[Trilinos-Users] Trilinos Compilation Error on Linux
John T. Foster
jfoster at austin.utexas.edu
Mon Jun 6 14:13:12 EDT 2016
You probably need to rebuild openmpi setting the variable CXX=icpc at
configuration.
JTF
On Mon, Jun 6, 2016 at 1:07 PM, Sai P Uppati <uppatis at utexas.edu> wrote:
> It looks like the mpicxx wrapper wraps icc again, NOT icpc.
>
> mpicc -show returns:
>
> icc -I/software/openmpi/PBS/1.10.2/intel_16/include -pthread
> -L/software/PBSpro/default//lib -Wl,-rpath
> -Wl,/software/PBSpro/default//lib -Wl,-rpath
> -Wl,/software/openmpi/PBS/1.10.2/intel_16/lib -Wl,--enable-new-dtags
> -L/software/openmpi/PBS/1.10.2/intel_16/lib -lmpi
>
> mpicxx -show returns:
>
> icc -I/software/openmpi/PBS/1.10.2/intel_16/include -pthread
> -L/software/PBSpro/default//lib -Wl,-rpath
> -Wl,/software/PBSpro/default//lib -Wl,-rpath
> -Wl,/software/openmpi/PBS/1.10.2/intel_16/lib -Wl,--enable-new-dtags
> -L/software/openmpi/PBS/1.10.2/intel_16/lib -lmpi_cxx -lmpi
>
> If I type in ic and hit TAB, in the results, both icc and icpc are found.
> It just looks like icpc is unused. Is this something I can do a simple
> workaround for? Or do I need to ask the system admins to fix the wrappers?
>
> Sai
>
> On Mon, Jun 6, 2016 at 12:55 PM, John T. Foster <jfoster at austin.utexas.edu
> > wrote:
>
>> Sai,
>>
>> What does mpicxx -show return? It should be wrapping icpc.
>>
>> JTF
>>
>>
>> On Mon, Jun 6, 2016 at 12:47 PM, Heroux, Mike <MHeroux at csbsju.edu> wrote:
>>
>>> It looks like you are compiling C++ with a C compiler. This will not
>>> work.
>>>
>>>
>>>
>>> Mike
>>>
>>>
>>>
>>> *From: *Trilinos-Users <trilinos-users-bounces at trilinos.org> on behalf
>>> of Sai P Uppati <uppatis at utexas.edu>
>>> *Date: *Monday, June 6, 2016 at 10:26 AM
>>> *To: *"John T. Foster" <jfoster at austin.utexas.edu>
>>> *Cc: *Roscoe Bartlett <rabartl at sandia.gov>, Trilinos Users <
>>> trilinos-users at trilinos.org>
>>> *Subject: *Re: [Trilinos-Users] [EXTERNAL] Trilinos Compilation Error
>>> on Linux
>>>
>>>
>>>
>>> I didn't notice before I think, but I'm getting other errors as well,
>>> besides the one I showed. Examples include:
>>>
>>>
>>>
>>> [ 0%] Building C object
>>> packages/seacas/libraries/chaco/CMakeFiles/chaco.dir/assign/assign_out.c.o
>>>
>>> In file included from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(53),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
>>>
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_HostSpace.hpp(160):
>>> *error*: invalid type for defaulted constructor
>>>
>>> HostSpace( HostSpace && rhs ) = default ;
>>>
>>> ^
>>>
>>>
>>>
>>> In file included from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(53),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
>>>
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_HostSpace.hpp(162):
>>> *error*: invalid type for defaulted assignment operator
>>>
>>> HostSpace & operator = ( HostSpace && ) = default ;
>>>
>>> ^
>>>
>>>
>>>
>>> In file included from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(55),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
>>>
>>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_ExecPolicy.hpp(259):
>>> *error*: invalid type for defaulted constructor
>>>
>>> RangePolicy(RangePolicy&&) = default;
>>>
>>> ^
>>>
>>>
>>>
>>> Is this also a compiler issue? The error with the netcdf.h with the
>>> comment beginning with "//" is still there as well. Any idea what the
>>> problem could be?
