[Trilinos-Users] Trilinos-Users Digest, Vol 66, Issue 16

Timothy J. Tautges tautges at mcs.anl.gov
Wed Feb 16 07:56:23 MST 2011 

Two answers: 
- the errors about missing includes is because recent versions of gcc moved the location of some of the includes; the new locations also work in previous versions, so no need to use #defs. 

- versions of zoltan are available from www.cs.sandia.gov that are independent of trilinos, though they might not support cmake out of the box. 

- tim


On Feb 16, 2011, at 2:11 AM, trilinos-users-request at software.sandia.gov wrote:

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> Today's Topics:
> 
>   1. Re: Sundance build fail (Brock Palen)
>   2. Re: Sundance build fail (Kevin Long)
>   3. Re: Sundance build fail (Brock Palen)
>   4. Re: Sundance build fail (Kevin Long)
>   5. embed a single library inside another project
>      (Biddiscombe, John A.)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Tue, 15 Feb 2011 15:09:07 -0500
> From: "Brock Palen" <brockp at umich.edu>
> Subject: Re: [Trilinos-Users] Sundance build fail
> To: "Kevin Long" <kevin.long at ttu.edu>
> Cc: trilinos-users at software.sandia.gov
> Message-ID: <0F81156F-7CEA-4DB8-AB28-8A9361CB32E0 at umich.edu>
> Content-Type: text/plain; charset=us-ascii
> 
> When I switched to a GNU compiler build I got the same error.
> 
> 
> Brock Palen
> www.umich.edu/~brockp
> Center for Advanced Computing
> brockp at umich.edu
> (734)936-1985
> 
> 
> 
> On Feb 15, 2011, at 12:56 PM, Kevin Long wrote:
> 
>> 
>> Hi Brock,
>> 
>> Were you able to build successfully with gcc? If it only shows up with the 
>> intel compiler that might tell me something. 
>> 
>> I'll see if I can reproduce the problem. 
>> 
>> Kevin
>> 
>> 
>> 
>> On Tuesday 15 February 2011 11:27:13 am Brock Palen wrote:
>>> I am trying to build trilinos for our users with intel/11.0 and openmpi.
>>> 
>>> I get a linking error with Sundance:
>>> 
>>> 91%] Built target Sundance_FunctionalTest
>>> Linking CXX executable Sundance_HelmholtzEigen2D.exe
>>> /usr/caen/intel-11.0/cc/11.0.074/lib/intel64/libimf.so: warning: warning:
>>> feupdateenv is not implemented and will always fail
>>> CMakeFiles/Sundance_HelmholtzEigen2D.dir/HelmholtzEigen2D.cpp.o: In
>>> function `main':
>>> /tmp/trilinos-10.6.2-Source/packages/Sundance/tests-std-framework/Problem/H
>>> elmholtzEigen2D.cpp:(.text+0x15b3): undefined reference to `vtable for
>>> TSFExtended::AnasaziEigensolver<double>'
>>> /tmp/trilinos-10.6.2-Source/packages/Sundance/tests-std-framework/Problem/H
>>> elmholtzEigen2D.cpp:(.text+0x15bb): undefined reference to `vtable for
>>> TSFExtended::AnasaziEigensolver<double>' make[2]: ***
>>> [packages/Sundance/tests-std-framework/Problem/Sundance_HelmholtzEigen2D.ex
>>> e] Error 1 make[1]: ***
>>> [packages/Sundance/tests-std-framework/Problem/CMakeFiles/Sundance_Helmholt
>>> zEigen2D.dir/all] Error 2 make: *** [all] Error 2
>>> 
>>> 
>>> my cmake configure is:
>>> 
>>>       cmake \
>>>         -D CMAKE_BUILD_TYPE:STRING=RELEASE \
>>>         -D Trilinos_ENABLE_TESTS:BOOL=ON \
>>>         -D Trilinos_ENABLE_ALL_PACKAGES:BOOL=ON \
>>>         -D Trilinos_ENABLE_SECONDARY_STABLE_CODE=ON \
>>>         -D TPL_ENABLE_QT:BOOL=OFF \
>>>         -D TPL_ENABLE_Boost:BOOL=OFF \
>>>         -D Trilinos_ENABLE_TriKota:BOOL=OFF \
>>>         -D Trilinos_ENABLE_PyTrilinos:BOOL=OFF \
>>>         -D TPL_ENABLE_MPI:BOOL=ON \
>>>         -D MPI_EXEC_MAX_NUMPROCS:STRING=4 \
>>>         $EXTRA_ARGS \
>>>         /tmp/trilinos-10.6.2-Source
>>> 
>>> Any help would be great.
