[Trilinos-Users] [EXTERNAL] Re: Trilinos Compilation Error on Linux
Sai P Uppati
uppatis at utexas.edu
Tue Jun 7 12:16:34 EDT 2016
Andrew,
Here is the output:
icpc
icpc -I/software/openmpi/PBS/1.10.2/intel_16/include -pthread
-L/software/PBSpro/default//lib -Wl,-rpath
-Wl,/software/PBSpro/default//lib -Wl,-rpath
-Wl,/software/openmpi/PBS/1.10.2/intel_16/lib -Wl,--enable-new-dtags
-L/software/openmpi/PBS/1.10.2/intel_16/lib -lmpi_cxx -lmpi
icpc version 16.0.2 (gcc version 4.4.7 compatibility)
>From this output, it seems to me that the intel compilers are not too
outdated and that mpicxx is correctly wrapping icpc.
Sai
On Tue, Jun 7, 2016 at 10:38 AM, Bradley, Andrew Michael <ambradl at sandia.gov
> wrote:
> Hi Sai,
>
>
> I got lost in the details. Let's make sure that the current setup is
> correct. Can you run these three commands and report the output?
>
>
> echo $OMPI_CXX; mpicxx -show; icpc -v
>
>
> Andrew
>
>
>
> ------------------------------
> *From:* Trilinos-Users <trilinos-users-bounces at trilinos.org> on behalf of
> Sai P Uppati <uppatis at utexas.edu>
> *Sent:* Tuesday, June 7, 2016 7:25 AM
> *To:* Heroux, Michael A
> *Cc:* Bartlett, Roscoe A; John T. Foster; trilinos-users at trilinos.org
>
> *Subject:* [EXTERNAL] Re: [Trilinos-Users] Trilinos Compilation Error on
> Linux
>
> Mike, John and Ross,
>
> I don't believe the problem in this case is mixing up the c and c++
> compilers. I used the verbose option during the compilation of trilinos. I
> see that mpicc is being used for .c files and mpicxx is being used for .cpp
> appropriately during the compilation. I also know, as I have checked, that
> mpicc and mpicxx are correctly wrapping icc and icpc, respectively. But I
> still end up getting these errors:
>
> [ 0%] Building CXX object
> packages/kokkos/core/src/CMakeFiles/kokkoscore.dir/impl/KokkosExp_SharedAlloc.cpp.o
> cd /home/de566876/source_codes/Trilinos/build/packages/kokkos/core/src &&
> /home/de566876/projects/openmpi-1.10.2/bin/mpicxx -Dkokkoscore_EXPORTS
> -I/home/de566876/source_codes/Trilinos/build
> -I/home/de566876/source_codes/Trilinos/build/packages/kokkos/core/src
> -I/home/de566876/source_codes/Trilinos/packages/kokkos/core/src -std=c++11
> -O2 -Wall -ansi -Wno-long-long -fp-model precise -fp-model source -ip
> -xHost
> -I/software/comp_intel/parallel_studio_xe_2016_update2/compilers_and_libraries_2016.2.181/linux/mkl/include
> -I/home/de566876/projects/netcdf/include -std=c++11 -O3 -DNDEBUG -fPIC -o
> CMakeFiles/kokkoscore.dir/impl/KokkosExp_SharedAlloc.cpp.o -c
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp
> In file included from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(53),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_HostSpace.hpp(160):
> error: invalid type for defaulted constructor
> HostSpace( HostSpace && rhs ) = default ;
> ^
>
> In file included from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(53),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_HostSpace.hpp(162):
> error: invalid type for defaulted assignment operator
> HostSpace & operator = ( HostSpace && ) = default ;
> ^
>
> In file included from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(55),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_ExecPolicy.hpp(259):
> error: invalid type for defaulted constructor
> RangePolicy(RangePolicy&&) = default;
> ^
>
> In file included from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_ViewMapping.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(385),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Layout.hpp(80):
> error: invalid type for defaulted constructor
> LayoutLeft( LayoutLeft && ) = default ;
> ^
>
> In file included from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_ViewMapping.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(385),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Layout.hpp(82):
> error: invalid type for defaulted assignment operator
> LayoutLeft & operator = ( LayoutLeft && ) = default ;
> ^
>
> In file included from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_ViewMapping.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(385),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Layout.hpp(112):
> error: invalid type for defaulted constructor
> LayoutRight( LayoutRight && ) = default ;
