[Trilinos-Users] Teuchos_MPIReduction
Marco Morandini
morandini at aero.polimi.it
Wed Mar 1 09:47:37 MST 2006
> Hi Marco,
>
> I can trace back the inclusion of "Teuchos_ConfigDefs.hpp" through the
> "Teuchos_RefCountPtr.hpp" file at the top of
> "Teuchos_MPIReductionOpBase.hpp". While it's not direct, most
compilers can
> pick up this definition this way.
You are right! Apologize for that.
I'll try to understand what's going on.
Perhaps I'm doing something wrong, because
my trilinos compilation are never a smooth
experience.
> If you include "Teuchos_ConfigDefs.hpp"
> at the top of "Teuchos_MPIReductionOpBase.hpp" before the
>
> #ifdef HAVE_MPI
>
> does the compile problem go away?
Yes, that's exactly what I've done
before writing the first mail.
> Which compilers are you using
On a SuSE 10.0:
gcc version 4.0.2 20050901 (prerelease) (SUSE Linux)
and what
> does your Trilinos configuration look like (i.e. ./configure --enable-mpi
> ...)?
I set these variables
-------------------------------------------------------
CPPFLAGS="\
-I/home/marco/Math/UFsparse/UMFPACK/Include \
-I/home/marco/Math/UFsparse/AMD/Include \
-I/home/marco/Math/Taucs/src \
-I/home/marco/Math/Taucs/build/linux \
-I/home/marco/Math/SuperLU_3.0/SRC \
-I/home/marco/Math/metis-4.0/Lib \
-I/home/marco/local/openmpi-1.0.1/include \
-I/home/marco/local/openmpi-1.0.1/include/openmpi/ompi \
"
CFLAGS=$CPPFLAGS" -g -Wall -O2"
#CFLAGS="-g -Wall"
CXXFLAGS=$CFLAGS
CC=gcc
CXX=g++
F77="g77 -O"
LDFLAGS="-rdynamic \
-L/home/marco/Math/UFsparse/UMFPACK/Lib \
-L/home/marco/Math/UFsparse/AMD/Lib \
-L/home/marco/Math/LAPACK \
-L/home/marco/Math/ATLAS/lib/Linux_ATHLONSSE1 \
-L/home/marco/Math/Taucs/lib/linux \
-L/home/marco/Math/Taucs/external/lib/linux \
-L/home/marco/Math/SuperLU_3.0 \
-L/home/marco/Math/metis-4.0 \
-L/home/marco/Math/ARPACK \
-L/home/marco/local/openmpi-1.0.1/lib \
-lumfpack \
-lamd \
-llapack \
-lcblas -lf77blas -latlas \
-lexpat \
"
export CPPFLAGS CFLAGS CXXFLAGS LDFLAGS CC CXX F77 LDFLAGS
-------------------------------------------------------
and then configure with
../configure \
--enable-mpi \
--with-mpi-compilers \
--enable-teuchos \
--enable-teuchos-extended \
--enable-teuchos-complex \
--enable-teuchos-expat \
--enable-thyra \
--enable-epetra \
--enable-epetraext \
--enable-amesos \
--enable-amesos-umfpack \
--enable-amesos-thyra \
--enable-ifpack \
--enable-aztecoo \
--enable-ml \
--enable-triutils \
--enable-python \
--with-trilinos \
--enable-nox \
--enable-nox-epetra \
--enable-nox-lapack \
--enable-new_package \
--enable-pytrilinos \
--prefix=/home/marco/local/trilinos-6.0.14 \
--enable-expat
>
> Thanks,
> Heidi
> Hi Marco,
>
> I've given the problem a second thought and here are some ideas on what may
> be happening.
>
> 1) If you are compiling against an installed version of Trilinos, did you
> include -DHAVE_CONFIG_H on the compile line? This preprocessing flag is
> essential for the Teuchos_ConfigDefs.hpp file to know that Trilinos was
> autoconf'd and include the Teuchos_config.h file.
>
> 2) Did you configure Trilinos with --enable-mpi, or anything that would
> indicate you were using mpi compilers?
>
> If both these ideas are useless, then let me know what your set-up is:
>
> -compilers
> -computing platform
> -configure line for Trilinos (./configure --enable-mpi ...)
> -are you building Trilinos libraries, or building AGAINST Trilinos
> libraries?
I'm building trilinos libraries on a SuSE 10.0
with the default compiler, and
open-mpi 1.0.2 alpha 9
tar -zxf trilinos-6.0.14.tar.gz
cd trilinos-6.0.14
apply_a_patch_needed_to_build
mkdir Build
cd Build
../configure .....
> -any errors/warnings you see in the compilation
>
this will take some time, and I will have to
start with an unmodified source tree.
In the meantime, I'm attaching the the patch.
Another quirk is that it seems (but at this point I'm not
sure of anything) that the gnu make was not detected as a gnu make.
For this reason (I think) I ended up with
----------------------
# NOX_INCLUDES = $(shell perl
/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/nox/../../../packages/nox/config/strip_dup_incl_paths.pl
$(NOX_INCLUDES_BASE))
NOX_INCLUDES = $(NOX_INCLUDES_BASE)
----------------------
instead of
----------------------
NOX_INCLUDES = $(shell perl
/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/nox/../../../packages/nox/config/strip_dup_incl_paths.pl
$(NOX_INCLUDES_BASE))
#NOX_INCLUDES = $(NOX_INCLUDES_BASE)
----------------------
in the file Build/packages/nox/Makefile.export.nox
this means that a very long command line is passed to swig
(see the attached make.log);
swig, in turn, segfaults with such command line.
Swig is SWIG Version 1.3.24
More later, with the clean source tree.
