[Trilinos-Users] [EXTERNAL] Re: Problems of configure trilinos
Bartlett, Roscoe A
rabartl at sandia.gov
Mon Oct 1 19:51:35 EDT 2018
I can’t reproduce this configure failure with our local GCC 7.3.0 env described at:
https://github.com/trilinos/Trilinos/wiki/SEMS-Dev-Env
I loaded the GCC 7.3.0 compiler using:
$ module purge
$ module load sems-env
$ module load sems-gcc/7.3.0
and then I did a configure with:
$ cmake -DCMAKE_C_COMPILER=gcc \
-DTrilinos_ENABLE_TESTS=ON \
-DTrilinos_ENABLE_TeuchosCore=ON \
/scratch/rabartl/Trilinos.base/Trilinos \
&> configure.out
and this showed the configure output:
…
-- The CXX compiler identification is GNU 7.3.0
-- Check for working CXX compiler: /projects/sems/install/rhel6-x86_64/sems/compiler/gcc/7.3.0/base/bin/g++
-- Check for working CXX compiler: /projects/sems/install/rhel6-x86_64/sems/compiler/gcc/7.3.0/base/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- CMAKE_CXX_COMPILER_ID='GNU'
-- CMAKE_CXX_COMPILER_VERSION='7.3.0'
…
-- Performing Test MATH_LIBRARY_IS_SUPPLIED
-- Performing Test MATH_LIBRARY_IS_SUPPLIED - Success
-- Performing Test FINITE_VALUE_HAVE_GLOBAL_ISNAN
-- Performing Test FINITE_VALUE_HAVE_GLOBAL_ISNAN - Success
-- Performing Test FINITE_VALUE_HAVE_STD_ISNAN
-- Performing Test FINITE_VALUE_HAVE_STD_ISNAN - Success
-- Performing Test FINITE_VALUE_HAVE_GLOBAL_ISINF
-- Performing Test FINITE_VALUE_HAVE_GLOBAL_ISINF - Success
-- Performing Test FINITE_VALUE_HAVE_STD_ISINF
-- Performing Test FINITE_VALUE_HAVE_STD_ISINF – Success
…
Configuring individual enabled Trilinos packages ...
Processing enabled package: Kokkos (Core)
LEGACY STUFF GETTING CALLED
Processing enabled package: Teuchos (Core, Tests, Examples)
…
-- Configuring done
-- Generating done
This is a pretty basic Trilinos configuration but it runs the configure-time isnan() test you show.
Could there be something wrong with your GCC 7.3.0 installation or your env?
-Ross
Dr. Roscoe A. Bartlett, PhD
http://www.cs.sandia.gov/cr-rabartl
Sandia National Laboratories
From: Trilinos-Users [mailto:trilinos-users-bounces at trilinos.org] On Behalf Of Haohui XIN
Sent: Monday, October 01, 2018 1:26 PM
To: trilinos-users at trilinos.org
Subject: [EXTERNAL] Re: [Trilinos-Users] Problems of configure trilinos
Dear Balakrishnan,
Many thanks for your response. My gcc version is 7.3.0. I have problems to download newest version. I can download the source from Github. But I still meet the problems.