>>> 
>>> Brock Palen
>>> www.umich.edu/~brockp
>>> Center for Advanced Computing
>>> brockp at umich.edu
>>> (734)936-1985
>>> 
>>> 
>>> 
>>> 
>>> 
>>> _______________________________________________
>>> Trilinos-Users mailing list
>>> Trilinos-Users at software.sandia.gov
>>> http://software.sandia.gov/mailman/listinfo/trilinos-users
>> 
>> 
>> 
>> -- 
>> ------------------------------------------------------
>> Kevin Long
>> Associate Professor
>> Department of Mathematics and Statistics
>> Texas Tech University
>> Lubbock, TX 
>> 
>> "The end of fear is the beginning of wisdom" 
>>   -- Bertrand Russell
>> ------------------------------------------------------
>> 
>> 
> 
> 
> 
> 
> 
> ------------------------------
> 
> Message: 2
> Date: Tue, 15 Feb 2011 14:31:46 -0600
> From: "Kevin Long" <kevin.long at ttu.edu>
> Subject: Re: [Trilinos-Users] Sundance build fail
> To: trilinos-users at software.sandia.gov
> Message-ID: <201102151431.46726.kevin.long at ttu.edu>
> Content-Type: text/plain; charset=cp 850
> 
> 
> I get the same error using gnu also. I'll fix. 
> 
> BTW, when testing this out did you run into a bunch of errors in Zoltan with 
> the gnu compiler? I got errors related to missing declarations of functions 
> from <stdio.h>, probably resulting from a missing include somewhere. Probably 
> easy to fix, but as I'm not a Zoltan developer I just disabled it and moved 
> on to the Sundance problem. 
> 
> Kevin
> 
> 
> 
> On Tuesday 15 February 2011 02:09:07 pm Brock Palen wrote:
>> When I switched to a GNU compiler build I got the same error.
>> 
>> 
>> Brock Palen
>> www.umich.edu/~brockp
>> Center for Advanced Computing
>> brockp at umich.edu
>> (734)936-1985
>> 
>> On Feb 15, 2011, at 12:56 PM, Kevin Long wrote:
>>> Hi Brock,
>>> 
>>> Were you able to build successfully with gcc? If it only shows up with
>>> the intel compiler that might tell me something.
>>> 
>>> I'll see if I can reproduce the problem.
>>> 
>>> Kevin
>>> 
>>> On Tuesday 15 February 2011 11:27:13 am Brock Palen wrote:
>>>> I am trying to build trilinos for our users with intel/11.0 and openmpi.
