[Trilinos-Users] [EXTERNAL] error configuring trilinos
Irena Johnson
ijohnson at pppl.gov
Fri Oct 23 08:37:10 EDT 2015
Is it possible to build trilinos with Intel compiler 2015, using a
non-native gcc-4.9.1 ?
Thank you
Irena
On Fri, Oct 16, 2015 at 11:58 AM, Irena Johnson <ijohnson at pppl.gov> wrote:
> Dear Trilinos Support,
>
> I am getting errors (pasted below) while trying to build trilinos with
> Intel 2015.u1 and using non-native gcc-4.9.1 on a rhel 6 system.
> I have attached the configuration script. Please advise. Thank you,
> Irena
>
>
> *[100%] Linking CXX executable VerifyFortranC*
> * /usr/pppl/cmake/3.4.0-rc1/bin/cmake -E cmake_link_script
> CMakeFiles/VerifyFortranC.dir/link.txt --verbose=1*
> * /usr/pppl/intel/2015.u1/bin/icpc -O2 -std=c++11 -ggdb
> -Wno-sign-compare -O3 -DNDEBUG CMakeFiles/VerifyFortranC.dir/main.c.o
> CMakeFiles/VerifyFortranC.dir/VerifyC.c.o
> CMakeFiles/VerifyFortranC.dir/VerifyCXX.cxx.o -o VerifyFortranC
> libVerifyFortran.a -lifport -lifcore -lpthread *
> * ld: warning: libimf.so, needed by
> /usr/pppl/intel/2015.u1/composer_xe_2015.1.133/compiler/lib/intel64/libifport.so.5,
> not found (try using -rpath or -rpath-link)*
> * ld: warning: libintlc.so.5, needed by
> /usr/pppl/intel/2015.u1/composer_xe_2015.1.133/compiler/lib/intel64/libifport.so.5,
> not found (try using -rpath or -rpath-link)*
> * CMakeFiles/VerifyFortranC.dir/main.c.o: In function `main':*
> *
> /usr/pppl/cmake/3.4.0-rc1/share/cmake-3.4/Modules/FortranCInterface/Verify/main.c:14:
> undefined reference to `VerifyFortran'*
> * gmake[2]: *** [VerifyFortranC] Error 1*
> * gmake[2]: Leaving directory
> `/pfs/tmp/ijohnson/trilinos-12.2.1-Source/build/CMakeFiles/FortranCInterface/VerifyCXX'*
> * gmake[1]: *** [CMakeFiles/VerifyFortranC.dir/all] Error 2*
> * gmake[1]: Leaving directory
> `/pfs/tmp/ijohnson/trilinos-12.2.1-Source/build/CMakeFiles/FortranCInterface/VerifyCXX'*
> * gmake: *** [all] Error 2*
>
> *Call Stack (most recent call first):*
> * cmake/tribits/core/package_arch/TribitsFortranMangling.cmake:50
> (FortranCInterface_VERIFY)*
> * cmake/tribits/core/package_arch/TribitsGlobalMacros.cmake:1713
> (INCLUDE)*
> * cmake/tribits/core/package_arch/TribitsProjectImpl.cmake:188
> (TRIBITS_SETUP_ENV)*
> * cmake/tribits/core/package_arch/TribitsProject.cmake:93
> (TRIBITS_PROJECT_IMPL)*
> * CMakeLists.txt:89 (TRIBITS_PROJECT)*
>
>
> *-- Configuring incomplete, errors occurred!*
>
>
> On Wed, Oct 14, 2015 at 11:35 AM, Irena Johnson <ijohnson at pppl.gov> wrote:
>
>> Hi Andrey,
>>
>> Our users need trilinos to be built under Intel 2015.u1. I understand
>> that in order to build trilinos, you need at least gcc/4.7.2 , and on RHEL
>> 6, the native gcc compiler is 4.4.7.
>>
>> I have attached the confiugration script to this email.