BR, Haohui
> ######################################################################
> configure command
> ######################################################################
rm -f CMakeCache.txt
cmake -D CMAKE_INSTALL_PREFIX:PATH=/usr/local/trilinos \
-D MPI_BASE_DIR:PATH="/usr/local/openmpi/" \
-D CMAKE_CXX_FLAGS:STRING="-O2 -std=c++11 -pedantic -ftrapv -Wall -Wno-long-long" \
-D CMAKE_BUILD_TYPE:STRING=RELEASE \
-D Trilinos_WARNINGS_AS_ERRORS_FLAGS:STRING="" \
-D Trilinos_ENABLE_ALL_PACKAGES:BOOL=OFF \
-D Trilinos_ENABLE_Teuchos:BOOL=ON \
-D Trilinos_ENABLE_Shards:BOOL=ON \
-D Trilinos_ENABLE_Sacado:BOOL=ON \
-D Trilinos_ENABLE_Epetra:BOOL=ON \
-D Trilinos_ENABLE_EpetraExt:BOOL=ON \
-D Trilinos_ENABLE_Ifpack:BOOL=ON \
-D Trilinos_ENABLE_AztecOO:BOOL=ON \
-D Trilinos_ENABLE_Amesos:BOOL=ON \
-D Trilinos_ENABLE_Anasazi:BOOL=ON \
-D Trilinos_ENABLE_Belos:BOOL=ON \
-D Trilinos_ENABLE_ML:BOOL=ON \
-D Trilinos_ENABLE_Phalanx:BOOL=ON \
-D Trilinos_ENABLE_Intrepid:BOOL=ON \
-D Trilinos_ENABLE_NOX:BOOL=ON \
-D Trilinos_ENABLE_Stratimikos:BOOL=ON \
-D Trilinos_ENABLE_Thyra:BOOL=ON \
-D Trilinos_ENABLE_Rythmos:BOOL=ON \
-D Trilinos_ENABLE_MOOCHO:BOOL=ON \
-D Trilinos_ENABLE_TriKota:BOOL=OFF \
-D Trilinos_ENABLE_Stokhos:BOOL=ON \
-D Trilinos_ENABLE_Zoltan:BOOL=ON \
-D Trilinos_ENABLE_Piro:BOOL=ON \
-D Trilinos_ENABLE_Teko:BOOL=ON \
-D Trilinos_ENABLE_SEACASIoss:BOOL=ON \
-D Trilinos_ENABLE_SEACAS:BOOL=ON \
-D Trilinos_ENABLE_SEACASBlot:BOOL=ON \
-D Trilinos_ENABLE_Pamgen:BOOL=ON \
-D Trilinos_ENABLE_EXAMPLES:BOOL=OFF \
-D Trilinos_ENABLE_TESTS:BOOL=ON \
-D TPL_ENABLE_HDF5:BOOL=ON \
-D HDF5_INCLUDE_DIRS:PATH="/usr/local/hdf5/include" \
-D HDF5_LIBRARY_DIRS:PATH="/usr/local/hdf5/lib" \
-D TPL_ENABLE_Netcdf:BOOL=ON \
-D Netcdf_INCLUDE_DIRS:PATH=/usr/local/netcdf/include \
-D Netcdf_LIBRARY_DIRS:PATH=/usr/local/netcdf/lib \
-D TPL_ENABLE_MPI:BOOL=ON \
-D TPL_ENABLE_BLAS:BOOL=ON \
-D TPL_ENABLE_LAPACK:BOOL=ON \
-D TPL_ENABLE_Boost:BOOL=ON \
-D Boost_INCLUDE_DIRS:PATH=/usr/local/boost/include \
-D Boost_LIBRARY_DIRS:PATH=/usr/local/boost/lib \
-D CMAKE_VERBOSE_MAKEFILE:BOOL=OFF \
-D Trilinos_VERBOSE_CONFIGURE:BOOL=OFF \
/home/xhh/Downloads/Trillinos/Trilinos-master
> #################################################################
> errors
> #################################################################
Performing C++ SOURCE FILE Test FINITE_VALUE_HAVE_GLOBAL_ISNAN failed with the following output:
Change Dir: /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_061e8/fast"
/usr/bin/make -f CMakeFiles/cmTC_061e8.dir/build.make CMakeFiles/cmTC_061e8.dir/build
make[1]: Entering directory '/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_061e8.dir/src.cxx.o
/usr/local/openmpi/bin/mpicxx -O2 -std=c++11 -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DFINITE_VALUE_HAVE_GLOBAL_ISNAN -O3 -DNDEBUG -o CMakeFiles/cmTC_061e8.dir/src.cxx.o -c /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’:
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:6:3: error: ‘isnan’ was not declared in this scope
isnan(x);
^~~~~
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:6:3: note: suggested alternative:
In file included from /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/cmath:639:5: note: ‘std::isnan’
isnan(_Tp __x)
^~~~~
CMakeFiles/cmTC_061e8.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_061e8.dir/src.cxx.o' failed
make[1]: *** [CMakeFiles/cmTC_061e8.dir/src.cxx.o] Error 1
make[1]: Leaving directory '/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_061e8/fast' failed
make: *** [cmTC_061e8/fast] Error 2
Source file was:
#include <cmath>
int main()
{
double x = 1.0;