>>>> 
>>>> I get a linking error with Sundance:
>>>> 
>>>> 91%] Built target Sundance_FunctionalTest
>>>> Linking CXX executable Sundance_HelmholtzEigen2D.exe
>>>> /usr/caen/intel-11.0/cc/11.0.074/lib/intel64/libimf.so: warning:
>>>> warning: feupdateenv is not implemented and will always fail
>>>> CMakeFiles/Sundance_HelmholtzEigen2D.dir/HelmholtzEigen2D.cpp.o: In
>>>> function `main':
>>>> /tmp/trilinos-10.6.2-Source/packages/Sundance/tests-std-framework/Proble
>>>> m/H elmholtzEigen2D.cpp:(.text+0x15b3): undefined reference to `vtable
>>>> for TSFExtended::AnasaziEigensolver<double>'
>>>> /tmp/trilinos-10.6.2-Source/packages/Sundance/tests-std-framework/Proble
>>>> m/H elmholtzEigen2D.cpp:(.text+0x15bb): undefined reference to `vtable
>>>> for TSFExtended::AnasaziEigensolver<double>' make[2]: ***
>>>> [packages/Sundance/tests-std-framework/Problem/Sundance_HelmholtzEigen2D
>>>> .ex e] Error 1 make[1]: ***
>>>> [packages/Sundance/tests-std-framework/Problem/CMakeFiles/Sundance_Helmh
>>>> olt zEigen2D.dir/all] Error 2 make: *** [all] Error 2
>>>> 
>>>> 
>>>> my cmake configure is:
>>>> 
>>>>       cmake \
>>>>         -D CMAKE_BUILD_TYPE:STRING=RELEASE \
>>>>         -D Trilinos_ENABLE_TESTS:BOOL=ON \
>>>>         -D Trilinos_ENABLE_ALL_PACKAGES:BOOL=ON \
>>>>         -D Trilinos_ENABLE_SECONDARY_STABLE_CODE=ON \
>>>>         -D TPL_ENABLE_QT:BOOL=OFF \
>>>>         -D TPL_ENABLE_Boost:BOOL=OFF \
>>>>         -D Trilinos_ENABLE_TriKota:BOOL=OFF \
>>>>         -D Trilinos_ENABLE_PyTrilinos:BOOL=OFF \
>>>>         -D TPL_ENABLE_MPI:BOOL=ON \
>>>>         -D MPI_EXEC_MAX_NUMPROCS:STRING=4 \
>>>>         $EXTRA_ARGS \
>>>>         /tmp/trilinos-10.6.2-Source
>>>> 
>>>> Any help would be great.
>>>> 
>>>> Brock Palen
>>>> www.umich.edu/~brockp
>>>> Center for Advanced Computing
>>>> brockp at umich.edu
>>>> (734)936-1985
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> _______________________________________________
>>>> Trilinos-Users mailing list
>>>> Trilinos-Users at software.sandia.gov
>>>> http://software.sandia.gov/mailman/listinfo/trilinos-users
>>> 
>>> --
>>> ------------------------------------------------------
>>> Kevin Long
>>> Associate Professor
>>> Department of Mathematics and Statistics
>>> Texas Tech University
>>> Lubbock, TX
>>> 
>>> "The end of fear is the beginning of wisdom"
>>>   -- Bertrand Russell
>>> ------------------------------------------------------
>> 
>> _______________________________________________
>> Trilinos-Users mailing list
>> Trilinos-Users at software.sandia.gov
>> http://software.sandia.gov/mailman/listinfo/trilinos-users
> 
> 
> 
> -- 
> ------------------------------------------------------
> Kevin Long
> Associate Professor
> Department of Mathematics and Statistics
> Texas Tech University
> Lubbock, TX 
> 
> "The end of fear is the beginning of wisdom" 
>    -- Bertrand Russell
> ------------------------------------------------------
> 
> 
> 
> ------------------------------
> 
> Message: 3
> Date: Tue, 15 Feb 2011 15:34:13 -0500
> From: "Brock Palen" <brockp at umich.edu>
> Subject: Re: [Trilinos-Users] Sundance build fail
> To: "Kevin Long" <kevin.long at ttu.edu>
> Cc: trilinos-users at software.sandia.gov
> Message-ID: <1D125531-ADE6-40E0-AEF5-6CDFED0B5DE2 at umich.edu>
> Content-Type: text/plain; charset=us-ascii
> 
> I did not, but I don't know if I am enabling it or not iwth my options.
> Sorry first time Trilinos builder. 
> 
> Brock Palen
> www.umich.edu/~brockp
> Center for Advanced Computing
> brockp at umich.edu
> (734)936-1985
> 
> 
> 
> On Feb 15, 2011, at 3:31 PM, Kevin Long wrote:
> 
>> 
>> I get the same error using gnu also. I'll fix. 