> ^
>
> In file included from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_ViewMapping.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(385),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Layout.hpp(114):
> error: invalid type for defaulted assignment operator
> LayoutRight & operator = ( LayoutRight && ) = default ;
> ^
>
> In file included from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_ViewMapping.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(385),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Layout.hpp(218):
> error: invalid type for defaulted constructor
> LayoutTileLeft( LayoutTileLeft && ) = default ;
> ^
>
> In file included from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_ViewMapping.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(385),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Layout.hpp(220):
> error: invalid type for defaulted assignment operator
> LayoutTileLeft & operator = ( LayoutTileLeft && ) = default ;
> ^
>
> In file included from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(68),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_MemoryPool.hpp(164):
> error: invalid type for defaulted constructor
> Bitset( Bitset && ) = default;
> ^
>
> In file included from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(68),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_MemoryPool.hpp(166):
> error: invalid type for defaulted assignment operator
> Bitset & operator = ( Bitset && ) = default;
> ^
>
> In file included from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(68),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_MemoryPool.hpp(657):
> error: invalid type for defaulted constructor
> MemoryPool( MemoryPool && ) = default;
> ^
>
> In file included from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(68),
> from
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_MemoryPool.hpp(659):
> error: invalid type for defaulted assignment operator
> MemoryPool & operator = ( MemoryPool && ) = default;
> ^
>
> compilation aborted for
> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp
> (code 2)
>
> I don't think this is an incorrect wrapping problem. What do you guys
> think?
>
> Sai
>
> On Mon, Jun 6, 2016 at 5:26 PM, Heroux, Michael A <maherou at sandia.gov>
> wrote:
>
>> You should be able to use which ever C++ compiler you want (as long as it
>> is compatible with the C or Fortran compiler you are using, if any) by
>> defining OMPI_CXX=icpc. To see what is going on in detail when you
>> compiler, use the following make command:
>>
>>
>>
>> make VERBOSE=1
>>
>>
>>
>> This will give you the details of what is going on, in particular which
>> compiler is being used.
>>
>>
>>
>> *From: *Sai P Uppati <uppatis at utexas.edu>
>> *Date: *Monday, June 6, 2016 at 5:10 PM
>> *To: *Michael A Heroux <maherou at sandia.gov>
>> *Cc: *"John T. Foster" <jfoster at austin.utexas.edu>, Roscoe Bartlett <
>> rabartl at sandia.gov>, Trilinos Users <trilinos-users at trilinos.org>
>>
>> *Subject: *[EXTERNAL] Re: [Trilinos-Users] Trilinos Compilation Error on
>> Linux
>>
>>
>>
>> I built my own version of OpenMPI 1.10.2 with CXX=icpc in the
>> configuration, and even using that, I'm still getting the same compilation
>> error regarding the //.
>>
>>
>>
>> Sai
>>
>>
>>
>> On Mon, Jun 6, 2016 at 1:59 PM, Heroux, Michael A <maherou at sandia.gov>
>> wrote:
>>
>> You can override the default definition of the C++ compiler for OpenMPI
>> by using the variable OMPI_CXX. See this page for details:
>>
>>
>>
>> https://www.open-mpi.org/doc/v1.8/man1/mpicxx.1.php
>>
>>
>>
>> Also, building your own installation of OpenMPI is not too hard, if you
>> want to go down that path.
>>
>>
>>
>> Mike
>>
>>
>>
>> *From: *Trilinos-Users <trilinos-users-bounces at trilinos.org> on behalf
>> of Sai P Uppati <uppatis at utexas.edu>
>> *Date: *Monday, June 6, 2016 at 1:43 PM
>> *To: *"John T. Foster" <jfoster at austin.utexas.edu>
>> *Cc: *Roscoe Bartlett <rabartl at sandia.gov>, Trilinos Users <
>> trilinos-users at trilinos.org>
>> *Subject: *[EXTERNAL] Re: [Trilinos-Users] Trilinos Compilation Error on
>> Linux
>>
>>
>>
>> I've never tried building OpenMPI myself I think. Is it a big
>> undertaking? If so, I can request it to be correctly built this time by the
>> system admins.