isnan(x);
return 0;
}
Performing C++ SOURCE FILE Test FINITE_VALUE_HAVE_GLOBAL_ISINF failed with the following output:
Change Dir: /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_5bb0a/fast"
/usr/bin/make -f CMakeFiles/cmTC_5bb0a.dir/build.make CMakeFiles/cmTC_5bb0a.dir/build
make[1]: Entering directory '/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_5bb0a.dir/src.cxx.o
/usr/local/openmpi/bin/mpicxx -O2 -std=c++11 -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DFINITE_VALUE_HAVE_GLOBAL_ISINF -O3 -DNDEBUG -o CMakeFiles/cmTC_5bb0a.dir/src.cxx.o -c /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’:
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:6:3: error: ‘isinf’ was not declared in this scope
isinf(x);
^~~~~
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:6:3: note: suggested alternative:
In file included from /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/cmath:612:5: note: ‘std::isinf’
isinf(_Tp __x)
^~~~~
CMakeFiles/cmTC_5bb0a.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_5bb0a.dir/src.cxx.o' failed
make[1]: *** [CMakeFiles/cmTC_5bb0a.dir/src.cxx.o] Error 1
make[1]: Leaving directory '/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_5bb0a/fast' failed
make: *** [cmTC_5bb0a/fast] Error 2
Source file was:
#include <cmath>
int main()
{
double x = 1.0;
isinf(x);
return 0;
}
Performing C++ SOURCE FILE Test FINITE_VALUE_HAVE_GLOBAL_ISNAN failed with the following output:
Change Dir: /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_341e7/fast"
/usr/bin/make -f CMakeFiles/cmTC_341e7.dir/build.make CMakeFiles/cmTC_341e7.dir/build
make[1]: Entering directory '/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_341e7.dir/src.cxx.o
/usr/local/openmpi/bin/mpicxx -O2 -std=c++17 -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DFINITE_VALUE_HAVE_GLOBAL_ISNAN -o CMakeFiles/cmTC_341e7.dir/src.cxx.o -c /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’:
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:6:3: error: ‘isnan’ was not declared in this scope
isnan(x);
^~~~~
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:6:3: note: suggested alternative:
In file included from /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/cmath:639:5: note: ‘std::isnan’
isnan(_Tp __x)
^~~~~
CMakeFiles/cmTC_341e7.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_341e7.dir/src.cxx.o' failed
make[1]: *** [CMakeFiles/cmTC_341e7.dir/src.cxx.o] Error 1
make[1]: Leaving directory '/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_341e7/fast' failed
make: *** [cmTC_341e7/fast] Error 2
Source file was:
#include <cmath>
int main()
{
double x = 1.0;
isnan(x);
return 0;
}
Performing C++ SOURCE FILE Test FINITE_VALUE_HAVE_GLOBAL_ISINF failed with the following output:
Change Dir: /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_c7ad0/fast"
/usr/bin/make -f CMakeFiles/cmTC_c7ad0.dir/build.make CMakeFiles/cmTC_c7ad0.dir/build
make[1]: Entering directory '/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_c7ad0.dir/src.cxx.o
/usr/local/openmpi/bin/mpicxx -O2 -std=c++17 -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DFINITE_VALUE_HAVE_GLOBAL_ISINF -o CMakeFiles/cmTC_c7ad0.dir/src.cxx.o -c /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’:
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:6:3: error: ‘isinf’ was not declared in this scope
isinf(x);
^~~~~
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:6:3: note: suggested alternative:
In file included from /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/cmath:612:5: note: ‘std::isinf’
isinf(_Tp __x)
^~~~~
