[Trilinos-Users] Problems of configure trilinos
Balakrishnan, Ramesh
bramesh at alcf.anl.gov
Mon Oct 1 00:56:55 EDT 2018
Which version of the gcc compiler is your MPI library built with? Also, why are you using trilinos version 11.6.2 and not the newer 12.x versions?
RB
> On Sep 28, 2018, at 5:29 PM, Haohui XIN <tjxinhaohui at gmail.com> wrote:
>
> Dear Staff,
>
> This is Haohui Xin. I am a Ph.D at Delft University and Technology. I am using trilinos for Peridigm. I could not configure it. Could you help me what is the problem for my configuration?
>
> I use following command to configure, but meet problems shown in bottom.
>
> ######################################################################
> configure command
> #####################################################################
> rm -f CMakeCache.txt
>
> cmake -D CMAKE_INSTALL_PREFIX:PATH=/usr/local/trilinos \
> -D CMAKE_AR="/usr/bin/ar" \
> -D MPI_BASE_DIR:PATH="/usr/local/openmpi/" \
> -D CMAKE_CXX_FLAGS:STRING="-O2 -std=c++11 -pedantic -ftrapv -Wall -Wno-long-long" \
> -D CMAKE_BUILD_TYPE:STRING=RELEASE \
> -D Trilinos_WARNINGS_AS_ERRORS_FLAGS:STRING="" \
> -D Trilinos_ENABLE_ALL_PACKAGES:BOOL=OFF \
> -D Trilinos_ENABLE_Teuchos:BOOL=ON \
> -D Trilinos_ENABLE_Shards:BOOL=ON \
> -D Trilinos_ENABLE_Sacado:BOOL=ON \
> -D Trilinos_ENABLE_Epetra:BOOL=ON \
> -D Trilinos_ENABLE_EpetraExt:BOOL=ON \
> -D Trilinos_ENABLE_Ifpack:BOOL=ON \
> -D Trilinos_ENABLE_AztecOO:BOOL=ON \
> -D Trilinos_ENABLE_Amesos:BOOL=ON \
> -D Trilinos_ENABLE_Anasazi:BOOL=ON \
> -D Trilinos_ENABLE_Belos:BOOL=ON \
> -D Trilinos_ENABLE_ML:BOOL=ON \
> -D Trilinos_ENABLE_Phalanx:BOOL=ON \
> -D Trilinos_ENABLE_Intrepid:BOOL=ON \
> -D Trilinos_ENABLE_NOX:BOOL=ON \
> -D Trilinos_ENABLE_Stratimikos:BOOL=ON \
> -D Trilinos_ENABLE_Thyra:BOOL=ON \
> -D Trilinos_ENABLE_Rythmos:BOOL=ON \
> -D Trilinos_ENABLE_MOOCHO:BOOL=ON \
> -D Trilinos_ENABLE_TriKota:BOOL=OFF \
> -D Trilinos_ENABLE_Stokhos:BOOL=ON \
> -D Trilinos_ENABLE_Zoltan:BOOL=ON \
> -D Trilinos_ENABLE_Piro:BOOL=ON \
> -D Trilinos_ENABLE_Teko:BOOL=ON \
> -D Trilinos_ENABLE_SEACASIoss:BOOL=ON \
> -D Trilinos_ENABLE_SEACAS:BOOL=ON \
> -D Trilinos_ENABLE_SEACASBlot:BOOL=ON \
> -D Trilinos_ENABLE_Pamgen:BOOL=ON \
> -D Trilinos_ENABLE_EXAMPLES:BOOL=OFF \
> -D Trilinos_ENABLE_TESTS:BOOL=ON \
> -D TPL_ENABLE_HDF5:BOOL=ON \
> -D HDF5_INCLUDE_DIRS:PATH="/usr/local/hdf5/include" \
> -D HDF5_LIBRARY_DIRS:PATH="/usr/local/hdf5/lib" \
> -D TPL_ENABLE_Netcdf:BOOL=ON \
> -D Netcdf_INCLUDE_DIRS:PATH=/usr/local/netcdf/include \
> -D Netcdf_LIBRARY_DIRS:PATH=/usr/local/netcdf/lib \
> -D TPL_ENABLE_MPI:BOOL=ON \
> -D TPL_ENABLE_BLAS:BOOL=ON \
> -D TPL_ENABLE_LAPACK:BOOL=ON \
> -D TPL_ENABLE_Boost:BOOL=ON \
> -D Boost_INCLUDE_DIRS:PATH=/usr/local/boost/include \
> -D Boost_LIBRARY_DIRS:PATH=/usr/local/boost/lib \
> -D CMAKE_VERBOSE_MAKEFILE:BOOL=OFF \
> -D Trilinos_VERBOSE_CONFIGURE:BOOL=OFF \
> /home/xhh/Downloads/Trillion/trilinos-11.6.2-Source
>
> #################################################################
> errors
> #################################################################
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> /usr/bin/cmake -E cmake_link_script CMakeFiles/VerifyFortran.dir/link.txt --verbose=1
> "" qc libVerifyFortran.a CMakeFiles/VerifyFortran.dir/VerifyFortran.f.o
> Error running link command: No such file or directory
> CMakeFiles/VerifyFortran.dir/build.make:97: recipe for target 'libVerifyFortran.a' failed
> make[2]: *** [libVerifyFortran.a] Error 2