>>
>>
>>
>> If not, I can give it a shot myself.
>>
>>
>>
>> Sai
>>
>>
>>
>> On Mon, Jun 6, 2016 at 1:35 PM, John T. Foster <jfoster at austin.utexas.edu>
>> wrote:
>>
>> Some of those flags are specific to Intel compilers. Again, my advice
>> would be to compile openmpi against the correct Intel compilers.
>>
>>
>>
>> JTF
>>
>>
>>
>> On Mon, Jun 6, 2016 at 1:29 PM, Sai P Uppati <uppatis at utexas.edu> wrote:
>>
>> John,
>>
>>
>>
>> There is another OpenMPI module version 1.10.2 that is based on GNU
>> compilers version 4.7.3. When I load this module, the mpicc and mpicxx wrap
>> gcc and g++ compilers, respectively, which is correct. However, when I
>> try and configure the Trilinos build with the a very similar cmake script
>> as your stampede one on GitHub Gists, I have problems with some of the
>> CMAKE C and CXX flags:
>>
>>
>>
>> Building C object CMakeFiles/cmTC_a870f.dir/testCCompiler.c.o
>>
>>
>>
>> /software/openmpi/PBS/1.10.2/gcc_47/bin/mpicc -O2 -Wall -ansi
>>
>> -Wno-long-long -fp-model precise -fp-model source -ip -xHost -I/include
>>
>> -I/home/de566876/projects/netcdf/include -o
>>
>> CMakeFiles/cmTC_a870f.dir/testCCompiler.c.o -c
>>
>>
>> /home/de566876/source_codes/Trilinos/build/CMakeFiles/CMakeTmp/testCCompiler.c
>>
>>
>>
>>
>>
>> gcc: error: unrecognized command line option ‘-fp-model’
>>
>>
>>
>> gcc: error: precise: No such file or directory
>>
>>
>>
>> gcc: error: unrecognized command line option ‘-fp-model’
>>
>>
>>
>> gcc: error: source: No such file or directory
>>
>>
>>
>> gcc: error: unrecognized command line option ‘-ip’
>>
>>
>>
>> gmake[1]: *** [CMakeFiles/cmTC_a870f.dir/testCCompiler.c.o] Error 1
>>
>>
>>
>> gmake[1]: Leaving directory
>>
>> `/home/de566876/source_codes/Trilinos/build/CMakeFiles/CMakeTmp'
>>
>>
>>
>> gmake: *** [cmTC_a870f/fast] Error 2
>>
>>
>>
>> I wonder if these flags are essential. If they are, what could be causing
>> these errors in the configuration?
>>
>>
>>
>> Sai
>>
>>
>>
>> On Mon, Jun 6, 2016 at 1:13 PM, John T. Foster <jfoster at austin.utexas.edu>
>> wrote:
>>
>> You probably need to rebuild openmpi setting the variable CXX=icpc at
>> configuration.
>>
>> JTF
>>
>>
>>
>>
>>
>> On Mon, Jun 6, 2016 at 1:07 PM, Sai P Uppati <uppatis at utexas.edu> wrote:
>>
>> It looks like the mpicxx wrapper wraps icc again, NOT icpc.