CMakeFiles/cmTC_c7ad0.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_c7ad0.dir/src.cxx.o' failed
make[1]: *** [CMakeFiles/cmTC_c7ad0.dir/src.cxx.o] Error 1
make[1]: Leaving directory '/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_c7ad0/fast' failed
make: *** [cmTC_c7ad0/fast] Error 2
Source file was:
#include <cmath>
int main()
{
double x = 1.0;
isinf(x);
return 0;
}
Performing C++ SOURCE FILE Test FINITE_VALUE_HAVE_GLOBAL_ISNAN failed with the following output:
Change Dir: /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_41096/fast"
/usr/bin/make -f CMakeFiles/cmTC_41096.dir/build.make CMakeFiles/cmTC_41096.dir/build
make[1]: Entering directory '/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_41096.dir/src.cxx.o
/usr/local/openmpi/bin/mpicxx -O2 -std=c++14 -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DFINITE_VALUE_HAVE_GLOBAL_ISNAN -o CMakeFiles/cmTC_41096.dir/src.cxx.o -c /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’:
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:6:3: error: ‘isnan’ was not declared in this scope
isnan(x);
^~~~~
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:6:3: note: suggested alternative:
In file included from /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/cmath:639:5: note: ‘std::isnan’
isnan(_Tp __x)
^~~~~
CMakeFiles/cmTC_41096.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_41096.dir/src.cxx.o' failed
make[1]: *** [CMakeFiles/cmTC_41096.dir/src.cxx.o] Error 1
make[1]: Leaving directory '/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_41096/fast' failed
make: *** [cmTC_41096/fast] Error 2
Source file was:
#include <cmath>
int main()
{
double x = 1.0;
isnan(x);
return 0;
}
Performing C++ SOURCE FILE Test FINITE_VALUE_HAVE_GLOBAL_ISINF failed with the following output:
Change Dir: /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_13f84/fast"
/usr/bin/make -f CMakeFiles/cmTC_13f84.dir/build.make CMakeFiles/cmTC_13f84.dir/build
make[1]: Entering directory '/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_13f84.dir/src.cxx.o
/usr/local/openmpi/bin/mpicxx -O2 -std=c++14 -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DFINITE_VALUE_HAVE_GLOBAL_ISINF -o CMakeFiles/cmTC_13f84.dir/src.cxx.o -c /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’:
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:6:3: error: ‘isinf’ was not declared in this scope
isinf(x);
^~~~~
/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:6:3: note: suggested alternative:
In file included from /home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
/usr/include/c++/7/cmath:612:5: note: ‘std::isinf’
isinf(_Tp __x)
^~~~~
CMakeFiles/cmTC_13f84.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_13f84.dir/src.cxx.o' failed
make[1]: *** [CMakeFiles/cmTC_13f84.dir/src.cxx.o] Error 1
make[1]: Leaving directory '/home/xhh/Downloads/Trillinos/build/CMakeFiles/CMakeTmp'
Makefile:126: recipe for target 'cmTC_13f84/fast' failed
make: *** [cmTC_13f84/fast] Error 2
Source file was:
#include <cmath>
int main()
{
double x = 1.0;
isinf(x);
return 0;
}
Balakrishnan, Ramesh <bramesh at alcf.anl.gov<mailto:bramesh at alcf.anl.gov>> 于2018年10月1日周一 上午12:56写道：
Which version of the gcc compiler is your MPI library built with? Also, why are you using trilinos version 11.6.2 and not the newer 12.x versions?
RB
> On Sep 28, 2018, at 5:29 PM, Haohui XIN <tjxinhaohui at gmail.com<mailto:tjxinhaohui at gmail.com>> wrote:
>
> Dear Staff,
>
> This is Haohui Xin. I am a Ph.D at Delft University and Technology. I am using trilinos for Peridigm. I could not configure it. Could you help me what is the problem for my configuration?
