[Trilinos-Users] [EXTERNAL] Re: Compiling and Linking Errors with Intel

Thu May 21 16:40:53 EDT 2015

Is this a CMake variable I should be manipulating or an environment
variable, and if so, which one?

On Thu, May 21, 2015 at 3:15 PM Phipps, Eric T <etphipp at sandia.gov> wrote:

>  No, this would be from your include path, not LD_LIBRARY_PATH.
>
>  -Eric
>
>   From: Truman Ellis <truman.e.ellis at gmail.com>
> Date: Thursday, May 21, 2015 at 2:06 PM
>
> To: Eric Phipps <etphipp at sandia.gov>, "Bartlett, Roscoe A." <
> bartlettra at ornl.gov>, "trilinos-users at trilinos.org" <
> trilinos-users at trilinos.org>
> Subject: Re: [EXTERNAL] Re: [Trilinos-Users] Compiling and Linking Errors
> with Intel
>
>   I tried clearing my $LD_LIBRARY_PATH before building my application,
> but I still get these warnings. Is there a different approach I should be
> using?
>
> On Thu, May 21, 2015 at 2:58 PM Phipps, Eric T <etphipp at sandia.gov> wrote:
>
>>  But it appears to be pulling in ML through Petsc instead of through
>> Trilinos, e.g.,:
>>
>>  /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_config.h(25):
>> warning #47: incompatible redefinition of macro "HAVE_BLAS" (declared at
>> line 70 of "/work/01837/truman/trilinosRelease/lib/cm
>> ake/Trilinos/../../../include/Epetra_config.h”)
>>
>>   You probably need to get Petsc out of your include path.  The Petsc
>> version of ML probably is old and doesn’t have the MultiLevelPreconditioner
>> class.
>>
>>  -Eric
>>
>>   From: Truman Ellis <truman.e.ellis at gmail.com>
>> Date: Thursday, May 21, 2015 at 1:52 PM
>>
>> To: Eric Phipps <etphipp at sandia.gov>, "Bartlett, Roscoe A." <
>> bartlettra at ornl.gov>, "trilinos-users at trilinos.org" <
>> trilinos-users at trilinos.org>
>> Subject: Re: [EXTERNAL] Re: [Trilinos-Users] Compiling and Linking
>> Errors with Intel
>>
>>   Our code doesn't use Petsc, I believe those petsc references in the
>> directory paths are just where the TACC admins store the various module
>> files for this system.
>>
>> On Thu, May 21, 2015 at 2:47 PM Phipps, Eric T <etphipp at sandia.gov>
>> wrote:
>>
>>>  Are you trying to link in ML both through Trilinos and Petsc?  That is
>>> unlikely to work.  Do they even have the same version of ML?
>>>
>>>  -Eric
>>>
>>>   From: Truman Ellis <truman.e.ellis at gmail.com>
>>> Date: Thursday, May 21, 2015 at 12:39 PM
>>> To: Eric Phipps <etphipp at sandia.gov>, "Bartlett, Roscoe A." <
>>> bartlettra at ornl.gov>, "trilinos-users at trilinos.org" <
>>> trilinos-users at trilinos.org>
>>> Subject: Re: [EXTERNAL] Re: [Trilinos-Users] Compiling and Linking
>>> Errors with Intel
>>>
>>>   That seems to have moved things forward somewhat, but now I am
>>> getting a different set of link warnings/errors, pasted below. The error
>>> stems from a complaint that the ML_Epetra namespace doesn't contain a MultiLevelPreconditioner
>>> member. For context, my source file that generates this error has the
>>> following #includes:
>>> #include "ml_include.h"
>>> #include "ml_MultiLevelPreconditioner.h"
>>> #include "ml_epetra_utils.h"
>>>
>>>  When I open up the installed ml_MultiLevelPreconditioner.h file, I
>>> definitely see a definition for class MultiLevelPreconditioner.
>>>
>>> In file included from
>>> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_common.h(56),
>>>                  from
>>> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_include.h(16),
>>>                  from
>>> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(13),
>>>                  from
>>> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
>>> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_config.h(25):
>>> warning #47: incompatible redefinition of macro "HAVE_BLAS" (declared at
>>> line 70 of "/work/01837/truman/trilinosRelease/lib/cm
>>> ake/Trilinos/../../../include/Epetra_config.h")
>>>   #define HAVE_BLAS 1
>>>           ^
>>>
>>>  In file included from
>>> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_common.h(56),
>>>                  from
>>> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_include.h(16),
>>>                  from
>>> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(13),
>>>                  from
>>> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
>>> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_config.h(67):
>>> warning #47: incompatible redefinition of macro "HAVE_LAPACK" (declared at
>>> line 105 of "/work/01837/truman/trilinosRelease/lib
>>> /cmake/Trilinos/../../../include/Epetra_config.h")
>>>   #define HAVE_LAPACK 1
>>>           ^
>>>
>>>  In file included from
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_ConfigDefs.h(83),
>>>                  from
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO.h(48),
>>>                  from
>>> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(18),
>>>                  from
>>> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_config.h(41):
>>> warning #47: incompatible redefinition of macro "HAVE_BLAS" (declared at
