[Trilinos-Users] linking error installing trilinos with amesos with mumps

[Lailai Zhu]

hi, dear all,

i have tried to install a trilinos version with amesos with mumps,
i tried several versions of trilinos. the errors seem to be intriguing,
mumps is installed and tested. amesos installation also passed its own the
tests. the errors come from the other packages MueLu that depends on 
amesos,
here is the error, do you guys have any ideas, thanks in advance.

[ 99%] Linking CXX executable MueLu_CreateOperator.exe

../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`METIS_WPartGraphKway2'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to `mpi_pack_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_iprobe_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_op_free_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_initialized_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_alltoall_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`METIS_WPartGraphKway'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_reduce_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_unpack_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_gatherv_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to `mpi_wtime_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_allreduce_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`metis_nodewnd_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_get_count_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_pack_size_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to `mpi_irecv_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`METIS_NodeND'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_comm_split_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to `mpi_abort_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`METIS_mCPartGraphRecursive2'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_gather_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_comm_rank_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`blacs_pinfo_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to `mpi_probe_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_cancel_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_allgatherv_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`Cblacs_pinfo'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`METIS_NodeComputeSeparator'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to `mpi_ssend_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to `mpi_wait_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_comm_size_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to `mpi_send_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_barrier_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_comm_dup_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to `mpi_test_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_comm_free_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`metis_nodend_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_request_free_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`METIS_EdgeComputeSeparator'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to `mpi_isend_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to `mpi_recv_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to `mpi_bcast_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_waitany_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_reduce_scatter_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_get_processor_name_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_op_create_'
../../../amesos/src/libamesos.so.12.0.1: undefined reference to 
`mpi_waitall_'
collect2: error: ld returned 1 exit status

here is part of the config file,

    cmake                                            \
     -DTrilinos_ENABLE_MueLu=ON                       \
-DParMETIS_INCLUDE_DIRS:FILEPATH=/home/user/nonroot/parmetis/3.1-gnu-openmpi 
\
-DParMETIS_LIBRARY_DIRS:FILEPATH=/home/user/nonroot/parmetis/3.1-gnu-openmpi 
\
     -DParMETIS_LIBRARY_NAMES:STRING="libparmetis.a libmetis.a" \
     -DTPL_ENABLE_BLACS:BOOL=ON \
-DBLACS_INCLUDE_DIRS:FILEPATH=/home/user/nonroot/BLACS-GNU4/SRC/MPI/INTERNAL\
     -DBLACS_LIBRARY_DIRS:FILEPATH=/home/user/nonroot/BLACS-GNU4/LIB \
     -DBLACS_LIBRARY_NAMES:STRING="blacs_MPI-LINUX-0.a 
blacsCinit_MPI-LINUX-0.a blacsF77init_MPI-LINUX-0.a blacs_MPI-LINUX-0.a 
blacsCinit_MPI-LINUX-0.a" \
     -DTPL_ENABLE_SCALAPACK:BOOL=ON \
-DSCALAPACK_INCLUDE_DIRS:FILEPATH=/home/user/nonroot/ScaLAPACK/1.8.0-gnu-openmpi/SRC 
\
-DTPL_SCALAPACK_LIBRARIES=/home/user/nonroot/ScaLAPACK/1.8.0-gnu-openmpi/libscalapack.a 
${BLACS_LIB}/blacs_MPI-LINUX-0.a ${BLACS_LIB}/blacsCinit_MPI-LINUX-0.a 
${BLACS_LIB}/blacsF77init_MPI-LINUX-0.a ${BLACS_LIB}/blacs_MPI-LINUX-0.a 
${BLACS_LIB}/blacsCinit_MPI-LINUX-0.a \
     -DTrilinos_ENABLE_Amesos=ON          \
     -DAmesos_ENABLE_ParMETIS:BOOL=ON \
     -DAmesos_ENABLE_BLACS:BOOL=ON \
     -DAmesos_ENABLE_SCALAPACK:BOOL=ON \
     -DAmesos_ENABLE_MUMPS:BOOL=ON \
-DAmesos_CXX_FLAGS="-L/home/user/nonroot/mpi/openmpi/2.0.1-gnu/lib -lmpi 
-lmpi_mpifh -L/home/user/nonroot/parmetis/3.1-gnu-openmpi -lparmetis 
-lmetis -L/home/user/nonroot/BLACS-GNU4/LIB -lblacs -lblacsCinit 
-lblacsF77init -lblacs -lblacsCinit"\
-DTrilinos_EXTRA_LINK_FLAGS="-L/home/user/nonroot/mpi/openmpi/2.0.1-gnu/lib 
-lmpi -lmpi_mpifh -L/home/user/nonroot/parmetis/3.1-gnu-openmpi 
-lparmetis -lmetis -L/home/user/nonroot/BLACS-GNU4/LIB -lblacs 
-lblacsCinit -lblacsF77init -lblacs -lblacsCinit" \
-DMUMPS_INCLUDE_DIRS:FILEPATH="/home/user/nonroot/mumps/MUMPS_4.9-gnu-openmpi/include" 
\
-DMUMPS_LIBRARY_DIRS:FILEPATH="/home/user/nonroot/mumps/MUMPS_4.9-gnu-openmpi/lib" 
\
     -DMUMPS_LIBRARY_NAMES:STRING="dmumps;mumps_common;pord" \
     -DTrilinos_ENABLE_Epetra=ON                      \
     -DTrilinos_ENABLE_Ifpack=ON                      \
     -DIfpack_ENABLE_Amesos=OFF                       \
     -DTrilinos_ENABLE_AztecOO=ON                     \
     -DTrilinos_ENABLE_Sacado=ON                      \
     -DTrilinos_ENABLE_Teuchos=ON                     \
     -DTrilinos_ENABLE_ML=ON                          \
     -DML_ENABLE_Amesos=OFF                       \
     -DTrilinos_ENABLE_TESTS=ON                       \
     -DTrilinos_VERBOSE_CONFIGURE=ON                 \
     -DTPL_ENABLE_MPI=ON                              \
     -DMPI_BASE_DIR=/home/user/nonroot/mpi/openmpi/2.0.1-gnu \
     -DBUILD_SHARED_LIBS=ON                           \
     -DCMAKE_VERBOSE_MAKEFILE=OFF                     \
     -DCMAKE_BUILD_TYPE=RELEASE                       \
     -DTrilinos_ENABLE_EXPLICIT_INSTANTIATION=ON      \
-DTPL_BLAS_LIBRARIES=/home/user/nonroot/OpenBlas/0.2.19-gnu/lib/libopenblas.so 
\
-DTPL_LAPACK_LIBRARIES=/home/user/nonroot/OpenBlas/0.2.19-gnu/lib/libopenblas.so 
\
-DCMAKE_INSTALL_PREFIX=/home/user/nonroot/trilinos/12.0.1-openmpi-gnu \
     /home/user/Downloads/trilinos-12.0.1-Source



best,
lailai