[Trilinos-Users] Trilinos Compilation Error on Linux

Sai P Uppati uppatis at utexas.edu
Mon Jun 6 14:07:25 EDT 2016 

It looks like the mpicxx wrapper wraps icc again, NOT icpc.

mpicc -show returns:

icc -I/software/openmpi/PBS/1.10.2/intel_16/include -pthread
-L/software/PBSpro/default//lib -Wl,-rpath
-Wl,/software/PBSpro/default//lib -Wl,-rpath
-Wl,/software/openmpi/PBS/1.10.2/intel_16/lib -Wl,--enable-new-dtags
-L/software/openmpi/PBS/1.10.2/intel_16/lib -lmpi

mpicxx -show returns:

icc -I/software/openmpi/PBS/1.10.2/intel_16/include -pthread
-L/software/PBSpro/default//lib -Wl,-rpath
-Wl,/software/PBSpro/default//lib -Wl,-rpath
-Wl,/software/openmpi/PBS/1.10.2/intel_16/lib -Wl,--enable-new-dtags
-L/software/openmpi/PBS/1.10.2/intel_16/lib -lmpi_cxx -lmpi

If I type in ic and hit TAB, in the results, both icc and icpc are found.
It just looks like icpc is unused. Is this something I can do a simple
workaround for? Or do I need to ask the system admins to fix the wrappers?

Sai

On Mon, Jun 6, 2016 at 12:55 PM, John T. Foster <jfoster at austin.utexas.edu>
wrote:

