[Trilinos-Users] MueLU example - compilation
Jonathan Hu
jhu at sandia.gov
Fri May 27 17:18:50 EDT 2016
Martin,
It appears that you are trying to link an example copied from MueLu
against a prebuilt Trilinos that doesn't have support for
std::complex<double> enabled. Did you build Trilinos with explicit
template instantiation (ETI) on or off, and did you enable complex
support in Trilinos? Posting your cmake configure script and
CMakeLists.txt (from the build directory) for Trilinos should answer
both questions.
Regards,
Jonathan Hu
Martin Vymazal wrote on 05/27/2016 09:06 AM:
> Hello Jonathan,
>
> I did what you suggested. The output shows that libmuelu.so is
> listed among libraries for linking, so I don't know what's wrong ...
> Since the linker complained about missing references to
> Muelu::Hierarchy< ... > with std::complex<double> as Scalar type, I
> tried to typedef Scalar as plain double instead. Unfortunately, that
> does not fix the problem. In addition, the example in
> MueLu_MemoryProfiler.cpp (instead of Simple-Complex.cpp) compiles and
> links fine.
>
> I should have also mentioned that I compiled Trilinos with support
> for Muelu, Belos, Tpetra, Xpetra, Ifpack2, Amesos and Amesos2 and some
> more packages. Support for C++11 and explicit template instantiation
> is also on.
>
> Best regards,
>
> Martin
>
>
> /usr/bin/cmake -H/home/martin/work/code_test/muelu/amg_solver
> -B/home/martin/work/code_test/muelu/amg_solver/build
> --check-build-system CMakeFiles/Makefile.cmake 0
> /usr/bin/cmake -E cmake_progress_start
> /home/martin/work/code_test/muelu/amg_solver/build/CMakeFiles
> /home/martin/work/code_test/muelu/amg_solver/build/CMakeFiles/progress.marks
> make -f CMakeFiles/Makefile2 all
> make[1]: Entering directory
> '/home/martin/work/code_test/muelu/amg_solver/build'
> make -f CMakeFiles/muelu_test.dir/build.make
> CMakeFiles/muelu_test.dir/depend
> make[2]: Entering directory
> '/home/martin/work/code_test/muelu/amg_solver/build'
> cd /home/martin/work/code_test/muelu/amg_solver/build &&
> /usr/bin/cmake -E cmake_depends "Unix Makefiles"
> /home/martin/work/code_test/muelu/amg_solver
> /home/martin/work/code_test/muelu/amg_solver
> /home/martin/work/code_test/muelu/amg_solver/build
> /home/martin/work/code_test/muelu/amg_solver/build
> /home/martin/work/code_test/muelu/amg_solver/build/CMakeFiles/muelu_test.dir/DependInfo.cmake
> --color=
> make[2]: Leaving directory
> '/home/martin/work/code_test/muelu/amg_solver/build'
> make -f CMakeFiles/muelu_test.dir/build.make
> CMakeFiles/muelu_test.dir/build
> make[2]: Entering directory
> '/home/martin/work/code_test/muelu/amg_solver/build'
> [ 50%] Linking CXX executable muelu_test
> /usr/bin/cmake -E cmake_link_script CMakeFiles/muelu_test.dir/link.txt
> --verbose=1
> /usr/bin/c++ CMakeFiles/muelu_test.dir/src/Simple-Complex.cpp.o -o
> muelu_test -L/home/martin/local/gcc/trilinos-12.6.3/lib -rdynamic
> /home/martin/local/gcc/trilinos-12.6.3/lib/librythmos.so.12.6.3
> /home/martin/local/gcc/trilinos-12.6.3/lib/libmuelu-adapters.so.12.6.3
> /home/martin/local/gcc/trilinos-12.6.3/lib/libmuelu-interface.so.12.6.3
> /home/martin/local/gcc/trilinos-12.6.3/lib/libmuelu.so.12.6.3
> /home/martin/local/gcc/trilinos-12.6.3/lib/liblocathyra.so.12.6.3
> /home/martin/local/gcc/trilinos-12.6.3/lib/liblocaepetra.so.12.6.3
> /home/martin/local/gcc/trilinos-12.6.3/lib/liblocalapack.so.12.6.3
> /home/martin/local/gcc/trilinos-12.6.3/lib/libloca.so.12.6.3
> /home/martin/local/gcc/trilinos-12.6.3/lib/libnoxepetra.so.12.6.3
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> /home/martin/local/gcc/SuperLU/lib/libsuperlu.so.4
> /home/martin/local/gcc/hdf5-1.8.16/lib/libhdf5.so -lz -lz
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> /home/martin/local/gcc/suitesparse/lib/libamd.a
> /home/martin/local/gcc/suitesparse/lib/libcholmod.a
> /home/martin/local/gcc/suitesparse/lib/libcamd.a