>>
>>
>>
>> mpicc -show returns:
>>
>>
>>
>> icc -I/software/openmpi/PBS/1.10.2/intel_16/include -pthread
>> -L/software/PBSpro/default//lib -Wl,-rpath
>> -Wl,/software/PBSpro/default//lib -Wl,-rpath
>> -Wl,/software/openmpi/PBS/1.10.2/intel_16/lib -Wl,--enable-new-dtags
>> -L/software/openmpi/PBS/1.10.2/intel_16/lib -lmpi
>>
>>
>>
>> mpicxx -show returns:
>>
>>
>>
>> icc -I/software/openmpi/PBS/1.10.2/intel_16/include -pthread
>> -L/software/PBSpro/default//lib -Wl,-rpath
>> -Wl,/software/PBSpro/default//lib -Wl,-rpath
>> -Wl,/software/openmpi/PBS/1.10.2/intel_16/lib -Wl,--enable-new-dtags
>> -L/software/openmpi/PBS/1.10.2/intel_16/lib -lmpi_cxx -lmpi
>>
>>
>>
>> If I type in ic and hit TAB, in the results, both icc and icpc are
>> found. It just looks like icpc is unused. Is this something I can do a
>> simple workaround for? Or do I need to ask the system admins to fix the
>> wrappers?
>>
>>
>>
>> Sai
>>
>>
>>
>> On Mon, Jun 6, 2016 at 12:55 PM, John T. Foster <
>> jfoster at austin.utexas.edu> wrote:
>>
>> Sai,
>>
>> What does mpicxx -show return? It should be wrapping icpc.
>>
>> JTF
>>
>>
>>
>>
>>
>> On Mon, Jun 6, 2016 at 12:47 PM, Heroux, Mike <MHeroux at csbsju.edu> wrote:
>>
>> It looks like you are compiling C++ with a C compiler. This will not
>> work.
>>
>>
>>
>> Mike
>>
>>
>>
>> *From: *Trilinos-Users <trilinos-users-bounces at trilinos.org> on behalf
>> of Sai P Uppati <uppatis at utexas.edu>
>> *Date: *Monday, June 6, 2016 at 10:26 AM
>> *To: *"John T. Foster" <jfoster at austin.utexas.edu>
>> *Cc: *Roscoe Bartlett <rabartl at sandia.gov>, Trilinos Users <
>> trilinos-users at trilinos.org>
>> *Subject: *Re: [Trilinos-Users] [EXTERNAL] Trilinos Compilation Error on
>> Linux
>>
>>
>>
>> I didn't notice before I think, but I'm getting other errors as well,
>> besides the one I showed. Examples include:
>>
>>
>>
>> [ 0%] Building C object
>> packages/seacas/libraries/chaco/CMakeFiles/chaco.dir/assign/assign_out.c.o
>>
>> In file included from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(53),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
>>
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_HostSpace.hpp(160):
>> *error*: invalid type for defaulted constructor
>>
>> HostSpace( HostSpace && rhs ) = default ;
>>
>> ^
>>
>>
>>
>> In file included from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(53),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
>>
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_HostSpace.hpp(162):
>> *error*: invalid type for defaulted assignment operator
>>
>> HostSpace & operator = ( HostSpace && ) = default ;
>>
>> ^
>>
>>
>>
>> In file included from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(55),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
>>
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_ExecPolicy.hpp(259):
>> *error*: invalid type for defaulted constructor
>>
>> RangePolicy(RangePolicy&&) = default;
>>
>> ^
>>
>>
>>
>> Is this also a compiler issue? The error with the netcdf.h with the
>> comment beginning with "//" is still there as well. Any idea what the
>> problem could be?
>>
>>
>>
>> Sai
>>
>>
>>
>>
>>
>> On Mon, Jun 6, 2016 at 9:25 AM, Sai P Uppati <uppatis at utexas.edu> wrote:
>>
>> Ross, sorry I misunderstood. John, thanks for that clarification. It
>> looks like I was using
>>
>>
>>
>> icc version 15.0.1 (gcc version 4.7.3 compatibility)
>>
>>
>>
>> And I changed to
>>
>>
>>
>> icc version 16.0.2 (gcc version 4.4.7 compatibility)
>>
>>
>>
>> Both of them are having the same issue.
>>
>>
>>
>> Sai
>>
>>
>>
>>
>>
>>
>>
>> On Mon, Jun 6, 2016 at 8:48 AM, John T. Foster <jfoster at austin.utexas.edu>
>> wrote:
>>
>> Sai,
>>
>> mpicc and mpicxx are just wrappers on the underlying compilers which are
>> most likely some version of gcc. You can see the full compiler and
>> linker command with mpicc -show. If the underlying compiler is in fact
>> gcc, you can see the version with gcc -v.
