[Trilinos-Users] Problems with Anasazi (Trilinos 12.6.3) installation with MPI

[Mallikarjun Karra]

Dear All,


I have run into some troubles while installing Anasazi (using MPI for 
parallel computation) on our cluster (Rocks 6.1.1 - Sand Boa). Please 
find attached my configure file along with the logs.  There are two 
problems (verbose error messages at the end of the e-mail):

1. Error: /usr/bin/ld: cannot find -lgcc_s  ----> I tried to remedy 
this by linking to 'libgcc_s.so', as you shall notice in the 
do-configure.sh file, but to no avail. (Also, for some reason, this 
error does not get written to my 'OUTLOG'.)

2. Mangling issues (please see CMakeError.log)

I'm a new user and would be really grateful if you could help me solve 
the above issues, as I was unable to find a definite fix in spite of 
Googling. The objective is to use Anasazi eigensolvers to diagonalise 
large matrices on the cluster.



PS: Serial installation was a success.




Warm regards,

Mallikarjun Karra.



----

1. 
/share/apps/intel/compilers_and_libraries_2016.0.109/linux/mpi/intel64/lib/debug_mt/libmpi.a(mpid_init.o): 
In function `MPID_nem_impi_create_numa_nodes_map':
/tmp/mpi5.xtmpdir.7b663e0dc22b2304e487307e376dc132.39050_32e/mpi5.32e.ww29.20150715/dev/x86_64/debug_mt/../../src/mpid/ch3/src/mpid_init.c:422: 
warning: Using 'dlopen' in statically linked applications requires at 
runtime the shared libraries from the glibc version used for linking
/usr/bin/ld: cannot find -lgcc_s
collect2: ld returned 1 exit status
make[2]: *** [packages/epetra/test/BlockMap/Epetra_BlockMap_test.exe] 
Error 1
make[1]: *** 
[packages/epetra/test/BlockMap/CMakeFiles/Epetra_BlockMap_test.dir/all] 
Error 2
make: *** [all] Error 2


2. Performing C++ SOURCE FILE Test HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM 
failed with the following output:
Change Dir: 
/home/mkarra/NMol_TrilinosProject/trilinos-12.6.3-Source/NewBuild_AnasaziParallel/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/gmake" "cmTC_31022/fast"
/usr/bin/gmake -f CMakeFiles/cmTC_31022.dir/build.make 
CMakeFiles/cmTC_31022.dir/build
gmake[1]: Entering directory 
`/home/mkarra/NMol_TrilinosProject/trilinos-12.6.3-Source/NewBuild_AnasaziParallel/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_31022.dir/src.cxx.o
/share/apps/intel/compilers_and_libraries_2016.0.109/linux/mpi/intel64/bin/mpicxx 
     -ansi -pedantic -Wall -L/lib64/libgcc_s.so.1 -lgcc_s -fopenmp 
-DHAVE_FIXABLE_COMPLEX_BLAS_PROBLEM   -o 
CMakeFiles/cmTC_31022.dir/src.cxx.o -c 
/home/mkarra/NMol_TrilinosProject/trilinos-12.6.3-Source/NewBuild_AnasaziParallel/CMakeFiles/CMakeTmp/src.cxx
Linking CXX executable cmTC_31022
/home/mkarra/NMol_TrilinosProject/trilinos-12.6.3-Source/CMAKE/bin/cmake 
-E cmake_link_script CMakeFiles/cmTC_31022.dir/link.txt --verbose=1
/share/apps/intel/compilers_and_libraries_2016.0.109/linux/mpi/intel64/bin/mpicxx 
     -ansi -pedantic -Wall -L/lib64/libgcc_s.so.1 -lgcc_s -fopenmp 
-DHAVE_FIXABLE_COMPLEX_BLAS_PROBLEM    
CMakeFiles/cmTC_31022.dir/src.cxx.o  -o cmTC_31022 -rdynamic -mkl
CMakeFiles/cmTC_31022.dir/src.cxx.o: In function `main':
src.cxx:(.text+0xc5): undefined reference to `cdotc_'
collect2: ld returned 1 exit status
gmake[1]: *** [cmTC_31022] Error 1
gmake[1]: Leaving directory 
`/home/mkarra/NMol_TrilinosProject/trilinos-12.6.3-Source/NewBuild_AnasaziParallel/CMakeFiles/CMakeTmp'
gmake: *** [cmTC_31022/fast] Error 2
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