> /home/martin/local/gcc/suitesparse/lib/libcolamd.a
> /home/martin/local/gcc/suitesparse/lib/libccolamd.a
> /home/martin/local/gcc/suitesparse/lib/libufconfig.a
> /home/martin/local/gcc/hdf5-1.8.16/lib/libhdf5.so -lz -lz
> /home/martin/local/gcc/parmetis/lib/libparmetis.a
> /home/martin/local/gcc/parmetis/lib/libmetis.a
> /home/martin/local/gcc/parmetis/lib/libmetis.a
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/suitesparse/lib/libamd.a
> /home/martin/local/gcc/suitesparse/lib/libumfpack.a
> /home/martin/local/gcc/suitesparse/lib/libamd.a
> /home/martin/local/gcc/suitesparse/lib/libcholmod.a
> /home/martin/local/gcc/suitesparse/lib/libcamd.a
> /home/martin/local/gcc/suitesparse/lib/libcolamd.a
> /home/martin/local/gcc/suitesparse/lib/libccolamd.a
> /home/martin/local/gcc/suitesparse/lib/libufconfig.a
> /home/martin/local/gcc/hdf5-1.8.16/lib/libhdf5.so -lz
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/suitesparse/lib/libamd.a
> /home/martin/local/gcc/suitesparse/lib/libumfpack.a
> /home/martin/local/gcc/suitesparse/lib/libamd.a
> /home/martin/local/gcc/suitesparse/lib/libcholmod.a
> /home/martin/local/gcc/suitesparse/lib/libcamd.a
> /home/martin/local/gcc/suitesparse/lib/libcolamd.a
> /home/martin/local/gcc/suitesparse/lib/libccolamd.a
> /home/martin/local/gcc/suitesparse/lib/libufconfig.a
> /home/martin/local/gcc/hdf5-1.8.16/lib/libhdf5.so -lz
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/suitesparse/lib/libamd.a
> /home/martin/local/gcc/suitesparse/lib/libumfpack.a
> /home/martin/local/gcc/suitesparse/lib/libamd.a
> /home/martin/local/gcc/suitesparse/lib/libcholmod.a
> /home/martin/local/gcc/suitesparse/lib/libcamd.a
> /home/martin/local/gcc/suitesparse/lib/libcolamd.a
> /home/martin/local/gcc/suitesparse/lib/libccolamd.a
> /home/martin/local/gcc/suitesparse/lib/libufconfig.a
> /home/martin/local/gcc/hdf5-1.8.16/lib/libhdf5.so -lz
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/suitesparse/lib/libamd.a
> /home/martin/local/gcc/suitesparse/lib/libumfpack.a
> /home/martin/local/gcc/suitesparse/lib/libamd.a
> /home/martin/local/gcc/suitesparse/lib/libcholmod.a
> /home/martin/local/gcc/suitesparse/lib/libcamd.a
> /home/martin/local/gcc/suitesparse/lib/
> libcolamd.a /home/martin/local/gcc/suitesparse/lib/libccolamd.a
> /home/martin/local/gcc/suitesparse/lib/libufconfig.a
> /home/martin/local/gcc/hdf5-1.8.16/lib/libhdf5.so -lz
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so -lz
> /home/martin/local/gcc/parmetis/lib/libparmetis.a
> /home/martin/local/gcc/parmetis/lib/libmetis.a
> /home/martin/local/gcc/parmetis/lib/libmetis.a
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/lapack/lib/liblapack.so
> /home/martin/local/gcc/lapack/lib/libblas.so
> /home/martin/local/gcc/openmpi/lib/libmpi_cxx.so
> /home/martin/local/gcc/openmpi/lib/libmpi.so -lm
> /home/martin/local/gcc/parmetis/lib/libparmetis.a
> /home/martin/local/gcc/parmetis/lib/libmetis.a -lz
> -Wl,-rpath,/home/martin/local/gcc/trilinos-12.6.3/lib:/home/martin/local/gcc/lapack/lib:/home/martin/local/gcc/SuperLU/lib:/home/martin/local/gcc/hdf5-1.8.16/lib:/home/martin/local/gcc/openmpi/lib
> CMakeFiles/muelu_test.dir/src/Simple-Complex.cpp.o: In function `main':
> Simple-Complex.cpp:(.text+0x7c2): undefined reference to
> `MueLu::Hierarchy<std::complex<double>, int, int,
> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace>
> >::Hierarchy(Teuchos::RCP<Xpetra::Matrix<std::complex<double>, int,
> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> > > const&)'
> Simple-Complex.cpp:(.text+0xb1a): undefined reference to
> `MueLu::TrilinosSmoother<std::complex<double>, int, int,
> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace>
> >::TrilinosSmoother(std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> > const&,
> Teuchos::ParameterList const&, int const&)'
> Simple-Complex.cpp:(.text+0xbaf): undefined reference to