>
> I use following command to configure, but meet problems shown in bottom.
>
> ######################################################################
> configure command
> #####################################################################
> rm -f CMakeCache.txt
>
> cmake -D CMAKE_INSTALL_PREFIX:PATH=/usr/local/trilinos \
> -D CMAKE_AR="/usr/bin/ar" \
> -D MPI_BASE_DIR:PATH="/usr/local/openmpi/" \
> -D CMAKE_CXX_FLAGS:STRING="-O2 -std=c++11 -pedantic -ftrapv -Wall -Wno-long-long" \
> -D CMAKE_BUILD_TYPE:STRING=RELEASE \
> -D Trilinos_WARNINGS_AS_ERRORS_FLAGS:STRING="" \
> -D Trilinos_ENABLE_ALL_PACKAGES:BOOL=OFF \
> -D Trilinos_ENABLE_Teuchos:BOOL=ON \
> -D Trilinos_ENABLE_Shards:BOOL=ON \
> -D Trilinos_ENABLE_Sacado:BOOL=ON \
> -D Trilinos_ENABLE_Epetra:BOOL=ON \
> -D Trilinos_ENABLE_EpetraExt:BOOL=ON \
> -D Trilinos_ENABLE_Ifpack:BOOL=ON \
> -D Trilinos_ENABLE_AztecOO:BOOL=ON \
> -D Trilinos_ENABLE_Amesos:BOOL=ON \
> -D Trilinos_ENABLE_Anasazi:BOOL=ON \
> -D Trilinos_ENABLE_Belos:BOOL=ON \
> -D Trilinos_ENABLE_ML:BOOL=ON \
> -D Trilinos_ENABLE_Phalanx:BOOL=ON \
> -D Trilinos_ENABLE_Intrepid:BOOL=ON \
> -D Trilinos_ENABLE_NOX:BOOL=ON \
> -D Trilinos_ENABLE_Stratimikos:BOOL=ON \
> -D Trilinos_ENABLE_Thyra:BOOL=ON \
> -D Trilinos_ENABLE_Rythmos:BOOL=ON \
> -D Trilinos_ENABLE_MOOCHO:BOOL=ON \
> -D Trilinos_ENABLE_TriKota:BOOL=OFF \
> -D Trilinos_ENABLE_Stokhos:BOOL=ON \
> -D Trilinos_ENABLE_Zoltan:BOOL=ON \
> -D Trilinos_ENABLE_Piro:BOOL=ON \
> -D Trilinos_ENABLE_Teko:BOOL=ON \
> -D Trilinos_ENABLE_SEACASIoss:BOOL=ON \
> -D Trilinos_ENABLE_SEACAS:BOOL=ON \
> -D Trilinos_ENABLE_SEACASBlot:BOOL=ON \
> -D Trilinos_ENABLE_Pamgen:BOOL=ON \
> -D Trilinos_ENABLE_EXAMPLES:BOOL=OFF \
> -D Trilinos_ENABLE_TESTS:BOOL=ON \
> -D TPL_ENABLE_HDF5:BOOL=ON \
> -D HDF5_INCLUDE_DIRS:PATH="/usr/local/hdf5/include" \
> -D HDF5_LIBRARY_DIRS:PATH="/usr/local/hdf5/lib" \
> -D TPL_ENABLE_Netcdf:BOOL=ON \
> -D Netcdf_INCLUDE_DIRS:PATH=/usr/local/netcdf/include \
> -D Netcdf_LIBRARY_DIRS:PATH=/usr/local/netcdf/lib \
> -D TPL_ENABLE_MPI:BOOL=ON \
> -D TPL_ENABLE_BLAS:BOOL=ON \
> -D TPL_ENABLE_LAPACK:BOOL=ON \
> -D TPL_ENABLE_Boost:BOOL=ON \
> -D Boost_INCLUDE_DIRS:PATH=/usr/local/boost/include \
> -D Boost_LIBRARY_DIRS:PATH=/usr/local/boost/lib \
> -D CMAKE_VERBOSE_MAKEFILE:BOOL=OFF \
> -D Trilinos_VERBOSE_CONFIGURE:BOOL=OFF \
> /home/xhh/Downloads/Trillion/trilinos-11.6.2-Source
>
> #################################################################
> errors
> #################################################################