>>>
>>>
>>>
>>> Sai
>>>
>>>
>>>
>>>
>>>
>>> On Mon, Jun 6, 2016 at 9:25 AM, Sai P Uppati <uppatis at utexas.edu> wrote:
>>>
>>> Ross, sorry I misunderstood. John, thanks for that clarification. It
>>> looks like I was using
>>>
>>>
>>>
>>> icc version 15.0.1 (gcc version 4.7.3 compatibility)
>>>
>>>
>>>
>>> And I changed to
>>>
>>>
>>>
>>> icc version 16.0.2 (gcc version 4.4.7 compatibility)
>>>
>>>
>>>
>>> Both of them are having the same issue.
>>>
>>>
>>>
>>> Sai
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> On Mon, Jun 6, 2016 at 8:48 AM, John T. Foster <
>>> jfoster at austin.utexas.edu> wrote:
>>>
>>> Sai,
>>>
>>> mpicc and mpicxx are just wrappers on the underlying compilers which
>>> are most likely some version of gcc. You can see the full compiler and
>>> linker command with mpicc -show. If the underlying compiler is in fact
>>> gcc, you can see the version with gcc -v.
>>>
>>> JTF
>>>
>>>
>>>
>>>
>>>
>>> On Mon, Jun 6, 2016 at 8:20 AM, Sai P Uppati <uppatis at utexas.edu> wrote:
>>>
>>> Hi Ross,
>>>
>>>
>>>
>>> It looks like I'm using mpicc, mpicxx compilers from the OpemMPI 1.6.5
>>> version. Are these too old for compiling the latest version of Trilinos?
>>>
>>>
>>>
>>> Sai
>>>
>>>
>>>
>>> On Sat, Jun 4, 2016 at 9:15 PM, Bartlett, Roscoe A <rabartl at sandia.gov>
>>> wrote:
>>>
>>> Looks like your C compiler is not accepting C99 code. C89 does not
>>> accept // as a comment. What C compiler are you using?
>>>
>>> -Ross
>>> ------------------------------
>>>
>>> *From:* Trilinos-Users <trilinos-users-bounces at trilinos.org> on behalf
>>> of Sai P Uppati <uppatis at utexas.edu>
>>> *Sent:* Saturday, June 4, 2016 5:37:29 PM
>>> *To:* trilinos-users at trilinos.org; trilinos-users at software.sandia.gov
>>> *Subject:* [EXTERNAL] [Trilinos-Users] Trilinos Compilation Error on
>>> Linux
>>>
>>>
>>>
>>> Hi,
>>>
>>>
>>>
>>> I'm trying to compile Trilinos (latest version: GitHub version) on a
>>> Linux Red Hat distribution, and I'm getting a compilation error regarding
>>> netcdf.h:
>>>
>>>
>>>
>>> Building C object
>>> packages/seacas/libraries/supes/CMakeFiles/supes.dir/ext_lib/exmemy.c.o
>>>
>>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/src/ex_close.c(50):
>>> warning #14: extra text after expected end of preprocessing directive
>>>
>>> #include "exodusII.h" // for ex_err, exerrval, etc
>>>
>>> ^
>>>
>>>
>>>
>>> In file included from
>>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/include/exodusII.h(46),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/src/ex_add_attr.c(35):
>>>
>>> /home/de566876/projects/netcdf/include/netcdf.h(1951): error: expected a
>>> declaration
>>>
>>> //EXTERNL int nc_finalize();
>>>
>>> ^
>>>
>>>
>>>
>>> [ 5%] In file included from
>>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/include/exodusII.h(46),
>>>
>>> from
>>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/src/ex_close.c(50):
>>>
>>> /home/de566876/projects/netcdf/include/netcdf.h(1951): error: expected a
>>> declaration
>>>
>>> //EXTERNL int nc_finalize();
>>>
>>> ^
>>>
>>>
>>>
>>> Does this error have to do with the netcdf build (version 4.4.0, which
>>> passed all the tests in the test suite by the way)?
>>>
>>>
>>>
>>> Sincerely,
>>>
>>> Sai Uppati
>>>
>>>
>>>
>>>
>>>
>>> [image: mage removed by sender.]ᐧ
>>>
>>>
>>>
>>>
>>>
>>> _______________________________________________
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>>>
>>>
>>>
>>>
>>>
>>>
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>>>
>>
>
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