> `MueLu::SmootherFactory<std::complex<double>, int, int,
> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace>
> >::SmootherFactory(Teuchos::RCP<MueLu::SmootherPrototype<std::complex<double>,
> int, int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> > >)'
> Simple-Complex.cpp:(.text+0xc38): undefined reference to
> `MueLu::FactoryManager<std::complex<double>, int, int,
> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> >::SetFactory(std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> > const&,
> Teuchos::RCP<MueLu::FactoryBase const> const&)'
> Simple-Complex.cpp:(.text+0xc89): undefined reference to
> `MueLu::Hierarchy<std::complex<double>, int, int,
> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> >::Setup(MueLu::FactoryManagerBase const&, int, int)'
> Simple-Complex.cpp:(.text+0xdce): undefined reference to
> `MueLu::Hierarchy<std::complex<double>, int, int,
> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> >::IsPreconditioner(bool)'
> Simple-Complex.cpp:(.text+0xe5c): undefined reference to
> `MueLu::Hierarchy<std::complex<double>, int, int,
> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace>
> >::Iterate(Xpetra::MultiVector<std::complex<double>, int, int,
> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> > const&, Xpetra::MultiVector<std::complex<double>,
> int, int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> >&, MueLu::Hierarchy<std::complex<double>, int,
> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> >::ConvData, bool, int)'
> CMakeFiles/muelu_test.dir/src/Simple-Complex.cpp.o: In function
> `Xpetra::TpetraCrsMatrix<std::complex<double>, int, int,
> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> >::TpetraCrsMatrix(Teuchos::RCP<Xpetra::Map<int,
> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> > const> const&, unsigned long,
> Xpetra::ProfileType, Teuchos::RCP<Teuchos::ParameterList> const&)':
> Simple-Complex.cpp:(.text._ZN6Xpetra15TpetraCrsMatrixISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEC1ERKN7Teuchos3RCPIKNS_3MapIiiS8_EEEEmNS_11ProfileTypeERKNSB_INSA_13ParameterListEEE[_ZN6Xpetra15TpetraCrsMatrixISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEC1ERKN7Teuchos3RCPIKNS_3MapIiiS8_EEEEmNS_11ProfileTypeERKNSB_INSA_13ParameterListEEE]+0xde):
> undefined reference to `Tpetra::CrsMatrix<std::complex<double>, int,
> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace>, false>::CrsMatrix(Teuchos::RCP<Tpetra::Map<int,
> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> > const> const&, unsigned long,
> Tpetra::ProfileType, Teuchos::RCP<Teuchos::ParameterList> const&)'
> CMakeFiles/muelu_test.dir/src/Simple-Complex.cpp.o: In function
> `Xpetra::TpetraMultiVector<std::complex<double>, int, int,
> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> >::TpetraMultiVector(Teuchos::RCP<Xpetra::Map<int,
> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> > const> const&, unsigned long, bool)':
> Simple-Complex.cpp:(.text._ZN6Xpetra17TpetraMultiVectorISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEC2ERKN7Teuchos3RCPIKNS_3MapIiiS8_EEEEmb[_ZN6Xpetra17TpetraMultiVectorISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEC2ERKN7Teuchos3RCPIKNS_3MapIiiS8_EEEEmb]+0xd2):
> undefined reference to `Tpetra::MultiVector<std::complex<double>, int,
> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace>, false>::MultiVector(Teuchos::RCP<Tpetra::Map<int,
> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> > const> const&, unsigned long, bool)'
> CMakeFiles/muelu_test.dir/src/Simple-Complex.cpp.o: In function
> `Xpetra::TpetraMultiVector<std::complex<double>, int, int,
> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> >::TpetraMultiVector(Teuchos::RCP<Xpetra::Map<int,
> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> > const> const&, unsigned long, bool)':