>>
>> JTF
>>
>>
>>
>>
>>
>> On Mon, Jun 6, 2016 at 8:20 AM, Sai P Uppati <uppatis at utexas.edu> wrote:
>>
>> Hi Ross,
>>
>>
>>
>> It looks like I'm using mpicc, mpicxx compilers from the OpemMPI 1.6.5
>> version. Are these too old for compiling the latest version of Trilinos?
>>
>>
>>
>> Sai
>>
>>
>>
>> On Sat, Jun 4, 2016 at 9:15 PM, Bartlett, Roscoe A <rabartl at sandia.gov>
>> wrote:
>>
>> Looks like your C compiler is not accepting C99 code. C89 does not
>> accept // as a comment. What C compiler are you using?
>>
>> -Ross
>> ------------------------------
>>
>> *From:* Trilinos-Users <trilinos-users-bounces at trilinos.org> on behalf
>> of Sai P Uppati <uppatis at utexas.edu>
>> *Sent:* Saturday, June 4, 2016 5:37:29 PM
>> *To:* trilinos-users at trilinos.org; trilinos-users at software.sandia.gov
>> *Subject:* [EXTERNAL] [Trilinos-Users] Trilinos Compilation Error on
>> Linux
>>
>>
>>
>> Hi,
>>
>>
>>
>> I'm trying to compile Trilinos (latest version: GitHub version) on a
>> Linux Red Hat distribution, and I'm getting a compilation error regarding
>> netcdf.h:
>>
>>
>>
>> Building C object
>> packages/seacas/libraries/supes/CMakeFiles/supes.dir/ext_lib/exmemy.c.o
>>
>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/src/ex_close.c(50):
>> warning #14: extra text after expected end of preprocessing directive
>>
>> #include "exodusII.h" // for ex_err, exerrval, etc
>>
>> ^
>>
>>
>>
>> In file included from
>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/include/exodusII.h(46),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/src/ex_add_attr.c(35):
>>
>> /home/de566876/projects/netcdf/include/netcdf.h(1951): error: expected a
>> declaration
>>
>> //EXTERNL int nc_finalize();
>>
>> ^
>>
>>
>>
>> [ 5%] In file included from
>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/include/exodusII.h(46),
>>
>> from
>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/src/ex_close.c(50):
>>
>> /home/de566876/projects/netcdf/include/netcdf.h(1951): error: expected a
>> declaration
>>
>> //EXTERNL int nc_finalize();
>>
>> ^
>>
>>
>>
>> Does this error have to do with the netcdf build (version 4.4.0, which
>> passed all the tests in the test suite by the way)?
>>
>>
>>
>> Sincerely,
>>
>> Sai Uppati
>>
>>
>>
>>
>>
>> *Error! Filename not specified.*ᐧ
>>
>>
>>
>>
>>
>> _______________________________________________
>> Trilinos-Users mailing list
>> Trilinos-Users at trilinos.org
>> https://trilinos.org/mailman/listinfo/trilinos-users
>>
>>
>>
>>
>>
>>
>>
>>
>> _______________________________________________
>> Trilinos-Users mailing list
>> Trilinos-Users at trilinos.org
>> https://trilinos.org/mailman/listinfo/trilinos-users
>>
>>
>>
>>
>>
>>
>> _______________________________________________
>> Trilinos-Users mailing list
>> Trilinos-Users at trilinos.org
>> https://trilinos.org/mailman/listinfo/trilinos-users
>>
>>
>>
>>
>>
>>
>> _______________________________________________
>> Trilinos-Users mailing list
>> Trilinos-Users at trilinos.org
>> https://trilinos.org/mailman/listinfo/trilinos-users
>>
>>
>>
>>
>>
>>
>>
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://trilinos.org/pipermail/trilinos-users/attachments/20160607/eed703d4/attachment.html>
More information about the Trilinos-Users
mailing list