Thanks again,
Marco
-------------- next part --------------
--- trilinos-6.0.7/packages/epetraext/python/src/EpetraExt.i 2005-08-04 22:57:34.000000000 +0200
+++ ../trilinos-6.0.7/packages/epetraext/python/src/EpetraExt.i 2005-11-17 17:37:51.000000000 +0100
@@ -72,6 +72,10 @@
#include "Epetra_NumPyVector.h"
#include "Epetra_PyOperator.h"
#include "Epetra_PyRowMatrix.h"
+//Marco Morandini changes
+#include "Epetra_VbrMatrix.h"
+#include "Epetra_FECrsMatrix.h"
+#include "Epetra_LocalMap.h"
// EpetraExt includes
#include "EpetraExt_Version.h"
--- trilinos-6.0.7/packages/ifpack/python/src/IFPACK.i 2005-08-01 06:43:34.000000000 +0200
+++ ../trilinos-6.0.7/packages/ifpack/python/src/IFPACK.i 2005-11-17 17:38:08.000000000 +0100
@@ -72,6 +72,9 @@
#include "Epetra_Operator.h"
#include "Epetra_PyOperator.h"
#include "Epetra_PyRowMatrix.h"
+//Marco Morandini changes
+#include "Epetra_FECrsMatrix.h"
+#include "Epetra_LocalMap.h"
#include "Teuchos_ParameterList.hpp"
--- trilinos-6.0.7/packages/ml/python/src/ML.i 2005-08-01 06:44:08.000000000 +0200
+++ ../trilinos-6.0.7/packages/ml/python/src/ML.i 2005-11-17 17:38:20.000000000 +0100
@@ -74,6 +74,8 @@
#include "Epetra_PyRowMatrix.h"
#include "ml_MultiLevelPreconditioner.h"
#include "Teuchos_ParameterList.hpp"
+//Marco Morandini changes
+#include "Epetra_LocalMap.h"
extern "C" {
// on some MAC OS X with LAM/MPI _environ() is not found,
--- trilinos-6.0.7/packages/aztecoo/python/src/AztecOO.i 2005-08-01 06:41:58.000000000 +0200
+++ ../trilinos-6.0.7/packages/aztecoo/python/src/AztecOO.i 2005-11-17 17:41:31.000000000 +0100
@@ -91,6 +91,8 @@
#include "Epetra_NumPyVector.h"
#include "Epetra_PyOperator.h"
#include "Epetra_PyRowMatrix.h"
+//Marco Morandini changes
+#include "Epetra_FECrsMatrix.h"
// AztecOO includes
#include "AztecOO.h"
--- trilinos-6.0.7/packages/triutils/python/src/Triutils.i 2006-02-02 13:12:16.000000000 +0100
+++ ../trilinos-6.0.7/packages/triutils/python/src/Triutils.i 2006-02-02 13:12:27.000000000 +0100
@@ -42,6 +42,9 @@
#include "Trilinos_Util_CrsMatrixGallery.h"
#include "Trilinos_Util_Version.h"
#include "Epetra_NumPyVector.h"
+//Marco Morandini changes
+#include "Epetra_FECrsMatrix.h"
+#include "Epetra_LocalMap.h"
void Trilinos_Util_ReadHb2Epetra(char *data_file,
const Epetra_Comm &comm,
Epetra_Map *& map,
-------------- next part --------------
/usr/bin/swig -c++ -python -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/nox/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/nox/../../../packages/nox/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/nox/../../../packages/nox/src-lapack -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/nox/../../../packages/nox/src-epetra -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/nox/../../../packages/nox/src-petsc -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/nox/../../../packages/nox/src-belos -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/nox/../../../packages/nox/src-tsf -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/teuchos/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/teuchos/../../../packages/teuchos/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/epetra/../../../packages/epetra/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/epetra/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support/mpi -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support/serial -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/ana_support -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/extended_interfaces -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/interfaces -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/rtop/ops_lib -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/rtop/base -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/utils -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/teuchos/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/teuchos/../../../packages/teuchos/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/epetra/../../../packages/epetra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/epetra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/aztecoo/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/aztecoo/../../../packages/aztecoo/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/epetra/../../../packages/epetra/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/epetra/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support/mpi -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support/serial -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/ana_support -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/extended_interfaces -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/interfaces -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/rtop/ops_lib -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/rtop/base -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/utils -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/teuchos/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/teuchos/../../../packages/teuchos/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/epetra/../../../packages/epetra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/epetra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/triutils/../../../packages/triutils/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/triutils/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/epetra/../../../packages/epetra/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/epetra/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support/mpi -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support/serial -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/ana_support -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/extended_interfaces -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/interfaces -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/rtop/ops_lib -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/rtop/base -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/utils -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/teuchos/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/teuchos/../../../packages/teuchos/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/epetra/../../../packages/epetra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/epetra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/aztecoo/../../../packages/aztecoo/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/aztecoo/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support/mpi -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support/serial -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/ana_support -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/extended_interfaces -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/interfaces -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/rtop/ops_lib -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/rtop/base -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/utils -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/teuchos/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/teuchos/../../../packages/teuchos/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/teuchos/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/teuchos/../../../packages/teuchos/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/ifpack/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/ifpack/../../../packages/ifpack/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/epetra/../../../packages/epetra/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/epetra/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support/mpi -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/adapter_support/serial -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/ana_support -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/extended_interfaces -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/operator_vector/interfaces -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/rtop/ops_lib -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/ana/rtop/base -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src/utils -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/../../../packages/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/thyra/src -I/home/marco/Programmi/Trilinos/trilinos-6.0.14/Build/packages/teuchos/src 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