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> CMakeFiles/Makefile2:107: recipe for target 'CMakeFiles/VerifyFortran.dir/all' failed
> make[1]: *** [CMakeFiles/VerifyFortran.dir/all] Error 2
> make[1]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> Makefile:86: recipe for target 'all' failed
> make: *** [all] Error 2
>
>
> Verifying Fortran/CXX Compiler Compatibility failed with the following output:
> Change Dir: /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX
>
> Run Build Command:"/usr/bin/make"
> /usr/bin/cmake -H/usr/share/cmake-3.5/Modules/FortranCInterface/Verify -B/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX --check-build-system CMakeFiles/Makefile.cmake 0
> /usr/bin/cmake -E cmake_progress_start /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles/progress.marks
> /usr/bin/make -f CMakeFiles/Makefile2 all
> make[1]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/depend
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> cd /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/share/cmake-3.5/Modules/FortranCInterface/Verify /usr/share/cmake-3.5/Modules/FortranCInterface/Verify /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles/VerifyFortran.dir/DependInfo.cmake
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/requires
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> make[2]: Nothing to be done for 'CMakeFiles/VerifyFortran.dir/requires'.
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/build
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> [ 16%] Linking Fortran static library libVerifyFortran.a
> /usr/bin/cmake -P CMakeFiles/VerifyFortran.dir/cmake_clean_target.cmake
> /usr/bin/cmake -E cmake_link_script CMakeFiles/VerifyFortran.dir/link.txt --verbose=1
> "" qc libVerifyFortran.a CMakeFiles/VerifyFortran.dir/VerifyFortran.f.o
> Error running link command: No such file or directory
> CMakeFiles/VerifyFortran.dir/build.make:97: recipe for target 'libVerifyFortran.a' failed
> make[2]: *** [libVerifyFortran.a] Error 2
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> CMakeFiles/Makefile2:107: recipe for target 'CMakeFiles/VerifyFortran.dir/all' failed
> make[1]: *** [CMakeFiles/VerifyFortran.dir/all] Error 2
> make[1]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> Makefile:86: recipe for target 'all' failed
> make: *** [all] Error 2
>
>
> Verifying Fortran/CXX Compiler Compatibility failed with the following output:
> Change Dir: /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX
>
> Run Build Command:"/usr/bin/make"
> /usr/bin/cmake -H/usr/share/cmake-3.5/Modules/FortranCInterface/Verify -B/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX --check-build-system CMakeFiles/Makefile.cmake 0
> /usr/bin/cmake -E cmake_progress_start /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles/progress.marks
> /usr/bin/make -f CMakeFiles/Makefile2 all
> make[1]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/depend
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> cd /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/share/cmake-3.5/Modules/FortranCInterface/Verify /usr/share/cmake-3.5/Modules/FortranCInterface/Verify /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles/VerifyFortran.dir/DependInfo.cmake
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/requires
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> make[2]: Nothing to be done for 'CMakeFiles/VerifyFortran.dir/requires'.
