[Trilinos-Users] [EXTERNAL] building app with trilinos using cmake

[Phipps, Eric T]

A number of people have run into this issue.  In CMake you can easily remove the duplicate libraries via:

LIST(REVERSE Trilinos_LIBRARIES)
LIST(REMOVE_DUPLICATES Trilinos_LIBRARIES)
LIST(REVERSE Trilinos_LIBRARIES)

Why Trilinos doesn’t just do this for you is beyond me.

-Eric

From: Trilinos-Users <trilinos-users-bounces at trilinos.org> on behalf of Wen Yan <wenyan4work at gmail.com>
Date: Wednesday, March 27, 2019 at 2:20 PM
To: "Rajamanickam, Sivasankaran" <srajama at sandia.gov>
Cc: "trilinos-users at trilinos.org" <trilinos-users at trilinos.org>
Subject: Re: [Trilinos-Users] [EXTERNAL] building app with trilinos using cmake

Hi Siva,

Yes, and this is the part I do not understand.
If I just compile the Trilinos demo using cmake:
https://github.com/trilinos/Trilinos/tree/master/demos/buildAgainstTrilinos

I got the same behavior, a very long list with the same files multiple times.
What should I do to clean up the long list?

Thank you,
Wen Yan


On Wed, Mar 27, 2019 at 4:15 PM Rajamanickam, Sivasankaran <srajama at sandia.gov<mailto:srajama at sandia.gov>> wrote:

Wen Yan

  You seem to have the same files in the list multiple times.



-Siva



________________________________
From: Trilinos-Users <trilinos-users-bounces at trilinos.org<mailto:trilinos-users-bounces at trilinos.org>> on behalf of Wen Yan <wenyan4work at gmail.com<mailto:wenyan4work at gmail.com>>
Sent: Wednesday, March 27, 2019 2:05 PM
To: trilinos-users at trilinos.org<mailto:trilinos-users at trilinos.org>
Subject: [EXTERNAL] [Trilinos-Users] building app with trilinos using cmake

Dear mail-list,

I have a question about building my app with trilinos using cmake. In the linking stage, I got an error because too many files are in the link line.

The part related to Trilinos in my simple CMakeLists.txt file looks like this:
# Get Trilinos as one entity
find_package(Trilinos REQUIRED)
add_executable(ZDD_test ZDD_test.cpp)
target_compile_options(ZDD_test PRIVATE ${OpenMP_CXX_FLAGS})
target_include_directories(ZDD_test PRIVATE ${PROJECT_SOURCE_DIR} ${Trilinos_INCLUDE_DIRS})
target_link_libraries(ZDD_test PRIVATE ${Trilinos_LIBRARIES})
target_link_libraries(ZDD_test PRIVATE ${Trilinos_TPL_LIBRARIES})
target_link_libraries(ZDD_test PRIVATE OpenMP::OpenMP_CXX)
target_link_libraries(ZDD_test PRIVATE MPI::MPI_CXX)

Then in the linking step, the link line is super long (attached to the end of this email).
The linker 'ld' complains about 'Too many open files'. The reason appears to be that in the end of `TrilinosConfig.cmake` file, there are lines like this for each enabled package:
include("${CMAKE_CURRENT_LIST_DIR}/../ROL/ROLConfig.cmake")
include("${CMAKE_CURRENT_LIST_DIR}/../Tempus/TempusConfig.cmake")
include("${CMAKE_CURRENT_LIST_DIR}/../MueLu/MueLuConfig.cmake")
include("${CMAKE_CURRENT_LIST_DIR}/../NOX/NOXConfig.cmake")
include("${CMAKE_CURRENT_LIST_DIR}/../Intrepid2/Intrepid2Config.cmake")

Then all internel and external (TPL) packages are repeatedly and recursively appended to the two variables Trilinos_LIBRARIES and Trilinos_TPL_LIBRARIES. A lot of redundent library names are appended there.

I am using the most recent 12-14-1 release. Did I do anything wrong in writing the CMakeLists.txt file?

The Trilinos build had no issues. All tests passed and I can compile and run my program with an old-style Makefile without any issues.