>> 
>> BTW, when testing this out did you run into a bunch of errors in Zoltan with 
>> the gnu compiler? I got errors related to missing declarations of functions 
>> from <stdio.h>, probably resulting from a missing include somewhere. Probably 
>> easy to fix, but as I'm not a Zoltan developer I just disabled it and moved 
>> on to the Sundance problem. 
>> 
>> Kevin
>> 
>> 
>> 
>> On Tuesday 15 February 2011 02:09:07 pm Brock Palen wrote:
>>> When I switched to a GNU compiler build I got the same error.
>>> 
>>> 
>>> Brock Palen
>>> www.umich.edu/~brockp
>>> Center for Advanced Computing
>>> brockp at umich.edu
>>> (734)936-1985
>>> 
>>> On Feb 15, 2011, at 12:56 PM, Kevin Long wrote:
>>>> Hi Brock,
>>>> 
>>>> Were you able to build successfully with gcc? If it only shows up with
>>>> the intel compiler that might tell me something.
>>>> 
>>>> I'll see if I can reproduce the problem.
>>>> 
>>>> Kevin
>>>> 
>>>> On Tuesday 15 February 2011 11:27:13 am Brock Palen wrote:
>>>>> I am trying to build trilinos for our users with intel/11.0 and openmpi.
>>>>> 
>>>>> I get a linking error with Sundance:
>>>>> 
>>>>> 91%] Built target Sundance_FunctionalTest
>>>>> Linking CXX executable Sundance_HelmholtzEigen2D.exe
>>>>> /usr/caen/intel-11.0/cc/11.0.074/lib/intel64/libimf.so: warning:
>>>>> warning: feupdateenv is not implemented and will always fail
>>>>> CMakeFiles/Sundance_HelmholtzEigen2D.dir/HelmholtzEigen2D.cpp.o: In
>>>>> function `main':
>>>>> /tmp/trilinos-10.6.2-Source/packages/Sundance/tests-std-framework/Proble
>>>>> m/H elmholtzEigen2D.cpp:(.text+0x15b3): undefined reference to `vtable
>>>>> for TSFExtended::AnasaziEigensolver<double>'
>>>>> /tmp/trilinos-10.6.2-Source/packages/Sundance/tests-std-framework/Proble
>>>>> m/H elmholtzEigen2D.cpp:(.text+0x15bb): undefined reference to `vtable
>>>>> for TSFExtended::AnasaziEigensolver<double>' make[2]: ***
>>>>> [packages/Sundance/tests-std-framework/Problem/Sundance_HelmholtzEigen2D
>>>>> .ex e] Error 1 make[1]: ***
>>>>> [packages/Sundance/tests-std-framework/Problem/CMakeFiles/Sundance_Helmh
>>>>> olt zEigen2D.dir/all] Error 2 make: *** [all] Error 2
>>>>> 
>>>>> 
>>>>> my cmake configure is:
>>>>> 
>>>>>      cmake \
>>>>>        -D CMAKE_BUILD_TYPE:STRING=RELEASE \
>>>>>        -D Trilinos_ENABLE_TESTS:BOOL=ON \
>>>>>        -D Trilinos_ENABLE_ALL_PACKAGES:BOOL=ON \
>>>>>        -D Trilinos_ENABLE_SECONDARY_STABLE_CODE=ON \
>>>>>        -D TPL_ENABLE_QT:BOOL=OFF \
>>>>>        -D TPL_ENABLE_Boost:BOOL=OFF \
>>>>>        -D Trilinos_ENABLE_TriKota:BOOL=OFF \
>>>>>        -D Trilinos_ENABLE_PyTrilinos:BOOL=OFF \
>>>>>        -D TPL_ENABLE_MPI:BOOL=ON \
>>>>>        -D MPI_EXEC_MAX_NUMPROCS:STRING=4 \
>>>>>        $EXTRA_ARGS \
>>>>>        /tmp/trilinos-10.6.2-Source
>>>>> 
>>>>> Any help would be great.