>>> line 25 of "/opt/apps/intel15/mvapich2
>>> _2_1/petsc/3.5/sandybridge/include/ml_config.h")
>>>   #define HAVE_BLAS
>>>           ^
>>>
>>>  In file included from
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_ConfigDefs.h(83),
>>>                  from
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO.h(48),
>>>                  from
>>> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(18),
>>>                  from
>>> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_config.h(71):
>>> warning #47: incompatible redefinition of macro "HAVE_LAPACK" (declared at
>>> line 67 of "/opt/apps/intel15/mvapic
>>> h2_2_1/petsc/3.5/sandybridge/include/ml_config.h")
>>>   #define HAVE_LAPACK
>>>           ^
>>>
>>>  In file included from
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_ConfigDefs.h(83),
>>>                  from
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO.h(48),
>>>                  from
>>> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(18),
>>>                  from
>>> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_config.h(120):
>>> warning #47: incompatible redefinition of macro "HAVE_STRING" (declared at
>>> line 209 of "/opt/apps/intel15/mvap
>>> ich2_2_1/petsc/3.5/sandybridge/include/ml_config.h")
>>>   #define HAVE_STRING
>>>           ^
>>>
>>>  In file included from
>>> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
>>> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(26): error:
>>> namespace "ML_Epetra" has no member "MultiLevelPreconditioner"
>>>           Teuchos::RCP< ML_Epetra::MultiLevelPreconditioner >
>>> _savedPreconditioner;
>>>
>>> On Thu, May 21, 2015 at 12:16 PM Phipps, Eric T <etphipp at sandia.gov>
>>> wrote:
>>>
>>>>  -D Trilinos_ENABLE_CXX11=ON
>>>>
>>>>  -Eric
>>>>
>>>>   From: Truman Ellis <truman.e.ellis at gmail.com>
>>>> Date: Thursday, May 21, 2015 at 11:10 AM
>>>> To: "Bartlett, Roscoe A." <bartlettra at ornl.gov>, "
>>>> trilinos-users at trilinos.org" <trilinos-users at trilinos.org>
>>>> Subject: [EXTERNAL] Re: [Trilinos-Users] Compiling and Linking Errors
>>>> with Intel
>>>>
>>>>   Is there a shortcut to enable C++11 support for all packages, or do
>>>> I need a line like that for every project I want to build?
>>>>
>>>> On Thu, May 21, 2015 at 12:08 PM Bartlett, Roscoe A. <
>>>> bartlettra at ornl.gov> wrote:
>>>>
>>>>>  Truman,
>>>>>
>>>>>
>>>>>
>>>>> Instructions for turning on C++11 support is described here:
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> https://tribits.org/doc/TribitsBuildReference.html#enabling-support-for-c-11
>>>>>
>>>>>
>>>>>
>>>>> The variable CMAKE_CXX_STANDARD was not present in CMake 2.8.11:
>>>>>
>>>>>
>>>>>
>>>>>        http://www.cmake.org/cmake/help/v2.8.11/cmake.html
>>>>>
>>>>>
>>>>>
>>>>> and therefore we can’t use it.  We have to maintain backward
>>>>> compatibility to CMake 2.8.11, at least for now.
>>>>>
>>>>>
>>>>>
>>>>> -Ross
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> *From:* Trilinos-Users [mailto:trilinos-users-bounces at trilinos.org] *On
>>>>> Behalf Of *Truman Ellis
>>>>> *Sent:* Thursday, May 21, 2015 12:48 PM
>>>>> *To:* trilinos-users at trilinos.org
>>>>> *Subject:* [Trilinos-Users] Compiling and Linking Errors with Intel
>>>>>
>>>>>
>>>>>
>>>>> I downloaded Trilinos 12.0.1 and compiled it with intel compilers on
>>>>> TACC's Stampede supercomputer. However, when I try to link to it from my
>>>>> application, I get a bunch of errors similar to
>>>>>
>>>>> In file included from
>>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Kokkos_View.hpp(56),
>>>>>
>>>>>                  from
>>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Kokkos_Parallel.hpp(52),
>>>>>
>>>>>                  from
>>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Kokkos_Serial.hpp(52),
>>>>>
>>>>>                  from
>>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Kokkos_Core.hpp(61),
>>>>>
>>>>>                  from
>>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/KokkosRank.hpp(4),
>>>>>
>>>>>                  from
>>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Intrepid_ArrayTools.hpp(57),
>>>>>
>>>>>                  from
>>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Intrepid_FunctionSpaceTools.hpp(53),
>>>>>
>>>>>                  from
>>>>> /work/01837/truman/Camellia/src/ScratchPad/IP.cpp(9):
>>>>>
>>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/impl/Kokkos_ViewOffset.hpp(1215):
>>>>> error: namespace "std" has no member "enable_if"
>>>>>
>>>>>     typename std::enable_if< (std::is_integral<I0>::value) &&
>>>>> (shape_type::rank==1),size_type>::type
>>>>>
>>>>>
>>>>>
>>>>> I've made sure my do-configure scripts for both Trilinos and my own
>>>>> application include a line
>>>>>
>>>>> -D CMAKE_CXX_STANDARD:STRING="11" \
>>>>>
>>>>> in order to guarantee compilation with C++11. Any advice on how to fix
>>>>> this?
>>>>>
>>>>
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