[Trilinos-Users] [EXTERNAL] stk undefined symbols issue for the Mac OS build

[Bradley, Andrew Michael]

Hi Zhekai,


Just to rule out the obvious: do you need STK in your installation? If not, you can turn it off with Trilinos_ENABLE_STK:BOOL=OFF.


Andrew


________________________________
From: Trilinos-Users <trilinos-users-bounces at trilinos.org> on behalf of Zhekai Deng <zhekaideng2014 at u.northwestern.edu>
Sent: Monday, December 12, 2016 7:29 PM
To: Bartlett, Roscoe A
Cc: trilinos-users at trilinos.org
Subject: Re: [Trilinos-Users] [EXTERNAL] stk undefined symbols issue for the Mac OS build

Thanks for the reply.

I need to use PyTrilinos, which required shared libs. It seems that this problem only occurs in Mac OS but not Linux. I am not sure if the workaround approach still work for the Trilinos build right now as those error are after implementation of manually changed DEPLIBS.

I will keep track on this issue, and probably go back to earlier release of Trilinos build to see I have any luck on those. Any other suggestion would be appreciated. Thank you.

Best,

Zhekai

On Mon, Dec 12, 2016 at 7:48 PM, Bartlett, Roscoe A <rabartl at sandia.gov<mailto:rabartl at sandia.gov>> wrote:
I saw this myself recently.  See:


*        https://github.com/trilinos/Trilinos/issues/482#issuecomment-260158990

I think the issue is that the main customer for STK never uses shared libs so this never gets tested with shared libs turned on.

Can you just build static libs?

-Ross

From: Trilinos-Users [mailto:trilinos-users-bounces at trilinos.org<mailto:trilinos-users-bounces at trilinos.org>] On Behalf Of Zhekai Deng
Sent: Monday, December 12, 2016 8:42 PM
To: trilinos-users at trilinos.org<mailto:trilinos-users at trilinos.org>
Subject: [EXTERNAL] [Trilinos-Users] stk undefined symbols issue for the Mac OS build

Hello all,

I have been trying build a Trilinos on Mac for a few days and have no luck on this. I have tried different Mac OS, and I am getting error listed below. There is an open issue on github seems also talking about this (https://github.com/trilinos/Trilinos/issues/62). I also got the exact the same exact error messages on issue 62 once in my own trial and error, but I lost the record for that. It appears all come down to the same "libstk_util_env.12.11.dylib". I don't use Albany, and just need access to Trilinos. So I implemented the workaround from github issue 62, but that did not resolve my issue ( the error below after I implement the work around on Github and still get error below). I have also attached my simple build configure file.

Could someone who have successful experience with the workaround approach on issue 62 shed some light on my problems ? Any ideas will be greatly appreciated! Thank you very much.

Best,

Zhekai


Undefined symbols for architecture x86_64:

  "boost::program_options::to_internal(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)", referenced from:

      boost::program_options::basic_parsed_options<char> boost::program_options::parse_command_line<char>(int, char const* const*, boost::program_options::options_description const&, int, boost::function1<std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&>) in Env.cpp.o

  "boost::program_options::detail::cmdline::set_additional_parser(boost::function1<std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&>)", referenced from:

      boost::program_options::basic_parsed_options<char> boost::program_options::parse_command_line<char>(int, char const* const*, boost::program_options::options_description const&, int, boost::function1<std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&>) in Env.cpp.o

  "boost::program_options::detail::cmdline::cmdline(std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)", referenced from:

      boost::program_options::basic_parsed_options<char> boost::program_options::parse_command_line<char>(int, char const* const*, boost::program_options::options_description const&, int, boost::function1<std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&>) in Env.cpp.o

  "boost::program_options::abstract_variables_map::operator[](std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const", referenced from:

      sierra::Env::get_param(char const*) in Env.cpp.o

ld: symbol(s) not found for architecture x86_64

collect2: error: ld returned 1 exit status

make[2]: *** [packages/stk/stk_util/stk_util/environment/libstk_util_env.12.11.dylib] Error 1

make[1]: *** [packages/stk/stk_util/stk_util/environment/CMakeFiles/stk_util_env.dir/all] Error 2

make: *** [all] Error 2

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