[Trilinos-Users] 12.6.1 build error

[Victor Eijkhout]

My script is essentially unchanged from 12.2.

/opt/apps/intel15/mvapich2/2.1/bin/mpicxx   -O1 -mkl -DMPICH_SKIP_MPICXX -std=c++11 -O3 -DNDEBUG   CMakeFiles/STKSearch_search_unit_tests.dir/UnitTestCoarse
SearchBoostImpl.cpp.o CMakeFiles/STKSearch_search_unit_tests.dir/UnitTestIdentProc.cpp.o CMakeFiles/STKSearch_search_unit_tests.dir/UnitTestOctTree.cpp.o CM
akeFiles/STKSearch_search_unit_tests.dir/UnitTestMain.cpp.o CMakeFiles/STKSearch_search_unit_tests.dir/UnitTestBoundingBox.cpp.o  -o STKSearch_search_unit_t
ests.exe -rdynamic ../stk_search/libstk_search.so.12.6.1 ../../stk_unit_test_utils/libstk_unit_test_utils.so.12.6.1 ../../../../commonTools/gtest/libgtest.s
o.12.6.1 ../../../ThreadPool/src/libtpi.so.12.6.1 ../../stk_io/stk_io/util/libstk_io_util.so.12.6.1 ../../stk_io/stk_io/libstk_io.so.12.6.1 ../../stk_mesh/s
tk_mesh/base/libstk_mesh_base.so.12.6.1 ../../stk_topology/stk_topology/libstk_topology.so.12.6.1 ../../stk_util/stk_util/use_cases/libstk_util_use_cases.so
.12.6.1 ../../stk_util/stk_util/registry/libstk_util_registry.so.12.6.1 ../../stk_util/stk_util/diag/libstk_util_diag.so.12.6.1 ../../stk_util/stk_util/envi
ronment/libstk_util_env.so.12.6.1 ../../stk_util/stk_util/util/libstk_util_util.so.12.6.1 ../../../seacas/libraries/aprepro_lib/libaprepro_lib.so.12.6.1 /op
t/apps/intel15/boost/1.55.0/x86_64/lib/libboost_program_options.so /opt/apps/intel15/boost/1.55.0/x86_64/lib/libboost_system.so ../../../shards/src/libshard
s.so.12.6.1 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread ../../../seacas/libraries/ioss/src/init/libIonit.so.12.6.1 ../../../seacas/libraries/ioss
/src/transform/libIotr.so.12.6.1 ../../../seacas/libraries/ioss/src/heartbeat/libIohb.so.12.6.1 ../../../seacas/libraries/ioss/src/generated/libIogn.so.12.6
.1 ../../../seacas/libraries/ioss/src/pamgen/libIopg.so.12.6.1 ../../../seacas/libraries/ioss/src/exo_fac/libIoexo_fac.so.12.6.1 ../../../seacas/libraries/i
oss/src/exo_par/libIopx.so.12.6.1 ../../../seacas/libraries/ioss/src/exo_fpp/libIofx.so.12.6.1 ../../../seacas/libraries/ioss/src/exodus/libIoex.so.12.6.1 .
./../../seacas/libraries/ioss/src/libIoss.so.12.6.1 ../../../seacas/libraries/exodus/cbind/libexodus.so.12.6.1 /opt/apps/intel15/mvapich2_2_1/parallel-netcd
f/4.3.3.1/x86_64/lib/libnetcdf.so ../../../pamgen/src/libpamgen_extras.so.12.6.1 ../../../pamgen/src/libpamgen.so.12.6.1 ../../../zoltan/src/libzoltan.so.12
.6.1 -lm /opt/apps/intel15/mvapich2_2_1/phdf5/1.8.16/x86_64/lib/libhdf5.so -lz ../../../teuchos/core/src/libteuchoscore.so.12.6.1 ../../../kokkos/core/src/l
ibkokkoscore.so.12.6.1 -Wl,-rpath,/tmp/trilinos-build/packages/stk/stk_search/stk_search:/tmp/trilinos-build/packages/stk/stk_unit_test_utils:/tmp/trilinos-
build/commonTools/gtest:/tmp/trilinos-build/packages/ThreadPool/src:/tmp/trilinos-build/packages/stk/stk_io/stk_io/util:/tmp/trilinos-build/packages/stk/stk
_io/stk_io:/tmp/trilinos-build/packages/stk/stk_mesh/stk_mesh/base:/tmp/trilinos-build/packages/stk/stk_topology/stk_topology:/tmp/trilinos-build/packages/s
tk/stk_util/stk_util/use_cases:/tmp/trilinos-build/packages/stk/stk_util/stk_util/registry:/tmp/trilinos-build/packages/stk/stk_util/stk_util/diag:/tmp/tril
inos-build/packages/stk/stk_util/stk_util/environment:/tmp/trilinos-build/packages/stk/stk_util/stk_util/util:/tmp/trilinos-build/packages/seacas/libraries/
aprepro_lib:/opt/apps/intel15/boost/1.55.0/x86_64/lib:/tmp/trilinos-build/packages/shards/src:/tmp/trilinos-build/packages/seacas/libraries/ioss/src/init:/t
mp/trilinos-build/packages/seacas/libraries/ioss/src/transform:/tmp/trilinos-build/packages/seacas/libraries/ioss/src/heartbeat:/tmp/trilinos-build/packages
/seacas/libraries/ioss/src/generated:/tmp/trilinos-build/packages/seacas/libraries/ioss/src/pamgen:/tmp/trilinos-build/packages/seacas/libraries/ioss/src/ex
o_fac:/tmp/trilinos-build/packages/seacas/libraries/ioss/src/exo_par:/tmp/trilinos-build/packages/seacas/libraries/ioss/src/exo_fpp:/tmp/trilinos-build/pack
ages/seacas/libraries/ioss/src/exodus:/tmp/trilinos-build/packages/seacas/libraries/ioss/src:/tmp/trilinos-build/packages/seacas/libraries/exodus/cbind:/opt
/apps/intel15/mvapich2_2_1/parallel-netcdf/4.3.3.1/x86_64/lib:/tmp/trilinos-build/packages/pamgen/src:/tmp/trilinos-build/packages/zoltan/src:/opt/apps/inte
l15/mvapich2_2_1/phdf5/1.8.16/x86_64/lib:/tmp/trilinos-build/packages/teuchos/core/src:/tmp/trilinos-build/packages/kokkos/core/src
CMakeFiles/STKSearch_search_unit_tests.dir/UnitTestCoarseSearchBoostImpl.cpp.o: In function `(anonymous namespace)::stk_search_boost_global_spatial_index_Te
st::TestBody()':
/admin/build/admin/rpms/stampede/BUILD/trilinos-12.6.1/packages/stk/stk_search/unit_tests/UnitTestCoarseSearchBoostImpl.cpp:(.text+0x17): undefined reference to `stk::parallel_machine_size(int)'
/admin/build/admin/rpms/stampede/BUILD/trilinos-12.6.1/packages/stk/stk_search/unit_tests/UnitTestCoarseSearchBoostImpl.cpp:(.text+0x2e): undefined reference to `stk::parallel_machine_rank(int)'
/admin/build/admin/rpms/stampede/BUILD/trilinos-12.6.1/packages/stk/stk_search/unit_tests/UnitTestCoarseSearchBoostImpl.cpp:(.text+0x170): undefined reference to `stk::parallel_machine_size(int)’

and a bunch more.

The cmake stage seems to have completed without any problem. Let me know what log files and such I can ship to you.

Victor.

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