>>
>>
>>
>> $ module li
>> Currently Loaded Modulefiles:
>> 1) slurm/14.11.1 3) bbcp/10.08.29.00.0 5) gcc4/4.9.1
>> 2) ppplcluster/1.2 4) cmake/3.4.0-rc1
>>
>> echo $INCLUDE_PATH
>> /usr/pppl/gcc/4.9.1/include:/usr/pppl/slurm/14.03.5/include
>>
>> echo $LD_LIBRARY_PATH
>>
>> /usr/pppl/gcc/4.9.1/lib64:/usr/pppl/mpc/1.0.2/lib:/usr/pppl/mpfr/3.1.2/lib:/usr/pppl/gmp/6.0.0a/lib:/usr/pppl/slurm/14.11.1/lib
>>
>>
>> Thanks,
>> --
>> Irena
>>
>> On Wed, Oct 14, 2015 at 10:47 AM, Andrey Prokopenko <aprokop at sandia.gov>
>> wrote:
>>
>>> Hi Irena,
>>>
>>> If you are building with gcc, why does it use intel (icpc) to compile
>>> the code? It's hard to say what's going on without more details. Could you
>>> please attach your configuration script and environment?
>>>
>>> -Andrey
>>>
>>>
>>> On 10/14/2015 08:20 AM, Irena Johnson wrote:
>>>
>>> Hello,
>>>
>>> I am building trilinos-12.2.1 on a RHEL 6 system, with
>>> non-native gcc4/4.9.1
>>>
>>> Could you advise what I am missing from the configuration. I have
>>> attached the configuration script.
>>>
>>> The error I am getting is:
>>>
>>>
>>> [100%] Linking CXX executable VerifyFortranC
>>> /usr/pppl/cmake/3.4.0-rc1/bin/cmake -E cmake_link_script
>>> CMakeFiles/VerifyFortranC.dir/link.txt --verbose=1
>>> /usr/pppl/intel/2015.u1/bin/icpc -O2 -std=c++11 -ggdb
>>> -Wno-sign-compare -O3 -DNDEBUG CMakeFiles/VerifyFortranC.dir/main.c.o
>>> CMakeFiles/VerifyFortranC.dir/VerifyC.c.o
>>> CMakeFiles/VerifyFortranC.dir/VerifyCXX.cxx.o -o VerifyFortranC
>>> libVerifyFortran.a -lifport -lifcore -lpthread
>>> ld: warning: libimf.so, needed by
>>> /usr/pppl/intel/2015.u1/composer_xe_2015.1.133/compiler/lib/intel64/libifport.so.5,
>>> not found (try using -rpath or -rpath-link)
>>> ld: warning: libintlc.so.5, needed by
>>> /usr/pppl/intel/2015.u1/composer_xe_2015.1.133/compiler/lib/intel64/libifport.so.5,
>>> not found (try using -rpath or -rpath-link)
>>> CMakeFiles/VerifyFortranC.dir/main.c.o: In function `main':
>>>
>>> /usr/pppl/cmake/3.4.0-rc1/share/cmake-3.4/Modules/FortranCInterface/Verify/main.c:14:
>>> undefined reference to `VerifyFortran'
>>> gmake[2]: *** [VerifyFortranC] Error 1
>>> gmake[2]: Leaving directory
>>> `/pfs/tmp/ijohnson/trilinos-12.2.1-Source/build/CMakeFiles/FortranCInterface/VerifyCXX'
>>> gmake[1]: *** [CMakeFiles/VerifyFortranC.dir/all] Error 2
>>> gmake[1]: Leaving directory
>>> `/pfs/tmp/ijohnson/trilinos-12.2.1-Source/build/CMakeFiles/FortranCInterface/VerifyCXX'
>>> gmake: *** [all] Error 2
>>>
>>> Call Stack (most recent call first):
>>> cmake/tribits/core/package_arch/TribitsFortranMangling.cmake:50
>>> (FortranCInterface_VERIFY)
>>> cmake/tribits/core/package_arch/TribitsGlobalMacros.cmake:1713
>>> (INCLUDE)
>>> cmake/tribits/core/package_arch/TribitsProjectImpl.cmake:188
>>> (TRIBITS_SETUP_ENV)
>>> cmake/tribits/core/package_arch/TribitsProject.cmake:93
>>> (TRIBITS_PROJECT_IMPL)
>>> CMakeLists.txt:89 (TRIBITS_PROJECT)
>>>
>>>
>>> -- Configuring incomplete, errors occurred!
>>>
>>>
>>>
>>>
>>>
>>> --
>>> Irena
>>>
>>>
>>> _______________________________________________
>>> Trilinos-Users mailing listTrilinos-Users at trilinos.orghttps://trilinos.org/mailman/listinfo/trilinos-users
>>>
>>>
>>>
>>
>>
>>
>>
>
>
> --
> Irena
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://trilinos.org/pipermail/trilinos-users/attachments/20151023/13547809/attachment.html>
More information about the Trilinos-Users
mailing list