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/build
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> [ 16%] Linking Fortran static library libVerifyFortran.a
> /usr/bin/cmake -P CMakeFiles/VerifyFortran.dir/cmake_clean_target.cmake
> /usr/bin/cmake -E cmake_link_script CMakeFiles/VerifyFortran.dir/link.txt --verbose=1
> "" qc libVerifyFortran.a CMakeFiles/VerifyFortran.dir/VerifyFortran.f.o
> Error running link command: No such file or directory
> CMakeFiles/VerifyFortran.dir/build.make:97: recipe for target 'libVerifyFortran.a' failed
> make[2]: *** [libVerifyFortran.a] Error 2
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> CMakeFiles/Makefile2:107: recipe for target 'CMakeFiles/VerifyFortran.dir/all' failed
> make[1]: *** [CMakeFiles/VerifyFortran.dir/all] Error 2
> make[1]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> Makefile:86: recipe for target 'all' failed
> make: *** [all] Error 2
>
>
> Verifying Fortran/CXX Compiler Compatibility failed with the following output:
> Change Dir: /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX
>
> Run Build Command:"/usr/bin/make"
> /usr/bin/cmake -H/usr/share/cmake-3.5/Modules/FortranCInterface/Verify -B/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX --check-build-system CMakeFiles/Makefile.cmake 0
> /usr/bin/cmake -E cmake_progress_start /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles/progress.marks
> /usr/bin/make -f CMakeFiles/Makefile2 all
> make[1]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/depend
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> cd /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/share/cmake-3.5/Modules/FortranCInterface/Verify /usr/share/cmake-3.5/Modules/FortranCInterface/Verify /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles/VerifyFortran.dir/DependInfo.cmake
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/requires
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> make[2]: Nothing to be done for 'CMakeFiles/VerifyFortran.dir/requires'.
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/build
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> [ 16%] Linking Fortran static library libVerifyFortran.a
> /usr/bin/cmake -P CMakeFiles/VerifyFortran.dir/cmake_clean_target.cmake
> /usr/bin/cmake -E cmake_link_script CMakeFiles/VerifyFortran.dir/link.txt --verbose=1
> "" qc libVerifyFortran.a CMakeFiles/VerifyFortran.dir/VerifyFortran.f.o
> Error running link command: No such file or directory
> CMakeFiles/VerifyFortran.dir/build.make:97: recipe for target 'libVerifyFortran.a' failed
> make[2]: *** [libVerifyFortran.a] Error 2
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> CMakeFiles/Makefile2:107: recipe for target 'CMakeFiles/VerifyFortran.dir/all' failed
> make[1]: *** [CMakeFiles/VerifyFortran.dir/all] Error 2
> make[1]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> Makefile:86: recipe for target 'all' failed
> make: *** [all] Error 2
>
>
> Verifying Fortran/CXX Compiler Compatibility failed with the following output:
> Change Dir: /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX
>
> Run Build Command:"/usr/bin/make"
> /usr/bin/cmake -H/usr/share/cmake-3.5/Modules/FortranCInterface/Verify -B/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX --check-build-system CMakeFiles/Makefile.cmake 0
> /usr/bin/cmake -E cmake_progress_start /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles/progress.marks
> /usr/bin/make -f CMakeFiles/Makefile2 all
> make[1]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/depend
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> cd /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/share/cmake-3.5/Modules/FortranCInterface/Verify /usr/share/cmake-3.5/Modules/FortranCInterface/Verify /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX /home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles/VerifyFortran.dir/DependInfo.cmake
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/requires
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> make[2]: Nothing to be done for 'CMakeFiles/VerifyFortran.dir/requires'.
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> /usr/bin/make -f CMakeFiles/VerifyFortran.dir/build.make CMakeFiles/VerifyFortran.dir/build
> make[2]: Entering directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> [ 16%] Linking Fortran static library libVerifyFortran.a
> /usr/bin/cmake -P CMakeFiles/VerifyFortran.dir/cmake_clean_target.cmake
> /usr/bin/cmake -E cmake_link_script CMakeFiles/VerifyFortran.dir/link.txt --verbose=1
> "" qc libVerifyFortran.a CMakeFiles/VerifyFortran.dir/VerifyFortran.f.o
> Error running link command: No such file or directory
> CMakeFiles/VerifyFortran.dir/build.make:97: recipe for target 'libVerifyFortran.a' failed
> make[2]: *** [libVerifyFortran.a] Error 2
> make[2]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> CMakeFiles/Makefile2:107: recipe for target 'CMakeFiles/VerifyFortran.dir/all' failed
> make[1]: *** [CMakeFiles/VerifyFortran.dir/all] Error 2
> make[1]: Leaving directory '/home/xhh/Downloads/Trillion/build/CMakeFiles/FortranCInterface/VerifyCXX'
> Makefile:86: recipe for target 'all' failed
> make: *** [all] Error 2
>
>
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