[Trilinos-Users] R: error executing Sundance

[Shota Soga]

Hi Andrea,

I think you should enable Exodus II when you install Sundance.

Or, you can use triangle mesh file in stead of exodus file reader.


Hope this will help you.

Shota

On Thu, Dec 8, 2011 at 11:35 AM, Andrea Penza <pepe.aero at alice.it> wrote:

> Thanks to the answer of Alberto i'm now able to execute my Sundance
> application.
> It still remains a problem. trying to use ExodusII mesh file the system
> report this error while i call the ExodusMeshReader object:
>
>
> Throw number = 1
>
> Throw test that evaluated to true: true
>
> ExodusMeshReader called for a build without ExodusII
> caught in
> /home/andre/Projects/trilinos-10.8.3-Source/packages/src-std-mesh/Sources/SundanceMeshSource.cpp:69
>
> Is someone understands what it means?
> Thank you all so much again.
> Kind regards,
>
> Andrea
>
> -- msg. originale --
> Oggetto: Re: [Trilinos-Users] error executing Sundance
> Da: Alberto F. Martín-Huertas <amartin at cimne.upc.edu>
> Data: 08/12/2011 12:15
>
>  Hi Andrea,
>
>  did you add /home/andre/Projects/netcdf-4.1.3/BUILD/lib
>  to the LD_LIBRARY_PATH environment variable ?
>
>  Regards,
>  Alberto
>
>
>  On Thu, 8 Dec 2011 11:25:29 +0100, Andrea Penza wrote:
> > Hi all,
> >
> > i'm trying to configure Trilinos to use Sundance working with MPI,
> > ExodusII library and Netcdf. All are installed on my system.
> > I've run a configuration script like this:
> >
> > EXTRA_ARGS=$@
> >
> > cmake
> >  -D CMAKE_BUILD_TYPE:STRING=DEBUG
> >  -D Trilinos_ENABLE_TESTS:BOOL=ON
> >  -D Trilinos_ENABLE_Sundance:BOOL=ON
> >  -D Trilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON
> >  -D Trilinos_ENABLE_TESTS:BOOL=ON
> >  -D TPL_ENABLE_MPI:BOOL=ON
> >  -D MPI_INCLUDE_DIRS:PATH=/usr/lib/openmpi/include
> >  -D
> >
> >
> MPI_LIBRARY_NAMES:STRING="mpi;mpi_cxx;mpi_f77;mpi_f90;openmpi_malloc;open-pal;open_rte;otf;vt;vt.fmpi;vt.mpi;vt.omp;vt.ompi"
> >
> >  -D MPI_LIBRARY_DIRS:PATH=/usr/lib/openmpi/lib
> >  -D TPL_ENABLE_Netcdf:BOOL=ON
> >  -D
> >
> > Netcdf_INCLUDE_DIRS:PATH=/home/andre/Projects/netcdf-4.1.3/BUILD/include
> >
> >  -D Netcdf_LIBRARY_NAMES:STRING="netcdf;netcdf_c++;netcdff;"
> >  -D
> > Netcdf_LIBRARY_DIRS:PATH=/home/andre/Projects/netcdf-4.1.3/BUILD/lib
> >  $EXTRA_ARGS
> >  ${TRILINOS_HOME}
> >
> > and the configuration was done successfully. Then i've built and
> > installed and all was ok.
> > My system is able to compile .cpp file and make .exe file but when a
> > try to run the exe file it reports this error:
> >
> > "error while loading shared libraries: libnetcdf.so.7: cannot open
> > shared object file: No such file or directory."
> >
> > I've checked that the library libnetcdf.so.7 is present in my system
> > at the path i've insert, /home/andre/Projects/netcdf-4.1.3/BUILD/lib
> > .
> > Has someone an idea of waht could be the problem? Thank you very
> > much, your help is really appreciated!
> > Kind regards,
> >
> > Andrea
>
> --
>  Alberto F. Martín-Huertas
>  Centre Internacional de Mètodes Numèrics a l'Enginyeria (CIMNE)
>  Parc Mediterrani de la Tecnologia, UPC
>  Esteve Terrades 5, Building C3, Office 210,
>  08860 Castelldefels (Barcelona, Spain)
>  Tel.: (+34) 9341 34223
>  e-mail: amartin at cimne.upc.edu
>
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-- 
Shota Soga
Graduate Assistant at North Carolina State University

Email: ssoga at ncsu.edu
URL:http://abdelk.ne.ncsu.edu/<http://abdelk.ne.ncsu.edu/wiki/index.php/Shota_Soga>
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