[Trilinos-Users] [EXTERNAL] make_install_error
Eligiusz Postek
ewpostek at googlemail.com
Wed Oct 18 17:59:26 EDT 2017
Hi,
I introduced your suggestions.
However, I obtain an error
while building Peridigm,
I attached the options to build Trilinos,
there is the error (log Cmake) and the
options for Peridigm,
Could you help ?
Elek
The error (cmake log):
gmake[1]: Leaving directory
`/lustre/tetyda/home/ewpostek/peri14a/build/CMakeFiles/CMakeTmp'
File /home/ewpostek/peri14a/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c:
/* */
#include <pthread.h>
int main(int argc, char** argv)
{
(void)argv;
#ifndef pthread_create
return ((int*)(&pthread_create))[argc];
#else
(void)argc;
return 0;
#endif
}
The Peridigm options:
/home/ewpostek/cmm/cmake-3.9.4-Linux-x86_64/bin/cmake \
-DCMAKE_BUILD_TYPE:STRING=Release \
-DTrilinos_DIR:PATH="/lustre/tetyda/home/ewpostek/Tri2/insta/include" \
-DCMAKE_C_COMPILER:STRING=cc \
-DCMAKE_CXX_COMPILER:STRING=CC \
-DBOOST_ROOT:PATH=/apps/boost/1.60.0/GNU/5.3 \
-DBoost_DIR:PATH=/apps/boost/1.60.0/GNU/5.3 \
-DCMAKE_CXX_FLAGS:STRING="-O2 -Wall -pedantic -std=c++11 -Wno-long-long
-ftrapv -Wno-deprecated" \
-DCMAKE_INSTALL_PREFIX:PATH=/home/ewpostek/peri1a/insta \
/home/ewpostek/peri14a/peridigm-master
On Wed, Oct 18, 2017 at 6:58 PM, Eligiusz Postek <ewpostek at googlemail.com>
wrote:
> Hello,
> these are my settings that produce the error, below.
> I am introducing the suggestions, now.
>
> /home/ewpostek/cmm/cmake-3.9.4-Linux-x86_64/bin/cmake \
> -D CMAKE_INSTALL_PREFIX:PATH=/home/ewpostek/Trilinos/insta \
> -D CMAKE_CXX_FLAGS:STRING="-O2 -ansi -pedantic -ftrapv -Wall
> -Wno-long-long" \
> -D CMAKE_BUILD_TYPE:STRING=RELEASE \
> -D CMAKE_Fortran_FLAGS_RELEASE:STRING=-O3 \
> -D Trilinos_WARNINGS_AS_ERRORS_FLAGS:STRING="" \
> -D Trilinos_ENABLE_ALL_PACKAGES:BOOL=OFF \
> -D Trilinos_ENABLE_Teuchos:BOOL=ON \
> -D Trilinos_ENABLE_Shards:BOOL=ON \
> -D Trilinos_ENABLE_Sacado:BOOL=ON \
> -D Trilinos_ENABLE_Epetra:BOOL=ON \
> -D Trilinos_ENABLE_EpetraExt:BOOL=ON \
> -D Trilinos_ENABLE_Ifpack:BOOL=ON \
> -D Trilinos_ENABLE_AztecOO:BOOL=ON \
> -D Trilinos_ENABLE_Amesos:BOOL=ON \
> -D Trilinos_ENABLE_Anasazi:BOOL=ON \
> -D Trilinos_ENABLE_Belos:BOOL=ON \
> -D Trilinos_ENABLE_ML:BOOL=ON \
> -D Trilinos_ENABLE_Phalanx:BOOL=ON \
> -D Trilinos_ENABLE_Intrepid:BOOL=ON \
> -D Trilinos_ENABLE_NOX:BOOL=ON \
> -D Trilinos_ENABLE_Stratimikos:BOOL=ON \
> -D Trilinos_ENABLE_Thyra:BOOL=ON \
> -D Trilinos_ENABLE_Rythmos:BOOL=ON \
> -D Trilinos_ENABLE_MOOCHO:BOOL=ON \
> -D Trilinos_ENABLE_TriKota:BOOL=OFF \
> -D Trilinos_ENABLE_Stokhos:BOOL=ON \
> -D Trilinos_ENABLE_Zoltan:BOOL=ON \
> -D Trilinos_ENABLE_Piro:BOOL=ON \
> -D Trilinos_ENABLE_Teko:BOOL=ON \
> -D Trilinos_ENABLE_SEACASIoss:BOOL=ON \
> -D Trilinos_ENABLE_SEACAS:BOOL=OFF \
> -D Trilinos_ENABLE_SEACASBlot:BOOL=ON \
> -D Trilinos_ENABLE_Pamgen:BOOL=ON \
> -D Trilinos_ENABLE_EXAMPLES:BOOL=OFF \
> -D Trilinos_ENABLE_TESTS:BOOL=ON \
> -D TPL_ENABLE_Matio=OFF \
> -D TPL_ENABLE_HDF5:BOOL=OFF \
> -D TPL_ENABLE_Netcdf:BOOL=OFF \
> -D TPL_ENABLE_MPI:BOOL=ON \
> -D TPL_ENABLE_BLAS:BOOL=ON \
> -D TPL_ENABLE_LAPACK:BOOL=ON \
> -D TPL_ENABLE_Boost:BOOL=ON \
> -D Boost_INCLUDE_DIRS:PATH="/opt/apps/boost/1.60.0/GNU/5.3/include" \
> -D BoostLib_LIBRARY_DIRS="/opt/apps/boost/1.60.0/GNU/5.3/lib" \
> -D CMAKE_VERBOSE_MAKEFILE:BOOL=OFF \
> -D CMAKE_EXE_LINKER_FLAGS=" " \
> -D MPI_BASE_DIR:FILEPATH="/opt/cray/mpt/7.3.2/gni/mpich-gnu/5.1" \
> -D Trilinos_VERBOSE_CONFIGURE:BOOL=OFF \
> -D MPI_C_COMPILER:FILEPATH=cc \
> -D MPI_CXX_COMPILER:FILEPATH=CC \
> -D MPI_Fortran_COMPILER:FILEPATH=ftn \
> -D TPL_HDF5_LIBRARIES=/opt/cray/hdf5/1.8.16/GNU/5.1/lib \
> -D BLAS_LIBRARY_DIRS:PATH=/home/ewpostek/lapack_build/lib_stat \
> -D LAPACK_LIBRARY_DIRS:PATH=/home/ewpostek/lapack_build/lib_stat \
> -D HDF5_INCLUDE_DIRS=/opt/cray/hdf5/1.8.16/GNU/5.1/include \
> -D TPL_Netcdf_LIBRARIES=/opt/cray/netcdf/4.4.0/GNU/5.1 \
> /home/ewpostek/Tri2/trilinos-12.12.1-Source
>
>
> On Wed, Oct 18, 2017 at 5:11 PM, Elliott, James John <jjellio at sandia.gov>
> wrote:
>
>> It looks like it is trying to set RPATH on a statically linked executable.
