's own help system.
>> object? -> Details about 'object', use 'object??' for extra details.
>>
>> In [1]: import PyTrilinos
>>
>> In [2]: print PyTrilinos.__version__
>> 12.2
>>
>> In [3]: import numpy
>>
>> In [4]: print numpy.__version__
>> 1.9.0
>>
>> In [5]: my_params = """
>> <ParameterList name="Main" type="ParameterList">
>> <ParameterList name="Regions" type="ParameterList">
>> <Parameter name="my_bool" type="bool" value="true" />
>> <Parameter name="my_int" type="int" value="3" />
>> <Parameter name="my_double" type="double" value="3.1" />
>> <Parameter name="my_string" type="string" value="pi" />
>> <!--Parameter name="my_bool_array" type="Array(bool)" value="{true,false}" -->
>> <Parameter name="my_int_array" type="Array(int)" value="{3,4}" />
>> <Parameter name="my_double_array" type="Array(double)" value="{3.1,3.14159}" />
>> <!--Parameter name="my_string_array" type="Array(string)" value="{pi,i like pie}" -->
>> </ParameterList>
>> </ParameterList>
>> """
>>
>> In [6]: from PyTrilinos import Teuchos
>>
>> In [7]: reader = Teuchos.XMLParameterListReader()
>>
>> In [8]: source = Teuchos.StringInputSource(my_params)
>>
>> In [9]: xmlObj = source.getObject()
>>
>> In [10]: pList = reader.toParameterList(xmlObj)
>>
>> In [11]: print pList
>> {'Regions': {'my_double_array': array([ 3.1 , 3.14159]), 'my_int': 3, 'my_bool': True, 'my_int_array': array([3, 4], dtype=int32), 'my_string': 'pi', 'my_double': 3.1}}
>>
>> In [12]: my_params = """
>> <ParameterList name="Main" type="ParameterList">
>> <ParameterList name="Regions" type="ParameterList">
>> <Parameter name="my_bool" type="bool" value="true" />
>> <Parameter name="my_int" type="int" value="3" />
>> <Parameter name="my_double" type="double" value="3.1" />
>> <Parameter name="my_string" type="string" value="pi" />
>> <!--Parameter name="my_bool_array" type="Array(bool)" value="{true,false}" -->
>> <Parameter name="my_int_array" type="Array(int)" value="{3,4}" />
>> <Parameter name="my_double_array" type="Array(double)" value="{3.1,3.14159}" />
>> <Parameter name="my_string_array" type="Array(string)" value="{pi,i like pie}" />
>> </ParameterList>
>> </ParameterList>
>> """
>>
>> In [13]: source = Teuchos.StringInputSource(my_params)
>>
>> In [14]: xmlObj = source.getObject()
>>
>> In [15]: pList = reader.toParameterList(xmlObj)
>>
>> In [16]: print pList
>> ---------------------------------------------------------------------------
>> ValueError Traceback (most recent call last)
>> <ipython-input-16-8444d27fed69> in <module>()
>> ----> 1 print pList
>>
>> /n/swdev/ats/trilinos/trilinos-12.2.1-install/lib/python2.7/site-packages/PyTrilinos/Teuchos.pyc in __str__(self, *args)
>> 5433 an equivalent dictionary.
>> 5434 """
>> -> 5435 return _Teuchos.ParameterList___str__(self, *args)
>> 5436
>> 5437
>>
>> /n/swdev/packages/Ubuntu-14.04-x86_64/anaconda-python/2.1.0/lib/python2.7/site-packages/numpy/core/numeric.pyc in array_repr(arr, max_line_width, precision, suppress_small)
>> 1651 if arr.size > 0 or arr.shape==(0,):
>> 1652 lst = array2string(arr, max_line_width, precision, suppress_small,
>> -> 1653 ', ', "array(")
>> 1654 else: # show zero-length shape unless it is (0,)
>> 1655 lst = "[], shape=%s" % (repr(arr.shape),)
>>
>> /n/swdev/packages/Ubuntu-14.04-x86_64/anaconda-python/2.1.0/lib/python2.7/site-packages/numpy/core/arrayprint.pyc in array2string(a, max_line_width, precision, suppress_small, separator, prefix, style, formatter)
>> 447 x = _convert_arrays(x)
>> 448 lst = style(x)
>> --> 449 elif reduce(product, a.shape) == 0:
>> 450 # treat as a null array if any of shape elements == 0
>> 451 lst = "[]"
>>
>> ValueError: Parameter 'my_string_array' is of unsupported type
>>
>> In [17]: my_params = """
>> <ParameterList name="Main" type="ParameterList">
>> <ParameterList name="Regions" type="ParameterList">
>> <Parameter name="my_bool" type="bool" value="true" />
>> <Parameter name="my_int" type="int" value="3" />
>> <Parameter name="my_double" type="double" value="3.1" />
>> <Parameter name="my_string" type="string" value="pi" />
>> <Parameter name="my_bool_array" type="Array(bool)" value="{true,false}" />
>> <Parameter name="my_int_array" type="Array(int)" value="{3,4}" />
>> <Parameter name="my_double_array" type="Array(double)" value="{3.1,3.14159}" />
>> <Parameter name="my_string_array" type="Array(string)" value="{pi,i like pie}" />
>> </ParameterList>
>> </ParameterList>
>> """
>>
>> In [18]: source = Teuchos.StringInputSource(my_params)
>>
>> In [19]: xmlObj = source.getObject()
>>
>> In [20]: pList = reader.toParameterList(xmlObj)
>> ---------------------------------------------------------------------------
>> SystemError Traceback (most recent call last)
>> <ipython-input-20-f48bdc85f5fb> in <module>()
>> ----> 1 pList = reader.toParameterList(xmlObj)
>>
>> /n/swdev/ats/trilinos/trilinos-12.2.1-install/lib/python2.7/site-packages/PyTrilinos/Teuchos.pyc in toParameterList(self, *args)
>> 5916 def toParameterList(self, *args):
>> 5917 """toParameterList(XMLParameterListReader self, XMLObject xml) -> ParameterList"""
>> -> 5918 return _Teuchos.XMLParameterListReader_toParameterList(self, *args)
>> 5919
>> 5920
>>
>> SystemError: /n/swdev/ats/trilinos/trilinos-12.2.1-source/packages/teuchos/parameterlist/src/Teuchos_ParameterEntryXMLConverterDB.cpp:85:
>>
>> Throw number = 11
>>
>> Throw test that evaluated to true: it == getConverterMap().end()
>>
>> Can't find converter for parameter entry of type: Array(bool)
>>
>> <pytrilinos-test.py>
>
> ** Bill Spotz **
> ** Sandia National Laboratories Voice: (505)845-0170 **
> ** P.O. Box 5800 Fax: (505)284-0154 **
> ** Albuquerque, NM 87185-0370 Email: wfspotz at sandia.gov **
>
>
>
>
>
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