[Trilinos-Users] gcc 4.7 compile error for zoltan package

Mon Aug 27 13:48:15 MDT 2012

Hi!

On Mon, 2012-08-27 at 11:44 -0400, Bartlett, Roscoe A. wrote:
> Andre,
> 
> The flag -ansi should not be added to the compile line in a release of Trilinos (only in the development mode which should not be the default).  
> Can you cd into the directory and type 'make VERBOSE=1 <the target>' and see what compile options it is showing? 

The build process is driven by an external script (dorsal, a script to install FEniCS) and the output is a bit long,
but I could  not spot any suspicious flags (no idea what the zoltan_EXPORTS is all about)
I added some linebreaks to make the output more readable:

[ 27%] Building C object packages/zoltan/src/CMakeFiles/zoltan.dir/zz/murmur3.c.o
cd /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/dorsal_build_dir/packages/zoltan/src 
&& /usr/lib64/openmpi/bin/mpicc  -Dzoltan_EXPORTS -O3 -fPIC 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/dorsal_build_dir 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/dorsal_build_dir/packages/zoltan/src 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/include 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/all 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/coloring 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/graph
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/ha 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/hier 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/hsfc 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/lb 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/matrix 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/order 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/par 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/params 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/tpls 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/phg 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/rcb 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/reftree 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/simple 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/timer 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/Utilities/Communication 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/Utilities/DDirectory 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/Utilities/Timer 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/Utilities/shared 
-I/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/zz    
-o CMakeFiles/zoltan.dir/zz/murmur3.c.o   
-c /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/zz/murmur3.c

gives the error message:

/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41: warning: always_inline function might not be inlinable [-Wattributes]
/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/zz/murmur3.c:45:41: warning: always_inline function might not be inlinable [-Wattributes]
/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/zz/murmur3.c: In function ‘MurmurHash3_x86_32’:
/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/zz/murmur3.c:45:41: error: inlining failed in call to always_inline ‘fmix32’: function body can be overwritten at link time
/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-10.12.2-Source/packages/zoltan/src/zz/murmur3.c:121:6: error: called from here

> What is your configure line?  What Trilinos release version is this?

This was the latest trilinos release 10.12.2.
cmake is executed with the following options

-D CMAKE_CXX_COMPILER:FILEPATH=mpicxx
-D CMAKE_C_COMPILER:FILEPATH=mpicc
-D Trilinos_INSTALL_INCLUDE_DIR:PATH=include/trilinos
-D Trilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON
-D Trilinos_ENABLE_PyTrilinos:BOOL=ON
-D Trilinos_ENABLE_Fortran:BOOL=OFF
-D Trilinos_ENABLE_TESTS:BOOL=OFF
-D Trilinos_ENABLE_EXAMPLES:BOOL=OFF
-D CMAKE_BUILD_TYPE:STRING=Release
-D BUILD_SHARED_LIBS:BOOL=ON
-D TPL_ENABLE_MPI:BOOL=ON
-D TPL_ENABLE_UMFPACK:BOOL=ON

As I said, gcc version is 4.7 on a fedora 17 system.
Thanks for helping with this issue!

