[Trilinos-Users] CentOS 5.5/Intel MPI build error

[Dave Wade-Stein]

Still trying to build Trilinos 10.2.0 on CentOS 5.5 system, using Intel MPI and getting " The C++ compiler "/opt/intel/impi/3.2.0.011/bin64/mpicxx" is not able to
 compile a simple test program."

My CMake command is

cmake -DCMAKE_INSTALL_PREFIX:PATH=/scratch/contrib/trilinos-10.2.0-par -DCMAKE_BUILD_TYPE:STRING=RELEASE -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DTPL_ENABLE_MPI:BOOL=ON -DCMAKE_C_COMPILER:FILEPATH='mpicc' -DCMAKE_CXX_COMPILER:FILEPATH='mpicxx' -DCMAKE_Fortran_COMPILER:FILEPATH='mpif77' -DCMAKE_C_FLAGS:STRING='-fPIC' -DCMAKE_CXX_FLAGS:STRING='-fPIC' -DCMAKE_Fortran_FLAGS:STRING='-fPIC' -DTrilinos_ENABLE_Amesos:BOOL=ON -DTrilinos_ENABLE_ML:BOOL=ON -DTrilinos_ENABLE_AztecOO:BOOL=ON -DTrilinos_ENABLE_EpetraExt:BOOL=ON -DTrilinos_ENABLE_Epetra:BOOL=ON -DTrilinos_ENABLE_Triutils:BOOL=ON -DTrilinos_ENABLE_Teuchos:BOOL=ON -DTrilinos_ENABLE_Ifpack:BOOL=ON -DTrilinos_ENABLE_Galeri:BOOL=ON -DDART_TESTING_TIMEOUT:STRING=600  -DBUILD_SHARED_LIBS:BOOL=ON -DLAPACK_LIBRARY_DIRS:PATH='/scratch/contrib/atlas-3.8.3-ser/lib' -DLAPACK_LIBRARY_NAMES:STRING='lapack' -DBLAS_LIBRARY_DIRS:PATH='/scratch/contrib/atlas-3.8.3-ser/lib' -DBLAS_LIBRARY_NAMES:STRING='cblas;atlas' /scratch/xuser/extdws/vpall-4.2/builds/trilinos-10.2.0  

My previous attempt at the command had 

-DTrilinos_EXTRA_LINK_FLAGS:STRING='-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.1.1' 

which I removed as per a suggestion on this list. But it doesn't seem to change the output (see below). Any help would be appreciated!

Dave 

...
Final set of enabled packages:  Teuchos ThreadPool Kokkos Epetra Zoltan Triutils Tpetra EpetraExt Isorropia AztecOO Galeri Amesos Ifpack ML 14
...

Probing the environment ...

-- CMAKE_BUILD_TYPE='RELEASE'
-- MPI_USE_COMPILER_WRAPPERS='ON'
-- Leaving current CMAKE_C_COMPILER=mpicc since it is already set!
-- Leaving current CMAKE_CXX_COMPILER=mpicxx since it is already set!
-- Leaving current CMAKE_Fortran_COMPILER=mpif77 since it is already set!
-- MPI_EXEC='/opt/intel/impi/3.2.0.011/bin64/mpiexec'
-- MPI_EXEC='/opt/intel/impi/3.2.0.011/bin64/mpiexec'
-- CMAKE_C_COMPILER_ID='Intel'
-- The CXX compiler identification is Intel
-- Check for working CXX compiler: /opt/intel/impi/3.2.0.011/bin64/mpicxx
-- Check for working CXX compiler: /opt/intel/impi/3.2.0.011/bin64/mpicxx -- broken
CMake Error at /scratch/contrib/cmake-2.8.2-ser/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake:45 (MESSAGE):
 The C++ compiler "/opt/intel/impi/3.2.0.011/bin64/mpicxx" is not able to
 compile a simple test program.

 It fails with the following output:

  Change Dir: /HOME01/XUSER/extdws/scratch/vpall-4.2/builds/trilinos-10.2.0/par/CMakeFiles/CMakeTmp



 Run Build Command:/usr/bin/gmake "cmTryCompileExec/fast"

 /usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make
 CMakeFiles/cmTryCompileExec.dir/build

 gmake[1]: Entering directory
 `/scratch/xuser/extdws/vpall-4.2/builds/trilinos-10.2.0/par/CMakeFiles/CMakeTmp'


 /scratch/contrib/cmake-2.8.2-ser/bin/cmake -E cmake_progress_report
 /HOME01/XUSER/extdws/scratch/vpall-4.2/builds/trilinos-10.2.0/par/CMakeFiles/CMakeTmp/CMakeFiles
 1

 Building CXX object CMakeFiles/cmTryCompileExec.dir/testCXXCompiler.cxx.o

 /opt/intel/impi/3.2.0.011/bin64/mpicxx -fPIC -o
 CMakeFiles/cmTryCompileExec.dir/testCXXCompiler.cxx.o -c
 /HOME01/XUSER/extdws/scratch/vpall-4.2/builds/trilinos-10.2.0/par/CMakeFiles/CMakeTmp/testCXXCompiler.cxx


 Linking CXX executable cmTryCompileExec

 /scratch/contrib/cmake-2.8.2-ser/bin/cmake -E cmake_link_script
 CMakeFiles/cmTryCompileExec.dir/link.txt --verbose=1

 /opt/intel/impi/3.2.0.011/bin64/mpicxx -fPIC
 CMakeFiles/cmTryCompileExec.dir/testCXXCompiler.cxx.o -o cmTryCompileExec
 -rdynamic


 CMakeFiles/cmTryCompileExec.dir/testCXXCompiler.cxx.o:(.gnu.linkonce.d.DW.ref.__gxx_personality_v0+0x0):
 undefined reference to `__gxx_personality_v0'

 /opt/intel/impi/3.2.0.011/lib64/libmpiic4.so: undefined reference to
 `operator delete[](void*)'

 /opt/intel/impi/3.2.0.011/lib64/libmpiic4.so: undefined reference to
 `operator new(unsigned long)'

 /opt/intel/impi/3.2.0.011/lib64/libmpiic4.so: undefined reference to
 `operator delete(void*)'

 /opt/intel/impi/3.2.0.011/lib64/libmpiic4.so: undefined reference to
 `operator new[](unsigned long)'

 /opt/intel/impi/3.2.0.011/lib64/libmpiic4.so: undefined reference to
 `__cxa_pure_virtual'

 /opt/intel/impi/3.2.0.011/lib64/libmpiic4.so: undefined reference to
 `__cxa_allocate_exception'

 /opt/intel/impi/3.2.0.011/lib64/libmpiic4.so: undefined reference to
 `__cxa_throw'

 /opt/intel/impi/3.2.0.011/lib64/libmpiic4.so: undefined reference to
 `vtable for __cxxabiv1::__class_type_info'

 /opt/intel/impi/3.2.0.011/lib64/libmpiic4.so: undefined reference to
 `vtable for __cxxabiv1::__si_class_type_info'

 gmake[1]: *** [cmTryCompileExec] Error 1

 gmake[1]: Leaving directory
 `/scratch/xuser/extdws/vpall-4.2/builds/trilinos-10.2.0/par/CMakeFiles/CMakeTmp'


 gmake: *** [cmTryCompileExec/fast] Error 2


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