[Trilinos-Users] [EXTERNAL] Intel compilers
Bradley, Andrew Michael
ambradl at sandia.gov
Mon May 30 15:39:04 EDT 2016
Hi Andrea,
I have a guess based on the error output you provided. You indicate that you're using Intel compilers. This line:
"/usr/include/c++/4.3/bits/stl_vector.h"
suggests the gcc headers that icpc is using is v4.3, which does not support C++11. C++11 is required by Trilinos now.
To confirm this, type
icpc -v
and check what the gcc compatibility is. For example, on a particular computer, I see
$ icpc -v
icpc version 16.0.1 (gcc version 4.7.2 compatibility)
If my guess is right, you'll see something like
$ icpc -v
icpc version 16.0.1 (gcc version 4.3 compatibility)
The gcc version has to be >= 4.7.2.
If this is indeed the problem and you're on a system with multiple gcc versions, do something like
$ module clear
$ module load intel/compilers/16.01 gcc/4.7.2
This is obviously very system dependent. If you're not on a system like that, you'll have to check with the sys admin to see what to do.
Cheers,
Andrew
________________________________________
From: Trilinos-Users <trilinos-users-bounces at trilinos.org> on behalf of Villa Andrea (RSE) <Andrea.Villa at rse-web.it>
Sent: Monday, May 30, 2016 7:01 AM
To: trilinos-users at trilinos.org
Subject: [EXTERNAL] [Trilinos-Users] Intel compilers
Dear Trilinos developers I'm currently experiencing some problems compiling the version 12 of Trilinos with Intel compilers. I have used the same script for versions: 11.10.2 and 12.4.2. The script is attached below. I have used, in both cases, the Intel compiler included in the parallel studio 2016. The same script fails only with the second version (12.4.2).
The error is:
Scanning dependencies of target last_lib
[ 0%] Building C object CMakeFiles/last_lib.dir/last_lib_dummy.c.o
Linking C static library liblast_lib.a
xiar: executing 'ar'
[ 0%] Built target last_lib
Scanning dependencies of target gtest
[ 0%] Building CXX object commonTools/gtest/CMakeFiles/gtest.dir/gtest/gtest-all.cc.o
/usr/include/c++/4.3/ext/new_allocator.h(114): error: a value of type "long" cannot be used to initialize an entity of type "char *"
{ ::new((void *)__p) _Tp(std::forward<_Args>(__args)...); }
^
detected during:
instantiation of "void __gnu_cxx::new_allocator<_Tp>::construct(__gnu_cxx::new_allocator<_Tp>::pointer, _Args &&...) [with _Tp=char *, _Args=<long>]" at line 704 of "/usr/include/c++/4.3/bits/stl_vector.h"
instantiation of "void std::vector<_Tp, _Alloc>::push_back(_Args &&...) [with _Tp=char *, _Alloc=std::allocator<char *>, _Args=<long>]" at line 7384 of "/home/TTD/trilinos-12.6.3-Source/commonTools/gtest/gtest/gtest-all.cc"
compilation aborted for /home/TTD/trilinos-12.6.3-Source/commonTools/gtest/gtest/gtest-all.cc (code 2)
make[2]: *** [commonTools/gtest/CMakeFiles/gtest.dir/gtest/gtest-all.cc.o] Error 2
make[1]: *** [commonTools/gtest/CMakeFiles/gtest.dir/all] Error 2
make: *** [all] Error 2
Do you have any hint to develop a work around?
I can provide more data or tests if needed.
Thank you very much,
Andrea Villa.
Script Used---------------------------------------------------------------------------------------------
EXTRA_ARGS=$@
/home/TTD/gnuCmake/bin/cmake \
-D CMAKE_BUILD_TYPE:STRING=RELEASE \
-D CMAKE_CXX_FLAGS:STRING="-DBOOST_SP_DISABLE_THREADS" \
-D CMAKE_INSTALL_PREFIX:PATH=/home/TTD/intelTrilinos-12.4.2 \
-D CMAKE_C_FLAGS:STRING="-DMPICH_IGNORE_CXX_SEEK" \
-D CMAKE_CXX_FLAGS:STRING="-DMPICH_IGNORE_CXX_SEEK" \
-D CMAKE_LINKER:FILEPATH=/opt/intel/ParallelStudio_XE_2016/bin/xild \
-D CMAKE_AR:FILEPATH=/opt/intel/ParallelStudio_XE_2016/bin/xiar \
-D MEMORYCHECK_COMMAND:FILEPATH=/usr/bin \
-D DART_TESTING_TIMEOUT:STRING=600 \
-D TPL_ENABLE_Boost:BOOL=OFF \
-D TPL_ENABLE_MPI:BOOL=ON \
-D TPL_ENABLE_HDF5:BOOL=ON \
-D TPL_ENABLE_Netcdf:BOOL=OFF \
-D TPL_ENABLE_Matio=OFF \
-D BUILD_SHARED_LIBS:BOOL=OFF \
-D BLAS_INCLUDE_DIRS:PATH=/opt/intel/ParallelStudio_XE_2016/mkl/include/ \
-D BLAS_LIBRARY_DIRS:PATH=/opt/intel/ParallelStudio_XE_2016/mkl/lib/intel64/ \
-D BLAS_LIBRARY_NAMES:STRING="mkl_intel_lp64; mkl_sequential; mkl_core" \
-D LAPACK_INCLUDE_DIRS:PATH=/opt/intel/ParallelStudio_XE_2016/mkl/include/ \
-D LAPACK_LIBRARY_DIRS:PATH=/opt/intel/ParallelStudio_XE_2016/mkl/lib/intel64/ \
-D LAPACK_LIBRARY_NAMES:STRING="mkl_intel_lp64" \
-D MPI_C_COMPILER:FILEPATH="/opt/intel/ParallelStudio_XE_2016/impi/5.1.3.181/bin64/mpiicc" \
-D MPI_CXX_COMPILER:FILEPATH="/opt/intel/ParallelStudio_XE_2016/impi/5.1.3.181/bin64/mpiicpc" \
-D MPI_Fortan_COMPILER:FILEPATH="/opt/intel/ParallelStudio_XE_2016/impi/5.1.3.181/bin64/mpiifort" \
-D MPI_EXEC:FILEPATH=/opt/intel/ParallelStudio_XE_2016/impi/5.1.3.181/bin64/mpirun \
-D Trilinos_EXTRA_LINK_FLAGS:STRING="-Wl,-rpath,/opt/intel/ParallelStudio_XE_2016/mkl/intel64/ -Wl,-rpath,/opt/intel/ParallelStudio_XE_2016/impi/5.1.3.181/bin64" \
-D HDF5_INCLUDE_DIRS:PATH=/home/TTD/intelHdf5-1.8.17/include \
-D HDF5_LIBRARY_DIRS:PATH=/home/TTD/intelHdf5-1.8.17/lib \
-D Trilinos_ENABLE_ALL_PACKAGES:BOOL=ON \
-D Trilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON \
-D Trilinos_ENABLE_Zoltan:BOOL=ON \
-D Trilinos_ENABLE_SEACAS:BOOL=OFF \
-D Trilinos_ENABLE_TESTS:BOOL=OFF \
$EXTRA_ARGS \
..
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