> Performing C++ SOURCE FILE Test FINITE_VALUE_HAVE_GLOBAL_ISNAN failed with the following output:
> Change Dir: /home/xhh/Downloads/Trillion/build/CMakeFiles/CMakeTmp
>
> Run Build Command:"/usr/bin/make" "cmTC_eb28e/fast"
> /usr/bin/make -f CMakeFiles/cmTC_eb28e.dir/build.make CMakeFiles/cmTC_eb28e.dir/build
> make[1]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/CMakeTmp'
> Building CXX object CMakeFiles/cmTC_eb28e.dir/src.cxx.o
> /usr/bin/mpicxx -O2 -std=c++11 -pedantic -ftrapv -Wall -Wno-long-long -DFINITE_VALUE_HAVE_GLOBAL_ISNAN -o CMakeFiles/cmTC_eb28e.dir/src.cxx.o -c /home/xhh/Downloads/Trillion/build/CMakeFiles/CMakeTmp/src.cxx
> /home/xhh/Downloads/Trillion/build/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’:
> /home/xhh/Downloads/Trillion/build/CMakeFiles/CMakeTmp/src.cxx:6:10: error: ‘isnan’ was not declared in this scope
> isnan(x);
> ^
> /home/xhh/Downloads/Trillion/build/CMakeFiles/CMakeTmp/src.cxx:6:10: note: suggested alternative:
> In file included from /home/xhh/Downloads/Trillion/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
> /usr/include/c++/5/cmath:641:5: note: ‘std::isnan’
> isnan(_Tp __x)
> ^
> CMakeFiles/cmTC_eb28e.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_eb28e.dir/src.cxx.o' failed
> make[1]: *** [CMakeFiles/cmTC_eb28e.dir/src.cxx.o] Error 1
> make[1]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/CMakeTmp'
> Makefile:126: recipe for target 'cmTC_eb28e/fast' failed
> make: *** [cmTC_eb28e/fast] Error 2
>
> Source file was:
>
> #include <cmath>
> int main()
> {
> double x = 1.0;
> isnan(x);
> return 0;
> }
>
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> Building CXX object CMakeFiles/cmTC_b0d34.dir/src.cxx.o
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> isinf(x);
> ^
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> In file included from /home/xhh/Downloads/Trillion/build/CMakeFiles/CMakeTmp/src.cxx:2:0:
> /usr/include/c++/5/cmath:621:5: note: ‘std::isinf’
> isinf(_Tp __x)
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> int main()
> {
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> isinf(x);
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> cd /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/share/cmake-3.5/Modules/FortranCInterface/Verify /usr/share/cmake-3.5/Modules/FortranCInterface/Verify /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles/VerifyFortran.dir/DependInfo.cmake
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/requires
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> make[2]: Nothing to be done for 'CMakeFiles/VerifyFortran.dir/requires'.