> Simple-Complex.cpp:(.text._ZN6Xpetra17TpetraMultiVectorISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEC1ERKN7Teuchos3RCPIKNS_3MapIiiS8_EEEEmb[_ZN6Xpetra17TpetraMultiVectorISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEC1ERKN7Teuchos3RCPIKNS_3MapIiiS8_EEEEmb]+0xc0):
> undefined reference to `Tpetra::MultiVector<std::complex<double>, int,
> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace>, false>::MultiVector(Teuchos::RCP<Tpetra::Map<int,
> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> > const> const&, unsigned long, bool)'
> CMakeFiles/muelu_test.dir/src/Simple-Complex.cpp.o:(.rodata._ZTVN5MueLu14FactoryManagerISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEE[_ZTVN5MueLu14FactoryManagerISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEE]+0x50):
> undefined reference to `MueLu::FactoryManager<std::complex<double>,
> int, int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> >::GetFactory(std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> > const&) const'
> CMakeFiles/muelu_test.dir/src/Simple-Complex.cpp.o:(.rodata._ZTVN5MueLu9HierarchyISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEE[_ZTVN5MueLu9HierarchyISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEE]+0x50):
> undefined reference to `MueLu::Hierarchy<std::complex<double>, int,
> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> >::description[abi:cxx11]() const'
> CMakeFiles/muelu_test.dir/src/Simple-Complex.cpp.o:(.rodata._ZTVN5MueLu9HierarchyISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEE[_ZTVN5MueLu9HierarchyISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEE]+0x58):
> undefined reference to `MueLu::Hierarchy<std::complex<double>, int,
> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> >::describe(Teuchos::basic_FancyOStream<char,
> std::char_traits<char> >&, int) const'
> CMakeFiles/muelu_test.dir/src/Simple-Complex.cpp.o:(.rodata._ZTVN5MueLu9HierarchyISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEE[_ZTVN5MueLu9HierarchyISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEE]+0x60):
> undefined reference to `MueLu::Hierarchy<std::complex<double>, int,
> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> >::describe(Teuchos::basic_FancyOStream<char,
> std::char_traits<char> >&, Teuchos::EVerbosityLevel) const'
> CMakeFiles/muelu_test.dir/src/Simple-Complex.cpp.o:(.rodata._ZTVN5MueLu9HierarchyISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEE[_ZTVN5MueLu9HierarchyISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEE]+0x80):
> undefined reference to `non-virtual thunk to
> MueLu::Hierarchy<std::complex<double>, int, int,
> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> >::description() const'
> CMakeFiles/muelu_test.dir/src/Simple-Complex.cpp.o:(.rodata._ZTVN5MueLu9HierarchyISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEE[_ZTVN5MueLu9HierarchyISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEE]+0x88):
> undefined reference to `non-virtual thunk to
> MueLu::Hierarchy<std::complex<double>, int, int,
> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
> Kokkos::HostSpace> >::describe(Teuchos::basic_FancyOStream<char,
> std::char_traits<char> >&, Teuchos::EVerbosityLevel) const'
> CMakeFiles/muelu_test.dir/src/Simple-Complex.cpp.o:(.rodata._ZTVN5MueLu9HierarchyISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEE[_ZTVN5MueLu9HierarchyISt7complexIdEiiN6Kokkos6Compat23KokkosDeviceWrapperNodeINS3_6SerialENS3_9HostSpaceEEEEE]+0xa0):
> undefined reference to `non-virtual thunk to
> MueLu::Hierarchy<std::complex<double>, int, int,
>
>
>
> On 2016-05-27 14:57, Jonathan Smith wrote:
>> Hi Martin,
>>
>> When I'm working with CMake, I like to set VERBOSE=1 as an environment
>> variable before trying to make (ie
>>
>> $ export VERBOSE=1 in bash.
>>
>> This gives the actual gcc compiler lines which should make it easier
>> to see what libraries might be missing/causing the failure, and will
>> probably help folks on the list.