> Sai,
>
> What does mpicxx -show return? It should be wrapping icpc.
>
> JTF
> ​
>
> On Mon, Jun 6, 2016 at 12:47 PM, Heroux, Mike <MHeroux at csbsju.edu> wrote:
>
>> It looks like you are compiling C++ with a C compiler.  This will not
>> work.
>>
>>
>>
>> Mike
>>
>>
>>
>> *From: *Trilinos-Users <trilinos-users-bounces at trilinos.org> on behalf
>> of Sai P Uppati <uppatis at utexas.edu>
>> *Date: *Monday, June 6, 2016 at 10:26 AM
>> *To: *"John T. Foster" <jfoster at austin.utexas.edu>
>> *Cc: *Roscoe Bartlett <rabartl at sandia.gov>, Trilinos Users <
>> trilinos-users at trilinos.org>
>> *Subject: *Re: [Trilinos-Users] [EXTERNAL] Trilinos Compilation Error on
>> Linux
>>
>>
>>
>> I didn't notice before I think, but I'm getting other errors as well,
>> besides the one I showed. Examples include:
>>
>>
>>
>> [  0%] Building C object
>> packages/seacas/libraries/chaco/CMakeFiles/chaco.dir/assign/assign_out.c.o
>>
>> In file included from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(53),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
>>
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_HostSpace.hpp(160):
>> *error*: invalid type for defaulted constructor
>>
>>     HostSpace( HostSpace && rhs ) = default ;
>>
>>     ^
>>
>>
>>
>> In file included from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(53),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
>>
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_HostSpace.hpp(162):
>> *error*: invalid type for defaulted assignment operator
>>
>>     HostSpace & operator = ( HostSpace && ) = default ;
>>
>>                 ^
>>
>>
>>
>> In file included from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/KokkosExp_View.hpp(55),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_View.hpp(2104),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Parallel.hpp(52),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Serial.hpp(52),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_Core.hpp(53),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/impl/KokkosExp_SharedAlloc.cpp(44):
>>
>> /home/de566876/source_codes/Trilinos/packages/kokkos/core/src/Kokkos_ExecPolicy.hpp(259):
>> *error*: invalid type for defaulted constructor
>>
>>     RangePolicy(RangePolicy&&) = default;
>>
>>     ^
>>
>>
>>
>> Is this also a compiler issue? The error with the netcdf.h with the
>> comment beginning with "//" is still there as well. Any idea what the
>> problem could be?
>>
>>
>>
>> Sai
>>
>>
>>
>>
>>
>> On Mon, Jun 6, 2016 at 9:25 AM, Sai P Uppati <uppatis at utexas.edu> wrote:
>>
>> Ross, sorry I misunderstood. John, thanks for that clarification. It
>> looks like I was using
>>
>>
>>
>> icc version 15.0.1 (gcc version 4.7.3 compatibility)
>>
>>
>>
>> And I changed to
>>
>>
>>
>> icc version 16.0.2 (gcc version 4.4.7 compatibility)
>>
>>
>>
>> Both of them are having the same issue.
>>
>>
>>
>> Sai
>>
>>
>>
>>
>>
>>
>>
>> On Mon, Jun 6, 2016 at 8:48 AM, John T. Foster <jfoster at austin.utexas.edu>
>> wrote:
>>
>> Sai,
>>
>> mpicc and mpicxx are just wrappers on the underlying compilers which are
>> most likely some version of gcc. You can see the full compiler and
>> linker command with mpicc -show. If the underlying compiler is in fact
>> gcc, you can see the version with gcc -v.
>>
>> JTF
>>
>> ​
>>
>>
>>
>> On Mon, Jun 6, 2016 at 8:20 AM, Sai P Uppati <uppatis at utexas.edu> wrote:
>>
>> Hi Ross,
>>
>>
>>
>> It looks like I'm using mpicc, mpicxx compilers from the OpemMPI 1.6.5
>> version. Are these too old for compiling the latest version of Trilinos?
>>
>>
>>
>> Sai
>>
>>
>>
>> On Sat, Jun 4, 2016 at 9:15 PM, Bartlett, Roscoe A <rabartl at sandia.gov>
>> wrote:
>>
>> Looks like your C compiler is not accepting C99 code.  C89 does not
>> accept // as a comment.  What C compiler are you using?
>>
>> -Ross
>> ------------------------------
>>
>> *From:* Trilinos-Users <trilinos-users-bounces at trilinos.org> on behalf
>> of Sai P Uppati <uppatis at utexas.edu>
>> *Sent:* Saturday, June 4, 2016 5:37:29 PM
>> *To:* trilinos-users at trilinos.org; trilinos-users at software.sandia.gov
>> *Subject:* [EXTERNAL] [Trilinos-Users] Trilinos Compilation Error on
>> Linux
>>
>>
>>
>> Hi,
>>
>>
>>
>> I'm trying to compile Trilinos (latest version: GitHub version) on a
>> Linux Red Hat distribution, and I'm getting a compilation error regarding
>> netcdf.h:
>>
>>
>>
>> Building C object
>> packages/seacas/libraries/supes/CMakeFiles/supes.dir/ext_lib/exmemy.c.o
>>
>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/src/ex_close.c(50):
>> warning #14: extra text after expected end of preprocessing directive
>>
>>   #include "exodusII.h"     // for ex_err, exerrval, etc
>>
>>                             ^
>>
>>
>>
>> In file included from
>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/include/exodusII.h(46),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/src/ex_add_attr.c(35):
>>
>> /home/de566876/projects/netcdf/include/netcdf.h(1951): error: expected a
>> declaration
>>
>>     //EXTERNL int nc_finalize();
>>
>>     ^
>>
>>
>>
>> [  5%] In file included from
>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/include/exodusII.h(46),
>>
>>                  from
>> /home/de566876/source_codes/Trilinos/packages/seacas/libraries/exodus/src/ex_close.c(50):
>>
>> /home/de566876/projects/netcdf/include/netcdf.h(1951): error: expected a
>> declaration
>>
>>     //EXTERNL int nc_finalize();
>>
>>     ^
>>
>>
>>
>> Does this error have to do with the netcdf build (version 4.4.0, which
>> passed all the tests in the test suite by the way)?
>>
>>
>>
>> Sincerely,
>>
>> Sai Uppati
>>
>>
>>
>>
>>
>> [image: mage removed by sender.]ᐧ
>>
>>
>>
>>
>>
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>>
>>
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>>
>>
>>
>>
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>
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