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/build
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> [ 16%] Linking Fortran static library libVerifyFortran.a
> /usr/bin/cmake -P CMakeFiles/VerifyFortran.dir/cmake_clean_target.cmake
> /usr/bin/cmake -E cmake_link_script CMakeFiles/VerifyFortran.dir/link.txt --verbose=1
> "" qc libVerifyFortran.a CMakeFiles/VerifyFortran.dir/VerifyFortran.f.o
> Error running link command: No such file or directory
> CMakeFiles/VerifyFortran.dir/build.make:97: recipe for target 'libVerifyFortran.a' failed
> make[2]: *** [libVerifyFortran.a] Error 2
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> CMakeFiles/Makefile2:107: recipe for target 'CMakeFiles/VerifyFortran.dir/all' failed
> make[1]: *** [CMakeFiles/VerifyFortran.dir/all] Error 2
> make[1]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> Makefile:86: recipe for target 'all' failed
> make: *** [all] Error 2
>
>
> Verifying Fortran/CXX Compiler Compatibility failed with the following output:
> Change Dir: /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX
>
> Run Build Command:"/usr/bin/make"
> /usr/bin/cmake -H/usr/share/cmake-3.5/Modules/FortranCInterface/Verify -B/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX --check-build-system CMakeFiles/Makefile.cmake 0
> /usr/bin/cmake -E cmake_progress_start /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles/progress.marks
> /usr/bin/make -f CMakeFiles/Makefile2 all
> make[1]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/depend
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> cd /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/share/cmake-3.5/Modules/FortranCInterface/Verify /usr/share/cmake-3.5/Modules/FortranCInterface/Verify /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles/VerifyFortran.dir/DependInfo.cmake
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/requires
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> make[2]: Nothing to be done for 'CMakeFiles/VerifyFortran.dir/requires'.
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/build
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> [ 16%] Linking Fortran static library libVerifyFortran.a
> /usr/bin/cmake -P CMakeFiles/VerifyFortran.dir/cmake_clean_target.cmake
> /usr/bin/cmake -E cmake_link_script CMakeFiles/VerifyFortran.dir/link.txt --verbose=1
> "" qc libVerifyFortran.a CMakeFiles/VerifyFortran.dir/VerifyFortran.f.o
> Error running link command: No such file or directory
> CMakeFiles/VerifyFortran.dir/build.make:97: recipe for target 'libVerifyFortran.a' failed
> make[2]: *** [libVerifyFortran.a] Error 2
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> CMakeFiles/Makefile2:107: recipe for target 'CMakeFiles/VerifyFortran.dir/all' failed
> make[1]: *** [CMakeFiles/VerifyFortran.dir/all] Error 2
> make[1]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> Makefile:86: recipe for target 'all' failed
> make: *** [all] Error 2
>
>
> Verifying Fortran/CXX Compiler Compatibility failed with the following output:
> Change Dir: /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX
>
> Run Build Command:"/usr/bin/make"
> /usr/bin/cmake -H/usr/share/cmake-3.5/Modules/FortranCInterface/Verify -B/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX --check-build-system CMakeFiles/Makefile.cmake 0
> /usr/bin/cmake -E cmake_progress_start /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles/progress.marks
> /usr/bin/make -f CMakeFiles/Makefile2 all
> make[1]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/depend
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> cd /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/share/cmake-3.5/Modules/FortranCInterface/Verify /usr/share/cmake-3.5/Modules/FortranCInterface/Verify /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles/VerifyFortran.dir/DependInfo.cmake
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/requires
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> make[2]: Nothing to be done for 'CMakeFiles/VerifyFortran.dir/requires'.
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/build
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> [ 16%] Linking Fortran static library libVerifyFortran.a
> /usr/bin/cmake -P CMakeFiles/VerifyFortran.dir/cmake_clean_target.cmake
> /usr/bin/cmake -E cmake_link_script CMakeFiles/VerifyFortran.dir/link.txt --verbose=1
> "" qc libVerifyFortran.a CMakeFiles/VerifyFortran.dir/VerifyFortran.f.o
> Error running link command: No such file or directory
> CMakeFiles/VerifyFortran.dir/build.make:97: recipe for target 'libVerifyFortran.a' failed
> make[2]: *** [libVerifyFortran.a] Error 2
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> CMakeFiles/Makefile2:107: recipe for target 'CMakeFiles/VerifyFortran.dir/all' failed
> make[1]: *** [CMakeFiles/VerifyFortran.dir/all] Error 2
> make[1]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> Makefile:86: recipe for target 'all' failed
> make: *** [all] Error 2
>
>
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