[Trilinos-Users] [EXTERNAL] Build issues with SuiteSparse (UMFPACK)

[Siva Rajamanickam]

Antonello,
   For your question 1, I can only guess. It is quite possible when they built 
the SuiteSparse for library they included some dependencies or used options 
where they turn off the dependencies in compile time. I have to check if there 
is a way to not use suitesparse_malloc.  My guess is the newer versions of 
SuiteSparse codes require suitesparseconfig. It is also possible the Debian 
versions use a slightly older version of SuiteSparse where suitesparse_malloc is 
not used.

Thanks
Siva



On 01/06/2015 10:37 AM, Gerbi Antonello wrote:
> Hi!
>
> I am a quite new Trilinos user (it is one of LifeV's dependencies, with which 
> I'm working), and I experienced two issues in the build/install processes 
> (using the tarball sources, version 11.12.1); I finally managed to solve both 
> of them, and thought it was worth sharing my experience in this group!
>
> I am working on a Debian Jessie workstation (kernel version 3.16.7), and using 
> the do-configure script included at the end of the email.
>
>
> Here are the issues:
>
> 1) When using the SuiteSparse libraries provided by Debian's repositories 
> (i.e. sudo apt-get install libsuitesparse-dev) the build process works with 
> the option UMFPACK_LIBRARY_NAMES set to "umfpack;amd". In this case, 
> subsequently building LifeV works out of the box.
>
> On the other hand, when compiling+installing SuiteSparse from source, I had to 
> modify that option so that it reads 
> "umfpack;suitesparseconfig;cholmod;colamd;amd", otherwise LifeV's build fails 
> at the linking stage (with errors such as "undefined reference to 
> suitesparse_malloc").
>
> The only reason I can think of which could explain such behavior is that 
> SuiteSparse's Makefile only produces static libraries, while Debian's 
> repositories provide the dynamic version too.
>
>
> 2) It seems that the make install command forgets to copy two .h files; for 
> LifeV's compilation to succeed I also had to run "cp 
> $TRILINOS_SOURCE_DIR/packages/teuchos/core/src/Teuchos_RCPBoostSharedPtrConversions* 
> $TRILINOS_BUILD_DIR/include"
>
>
> Has anybody else experienced these problems?
>
> Thanks in advance!
> Antonello
>
>
>
>
> do-configure script:
>
> #!/bin/bash
>
> EXTRA_ARGS=$@
>
> cmake \
>     -D CMAKE_BUILD_TYPE:STRING=RELEASE \
>     -D Trilinos_ENABLE_Amesos:BOOL=ON \
>     -D Trilinos_ENABLE_Anasazi:BOOL=ON \
>     -D Trilinos_ENABLE_AztecOO:BOOL=ON \
>     -D Trilinos_ENABLE_Belos:BOOL=ON \
>     -D Trilinos_ENABLE_Epetra:BOOL=ON \
>     -D Trilinos_ENABLE_EpetraExt:BOOL=ON \
>     -D Trilinos_ENABLE_Galeri:BOOL=OFF \
>     -D Trilinos_ENABLE_Ifpack:BOOL=ON \
>     -D Trilinos_ENABLE_Isorropia:BOOL=OFF \
>     -D Trilinos_ENABLE_Kokkos:BOOL=ON \
>     -D Trilinos_ENABLE_ML:BOOL=ON \
>     -D Trilinos_ENABLE_TESTS:BOOL=OFF \
>     -D Trilinos_ENABLE_Teuchos:BOOL=ON \
>     -D Trilinos_ENABLE_ThreadPool:BOOL=ON \
>     -D Trilinos_ENABLE_Tpetra:BOOL=ON \
>     -D Trilinos_ENABLE_Triutils:BOOL=ON \
>     -D Trilinos_ENABLE_Zoltan:BOOL=ON \
>     \
>     -D Trilinos_EXTRA_LINK_FLAGS:STRING="-lpthread" \
>     -D TPL_ENABLE_Pthread:BOOL=ON \
>     \
>     -D TPL_ENABLE_BLAS:BOOL=ON \
>     -D BLAS_INCLUDE_DIRS:PATH=/usr/include/ \
>     -D BLAS_LIBRARY_DIRS:PATH=/usr/lib/ \
>     \
>     -D TPL_ENABLE_LAPACK:BOOL=ON \
>     -D LAPACK_INCLUDE_DIRS:PATH=/usr/include/ \
>     -D LAPACK_LIBRARY_DIRS:PATH=/usr/lib/ \
>     \
>     -D TPL_ENABLE_HDF5:BOOL=ON \
>     -D HDF5_INCLUDE_DIRS:PATH=/usr/local/include/ \
>     -D HDF5_LIBRARY_DIRS:PATH=/usr/local/lib/ \
>     \
>     -D TPL_ENABLE_UMFPACK:BOOL=ON \
>     -D UMFPACK_INCLUDE_DIRS:PATH=/usr/local/include/ \
>     -D UMFPACK_LIBRARY_DIRS:PATH=/usr/local/lib/ \
>     -D 
> UMFPACK_LIBRARY_NAMES:STRING="umfpack;suitesparseconfig;cholmod;colamd;amd" \
>     \
>     -D TPL_ENABLE_MPI:BOOL=ON \
>     -D MPI_BASE_DIR:PATH=/usr/lib/openmpi/ \
>     -D MPI_BIN_DIR:PATH=/usr/bin \
>     \
>     -D TPL_ENABLE_ParMETIS:BOOL=ON \
>     -D ParMETIS_LIBRARY_DIRS:PATH=/usr/local/lib \
>     \
>     -D CMAKE_INSTALL_PREFIX:PATH=./ \
>     $EXTRA_ARGS \
>     ../trilinos/
>
>
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