>>>>> 
>>>>> Brock Palen
>>>>> www.umich.edu/~brockp
>>>>> Center for Advanced Computing
>>>>> brockp at umich.edu
>>>>> (734)936-1985
>>>>> 
>>>>> 
>>>>> 
>>>>> 
>>>>> 
>>>>> _______________________________________________
>>>>> Trilinos-Users mailing list
>>>>> Trilinos-Users at software.sandia.gov
>>>>> http://software.sandia.gov/mailman/listinfo/trilinos-users
>>>> 
>>>> --
>>>> ------------------------------------------------------
>>>> Kevin Long
>>>> Associate Professor
>>>> Department of Mathematics and Statistics
>>>> Texas Tech University
>>>> Lubbock, TX
>>>> 
>>>> "The end of fear is the beginning of wisdom"
>>>>  -- Bertrand Russell
>>>> ------------------------------------------------------
>>> 
>>> _______________________________________________
>>> Trilinos-Users mailing list
>>> Trilinos-Users at software.sandia.gov
>>> http://software.sandia.gov/mailman/listinfo/trilinos-users
>> 
>> 
>> 
>> -- 
>> ------------------------------------------------------
>> Kevin Long
>> Associate Professor
>> Department of Mathematics and Statistics
>> Texas Tech University
>> Lubbock, TX 
>> 
>> "The end of fear is the beginning of wisdom" 
>>   -- Bertrand Russell
>> ------------------------------------------------------
>> 
>> 
> 
> 
> 
> 
> 
> ------------------------------
> 
> Message: 4
> Date: Tue, 15 Feb 2011 18:03:07 -0600
> From: "Kevin Long" <kevin.long at ttu.edu>
> Subject: Re: [Trilinos-Users] Sundance build fail
> To: trilinos-users at software.sandia.gov
> Message-ID: <201102151803.07631.kevin.long at ttu.edu>
> Content-Type: text/plain; charset=cp 850
> 
> 
> Hi Brock,
> 
> You can fix the problem by adding
> 
> -D Trilinos_ENABLE_EXPLICIT_INSTANTIATION:BOOL=ON \
> 
> to your cmake command line. 
> 
> Kevin
> 
> 
> -- 
> ------------------------------------------------------
> Kevin Long
> Associate Professor
> Department of Mathematics and Statistics
> Texas Tech University
> Lubbock, TX 
> 
> "The end of fear is the beginning of wisdom" 
>    -- Bertrand Russell
> ------------------------------------------------------
> 
> 
> 
> ------------------------------
> 
> Message: 5
> Date: Wed, 16 Feb 2011 09:08:30 +0100
> From: "Biddiscombe, John A." <biddisco at cscs.ch>
> Subject: [Trilinos-Users] embed a single library inside another
>    project
> To: "trilinos-users at software.sandia.gov"
>    <trilinos-users at software.sandia.gov>
> Message-ID:
>    <AB48A31C4EC97E498F4235B7CEF74A1976B219A538 at MBX00.d.ethz.ch>
> Content-Type: text/plain; charset=iso-8859-1
> 
> Hello all,
> 
> I am using the Zoltan library and would like to add it as a subdirectory of another project - without the rest of trilinos.
> 
> Are there any CMake examples out there of projects that do this. I had a quick look, but the number of trilinos specific macros is quite large and I wonder if anyone has been though this process already and collected the required stuff into a simple to use bundle.
> 
> thanks
> 
> JB
> 
> 
> -- 
> John Biddiscombe,??????????????????????????? email:biddisco @ cscs.ch
> http://www.cscs.ch/
> CSCS, Swiss National Supercomputing Centre? | Tel:? +41 (91) 610.82.07
> Via Cantonale, 6928 Manno, Switzerland????? | Fax:? +41 (91) 610.82.82
> 
> 
> 
> 
> 
> 
> 
> ------------------------------
> 
> _______________________________________________
> Trilinos-Users mailing list
> Trilinos-Users at software.sandia.gov
> http://software.sandia.gov/mailman/listinfo/trilinos-users
> 
> 
> End of Trilinos-Users Digest, Vol 66, Issue 16
> **********************************************
>

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