Thank you,
Wen Yan

[ 83%] Linking CXX executable ZDD_test
cd /home/wyan/Workspace/SimToolbox/build/Trilinos && /cm/shared/sw/pkg/devel/cmake/3.13.2/bin/cmake -E cmake_link_script CMakeFiles/ZDD_test.dir/link.txt --verbose=1
/cm/shared/sw/pkg/devel/openmpi/2.1.6-hfi-slurm17.11/bin/mpicxx     CMakeFiles/ZDD_test.dir/ZDD_test.cpp.o  -o ZDD_test /home/wyan/local/lib/librol.a /home/wyan/local/lib/libtempus.a /home/wyan/local/lib/libmuelu-adapters.a /home/wyan/local/lib/libmuelu-interface.a /home/wyan/local/lib/libmuelu.a /home/wyan/local/lib/liblocathyra.a /home/wyan/local/lib/liblocaepetra.a /home/wyan/local/lib/liblocalapack.a /home/wyan/local/lib/libloca.a /home/wyan/local/lib/libnoxepetra.a /home/wyan/local/lib/libnoxlapack.a /home/wyan/local/lib/libnox.a /home/wyan/local/lib/libintrepid2.a /home/wyan/local/lib/libintrepid.a /home/wyan/local/lib/libteko.a /home/wyan/local/lib/libstratimikos.a /home/wyan/local/lib/libstratimikosbelos.a /home/wyan/local/lib/libstratimikosamesos2.a /home/wyan/local/lib/libstratimikosaztecoo.a /home/wyan/local/lib/libstratimikosamesos.a /home/wyan/local/lib/libstratimikosml.a /home/wyan/local/lib/libstratimikosifpack.a /home/wyan/local/lib/libifpack2-adapters.a 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/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosremainder.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosnumerics.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparameterlist.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkosalgorithms.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscontainers.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkostsqr.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libtpetraclassiclinalg.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libtpetraclassicnodeapi.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libtpetraclassic.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoskernels.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscompat.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosremainder.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosnumerics.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparameterlist.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkosalgorithms.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscontainers.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libtpetraclassiclinalg.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libtpetraclassicnodeapi.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libtpetraclassic.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscompat.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosremainder.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosnumerics.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparameterlist.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libtriutils.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libepetra.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscompat.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosremainder.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosnumerics.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparameterlist.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libshards.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libzoltan.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libepetra.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscompat.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosremainder.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosnumerics.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparameterlist.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libminitensor.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libsacado.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoskernels.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscompat.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosremainder.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosnumerics.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparameterlist.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkosalgorithms.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscontainers.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libsacado.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscompat.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosremainder.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosnumerics.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparameterlist.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/librtop.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosnumerics.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparameterlist.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoskernels.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkosalgorithms.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscontainers.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscompat.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosremainder.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosnumerics.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparameterlist.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscompat.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparameterlist.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoskokkoscompat.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparameterlist.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosremainder.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosnumerics.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparameterlist.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscomm.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparameterlist.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparameterlist.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchosparser.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libteuchoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkosalgorithms.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscontainers.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkosalgorithms.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscontainers.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscontainers.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libkokkoscore.a: Too many open files
/usr/bin/ld: cannot find /home/wyan/local/lib/libgtest.a: Too many open files
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find -lmkl_rt
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find /usr/lib64/libdl.so: Too many open files
/usr/bin/ld: cannot find /cm/shared/sw/pkg/devel/gcc/8.2.0/lib64/libgomp.so: Too many open files
/usr/bin/ld: cannot find -lmpi
/usr/bin/ld: cannot find -lstdc++
/usr/bin/ld: cannot find -lm
/usr/bin/ld: cannot find -lgcc_s
/usr/bin/ld: cannot find -lgcc
/usr/bin/ld: cannot find -lpthread
/usr/bin/ld: cannot find -lc
/usr/bin/ld: cannot find -lgcc_s
/usr/bin/ld: cannot find -lgcc
/usr/bin/ld: cannot find /cm/shared/sw/pkg/devel/gcc/8.2.0/lib/gcc/x86_64-pc-linux-gnu/8.2.0/crtend.o: Too many open files
/usr/bin/ld: cannot find /lib/../lib64/crtn.o: Too many open files
collect2: error: ld returned 1 exit status

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