>>
>> On Cray machines,
>> I use:
>> -D Trilinos_LINK_SEARCH_START_STATIC:BOOL=ON
>> -D BUILD_SHARED_LIBS:BOOL=OFF
>> -D Trilinos_SET_INSTALL_RPATH=OFF
>>
>> # This is unrelated, but I need it on Cray to get CXX demangling correct.
>> -D HAVE_GCC_ABI_DEMANGLE:BOOL=TRUE
>>
>>
>> # always set the compilers
>>
>> -D MPI_USE_COMPILER_WRAPPERS=OFF
>> -D CMAKE_CXX_COMPILER="CC"
>> -D CMAKE_C_COMPILER="cc"
>> -D CMAKE_Fortran_COMPILER="ftn"
>>
>>
>> The above settings tell CMake to prefer static libs over shared.
>> Turns off shared lib generation by Trilinos
>> Disables the setting of the runtime path for executables, which is
>> unneeded since they are statically linked.
>>
>> James
>>
>>
>> ------------------------------
>> *From:* Trilinos-Users <trilinos-users-bounces at trilinos.org> on behalf
>> of Bartlett, Roscoe A <rabartl at sandia.gov>
>> *Sent:* Wednesday, October 18, 2017 7:20 AM
>> *To:* Eligiusz Postek; trilinos-users at trilinos.org
>> *Subject:* Re: [Trilinos-Users] [EXTERNAL] make_install_error
>>
>>
>> What are the full set of options you are passing to cmake?
>>
>>
>>
>> -Ross
>>
>>
>>
>> *From:* Trilinos-Users [mailto:trilinos-users-bounces at trilinos.org] *On
>> Behalf Of *Eligiusz Postek
>> *Sent:* Sunday, October 15, 2017 2:44 AM
>> *To:* trilinos-users at trilinos.org
>> *Subject:* [EXTERNAL] [Trilinos-Users] make_install_error
>>
>>
>>
>> Dear Colleagues,
>>
>> I get the error during installation
>>
>> This is the source : trilinos-12.12.1-Source
>>
>> This is cmake: /home/ewpostek/cmm/cmake-3.9.4-Linux-x86_64/bin/cmake
>>
>> This is the environment:
>>
>>
>>
>> module load PrgEnv-gnu/5.2.82 (gnu cray xc30)
>>
>> module load cray-mpich/7.3.2
>>
>>
>>
>> make install
>>
>>
>>
>> -- Installing: /home/ewpostek/Tri2/insta/include/Epetra_MpiDistributor.h
>> -- Installing: /home/ewpostek/Tri2/insta/bin/
>> Epetra_BasicPerfTest_test.exe
>> CMake Error at packages/epetra/test/BasicPerfTest/cmake_install.cmake:45
>> (file):
>> file RPATH_CHANGE could not write new RPATH:
>>
>> /home/ewpostek/Tri2/insta/lib
>>
>> to the file:
>>
>> /home/ewpostek/Tri2/insta/bin/Epetra_BasicPerfTest_test.exe
>>
>> No valid ELF RPATH or RUNPATH entry exists in the file;
>> Call Stack (most recent call first):
>> packages/epetra/test/cmake_install.cmake:39 (include)
>> packages/epetra/cmake_install.cmake:65 (include)
>> cmake_install.cmake:72 (include)
>>
>>
>> make: *** [install] Error 1
>> okeanos1 Tri2/build>
>>
>>
>>
>>
>>
>> Could you be so kind to give a hint?
>>
>>
>>
>> Best regards,
>>
>> Elek
>>
>>
>>
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://trilinos.org/pipermail/trilinos-users/attachments/20171018/93bf30ea/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: xx.odt
Type: application/vnd.oasis.opendocument.text
Size: 28100 bytes
Desc: not available
URL: <https://trilinos.org/pipermail/trilinos-users/attachments/20171018/93bf30ea/attachment-0001.odt>
More information about the Trilinos-Users
mailing list