Best,
--
Andre

> 
> Otherwise, I believe that Trilinos does not assume the C99 standard, only the C89/C90 standard, so such code would have to be changed or be explicitly dependent on a C99 enable flag or something.  Trilinos needs a more clear policy on assumed C standards and a clear way to allow some code to require (or be conditionally enabled) for the C99 standard.
> 
> -Ross
> 
> Dr. Roscoe A. Bartlett, PhD
> Oak Ridge National Laboratories
> Trilinos Software Engineering Technologies and Integration Lead
> CASL Virtual Reactor Software Engineering Lead
> 
> 
> 
> > -----Original Message-----
> > From: trilinos-users-bounces at software.sandia.gov [mailto:trilinos-users-
> > bounces at software.sandia.gov] On Behalf Of Andrey Prokopenko
> > Sent: Sunday, August 26, 2012 9:08 PM
> > To: Andre Massing
> > Cc: trilinos-users at software.sandia.gov
> > Subject: Re: [Trilinos-Users] gcc 4.7 compile error for zoltan package
> > 
> > Hi,
> > 
> >  I've also bumped into it, and also cannot access bugzilla. Some search
> >  showed that one of the problems was that you actually need to add
> >  inline keyword like
> >     inline __attribute__((always_inline))
> > 
> >  But it seems that you cannot do that because you need at least C99 for
> >  inline keyword, but some configs in CMake or Makefile.am cause the
> >  code to be compiled -ansi, or -c90. The code in question seems to be
> >  in public domain, but I'm not sure about how easy is to modify it and
> >  what are the issues related to copyright. The easiest thing would be
> >  to require gcc < 4.7, or removed -ansi for compilation.
> > 
> > On Sun, Aug 26, 2012 at 4:57 PM, Andre Massing <massing at simula.no>
> > wrote:
> > > -----BEGIN PGP SIGNED MESSAGE-----
> > > Hash: SHA1
> > >
> > > Hi!
> > >
> > > On 08/27/2012 12:41 AM, Nico Schlömer wrote:
> > >> Hi Andre,
> > >>
> > >> are you compiling shared libraries? I bumped into the same issue
> > >> this weekend with GCC 4.7.
> > >
> > > Yes, that happened when I compiled the shared libraries.
> > >
> > >> The bug is registered at
> > >> https://software.sandia.gov/bugzilla/show_bug.cgi?id=5680 where I
> > >> also submitted a patch, so I suppose it won't take long until this
> > >> is fixed.
> > >
> > > Many thanks for the pointer to the bug report! Unfortunately I cannot
> > > read it since I haven't a bugzilla account yet, but I will try to ask
> > > for one. Good to know that the problem has been reported already.
> > >
> > > Best,
> > > Andre
> > >
> > >>
> > >> --Nico
> > >>
> > >>
> > >> On Mon, Aug 27, 2012 at 12:25 AM, Andre Massing <massing at simula.no>
> > >> wrote:
> > >>> Hi!
> > >>>
> > >>> I just tried to compile some of the newest trilinos packages and
> > >>> got the following compile error when zoltan was compiled on a
> > >>> Fedora 17 system using the gcc 4.7 compiler (after defining the
> > >>> FORCE_INLINE macro in the zoltan source, the package compiles
> > >>> fine, but I unsure what a proper fix should look like):
> > >>>
> > >>> [ 27%] Building C object
> > >>> packages/zoltan/src/CMakeFiles/zoltan.dir/zz/murmur3.c.o
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> > >>>
> > >>>
> > > warning: always_inline function might not be inlinable [-Wattributes]
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:45:41:
> > >>>
> > >>>
> > > warning: always_inline function might not be inlinable [-Wattributes]
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
> > >>>
> > >>>
> > > In function ?MurmurHash3_x86_32?:
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:45:41:
> > >>>
> > >>>
> > > error: inlining failed in call to always_inline ?fmix32?: function
> > >>> body can be overwritten at link time
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:121:6:
> > >>>
> > >>>
> > > error: called from here
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
> > >>>
> > >>>
> > > In function ?MurmurHash3_x86_128?:
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> > >>>
> > >>>
> > > error: inlining failed in call to always_inline ?fmix64?: function
> > >>> body can be overwritten at link time
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:218:14:
> > >>>
> > >>>
> > > error: called from here
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> > >>>
> > >>>
> > > error: inlining failed in call to always_inline ?fmix64?: function
> > >>> body can be overwritten at link time
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:219:14:
> > >>>
> > >>>
> > > error: called from here
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> > >>>
> > >>>
> > > error: inlining failed in call to always_inline ?fmix64?: function
> > >>> body can be overwritten at link time
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:220:14:
> > >>>
> > >>>
> > > error: called from here
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> > >>>
> > >>>
> > > error: inlining failed in call to always_inline ?fmix64?: function
> > >>> body can be overwritten at link time
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:221:14:
> > >>>
> > >>>
> > > error: called from here
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
> > >>>
> > >>>
> > > In function ?MurmurHash3_x64_128?:
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> > >>>
> > >>>
> > > error: inlining failed in call to always_inline ?fmix64?: function
> > >>> body can be overwritten at link time
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:304:6:
> > >>>
> > >>>
> > > error: called from here
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
> > >>>
> > >>>
> > > error: inlining failed in call to always_inline ?fmix64?: function
> > >>> body can be overwritten at link time
> > >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:305:6:
> > >>>
> > >>>
> > > error: called from here
> > >>> make[2]: ***
> > >>> [packages/zoltan/src/CMakeFiles/zoltan.dir/zz/murmur3.c.o] Error
> > >>> 1 make[2]: Leaving directory
> > >>> `/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
> > 10.12.2-Source/dorsal_build_dir'
> > >>>
> > >>>
> > > make[1]: *** [packages/zoltan/src/CMakeFiles/zoltan.dir/all] Error 2
> > >>>
> > >>>
> > >>> _______________________________________________ Trilinos-
> > Users
> > >>> mailing list Trilinos-Users at software.sandia.gov
> > >>> http://software.sandia.gov/mailman/listinfo/trilinos-users
> > >>>
> > > -----BEGIN PGP SIGNATURE-----
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> > > Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
> > >
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> > >
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> > 
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