>>
>> Jonathan
>>
>> Tech-X UK Ltd
>>
>> On 27/05/2016 14:36, Martin Vymazal wrote:
>>
>>> Hello,
>>>
>>> I can't link an example that is provided with Trilinos sources
>>> (source file name is Simple-Complex.cpp, trilinos 12.6.3) to
>>> Trilinos. My CMakeLists.txt is as follows:
>>>
>>> CMAKE_MINIMUM_REQUIRED(VERSION 3.2 FATAL_ERROR)
>>>
>>> project(MUELU_TEST CXX)
>>>
>>> ADD_DEFINITIONS(-std=c++11)
>>>
>>> SET( CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/cmake/modules"
>>> ${CMAKE_MODULE_PATH})
>>>
>>> list(APPEND CMAKE_PREFIX_PATH "$ENV{HOME}/local/gcc/openmpi")
>>> find_package(MPI)
>>> include_directories( ${MPI_CXX_INCLUDE_PATH} )
>>>
>>> FIND_PACKAGE(Trilinos PATHS
>>> $ENV{HOME}/local/gcc/trilinos-12.6.3/lib/cmake/Trilinos )
>>>
>>> SET(MY_SOURCES src/Simple-Complex.cpp)
>>>
>>> INCLUDE_DIRECTORIES(${Trilinos_INCLUDE_DIRS}
>>> ${Ttrilinos_TPL_INCLUDE_DIRS})
>>> LINK_DIRECTORIES(${Trilinos_LIBRARY_DIRS}
>>> ${Trilinos_TPL_LIBRARY_DIRS})
>>> ADD_EXECUTABLE(muelu_test ${MY_SOURCES})
>>> TARGET_LINK_LIBRARIES(muelu_test ${Trilinos_LIBRARIES}
>>> ${Trilinos_TPL_LIBRARIES} ${MPI_CXX_LIBRARIES})
>>>
>>> and I see the following error (I pasted only the first part):
>>>
>>> CMakeFiles/muelu_test.dir/src/Simple-Complex.cpp.o: In function
>>> `main':
>>> Simple-Complex.cpp:(.text+0x7c2): undefined reference to
>>> `MueLu::Hierarchy<std::complex<double>, int, int,
>>> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
>>> Kokkos::HostSpace>
>>>> ::Hierarchy(Teuchos::RCP<Xpetra::Matrix<std::complex<double>, int,
>>> int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
>>> Kokkos::HostSpace> > > const&)'
>>> Simple-Complex.cpp:(.text+0xb1a): undefined reference to
>>> `MueLu::TrilinosSmoother<std::complex<double>, int, int,
>>> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
>>> Kokkos::HostSpace>
>>>> ::TrilinosSmoother(std::__cxx11::basic_string<char,
>>> std::char_traits<char>, std::allocator<char> > const&,
>>> Teuchos::ParameterList const&, int const&)'
>>> Simple-Complex.cpp:(.text+0xbaf): undefined reference to
>>> `MueLu::SmootherFactory<std::complex<double>, int, int,
>>> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
>>> Kokkos::HostSpace>
>>>>
>> ::SmootherFactory(Teuchos::RCP<MueLu::SmootherPrototype<std::complex<double>,
>>
>>> int, int, Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
>>> Kokkos::HostSpace> > >)'
>>> Simple-Complex.cpp:(.text+0xc38): undefined reference to
>>> `MueLu::FactoryManager<std::complex<double>, int, int,
>>> Kokkos::Compat::KokkosDeviceWrapperNode<Kokkos::Serial,
>>> Kokkos::HostSpace> >::SetFactory(std::__cxx11::basic_string<char,
>>> std::char_traits<char>, std::allocator<char> > const&,
>>> Teuchos::RCP<MueLu::FactoryBase const> const&)'
>>>
>>> To make sure that muelu is specified to link to the executable, I
>>> also tried
>>>
>>> TARGET_LINK_LIBRARIES(muelu_test muelu muelu-adapters
>>> muelu-interface ${Trilinos_LIBRARIES} ${Trilinos_TPL_LIBRARIES}
>>> ${MPI_CXX_LIBRARIES})
>>>
>>> but this does not change anything. The libraries libmuelu.so
>>> libmuelu-interface.so and libmuelu-adapters.so are all present in
>>> the lib folder where Trilinos is installed. I have no problems
>>> compiling and linking other code (of my own, does not use MueLU) to
>>> Trilinos. Could you please advise how to resolve this? Thank you.
>>>
>>> Best regards,
>>>
>>> Martin
>>> _______________________________________________
>>> Trilinos-Users mailing list
>>> Trilinos-Users at trilinos.org
>>> https://trilinos.org/mailman/listinfo/trilinos-users [1]
>>
>> --
>> Jonathan Smith
>> Tech-X UK Ltd
>> www.txcorp.co.uk [2]
>>
>>
>> Links:
>> ------
>> [1] https://trilinos.org/mailman/listinfo/trilinos-users
>> [2] http://www.txcorp.co.uk
> _______________________________________________
> Trilinos-Users mailing list
> Trilinos-Users at trilinos.org
> https://trilinos.org/mailman/listinfo/trilinos-users
>
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