[Trilinos-Users] [EXTERNAL] Re: Compiling and Linking Errors with Intel

Thu May 21 16:06:31 EDT 2015

I tried clearing my $LD_LIBRARY_PATH before building my application, but I
still get these warnings. Is there a different approach I should be using?

On Thu, May 21, 2015 at 2:58 PM Phipps, Eric T <etphipp at sandia.gov> wrote:

>  But it appears to be pulling in ML through Petsc instead of through
> Trilinos, e.g.,:
>
>  /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_config.h(25):
> warning #47: incompatible redefinition of macro "HAVE_BLAS" (declared at
> line 70 of "/work/01837/truman/trilinosRelease/lib/cm
> ake/Trilinos/../../../include/Epetra_config.h”)
>
>  You probably need to get Petsc out of your include path.  The Petsc
> version of ML probably is old and doesn’t have the MultiLevelPreconditioner
> class.
>
>  -Eric
>
>   From: Truman Ellis <truman.e.ellis at gmail.com>
> Date: Thursday, May 21, 2015 at 1:52 PM
>
> To: Eric Phipps <etphipp at sandia.gov>, "Bartlett, Roscoe A." <
> bartlettra at ornl.gov>, "trilinos-users at trilinos.org" <
> trilinos-users at trilinos.org>
> Subject: Re: [EXTERNAL] Re: [Trilinos-Users] Compiling and Linking Errors
> with Intel
>
>   Our code doesn't use Petsc, I believe those petsc references in the
> directory paths are just where the TACC admins store the various module
> files for this system.
>
> On Thu, May 21, 2015 at 2:47 PM Phipps, Eric T <etphipp at sandia.gov> wrote:
>
>>  Are you trying to link in ML both through Trilinos and Petsc?  That is
>> unlikely to work.  Do they even have the same version of ML?
>>
>>  -Eric
>>
>>   From: Truman Ellis <truman.e.ellis at gmail.com>
>> Date: Thursday, May 21, 2015 at 12:39 PM
>> To: Eric Phipps <etphipp at sandia.gov>, "Bartlett, Roscoe A." <
>> bartlettra at ornl.gov>, "trilinos-users at trilinos.org" <
>> trilinos-users at trilinos.org>
>> Subject: Re: [EXTERNAL] Re: [Trilinos-Users] Compiling and Linking
>> Errors with Intel
>>
>>   That seems to have moved things forward somewhat, but now I am getting
>> a different set of link warnings/errors, pasted below. The error stems from
>> a complaint that the ML_Epetra namespace doesn't contain a MultiLevelPreconditioner
>> member. For context, my source file that generates this error has the
>> following #includes:
>> #include "ml_include.h"
>> #include "ml_MultiLevelPreconditioner.h"
>> #include "ml_epetra_utils.h"
>>
>>  When I open up the installed ml_MultiLevelPreconditioner.h file, I
>> definitely see a definition for class MultiLevelPreconditioner.
>>
>> In file included from
>> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_common.h(56),
>>                  from
>> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_include.h(16),
>>                  from
>> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(13),
>>                  from
>> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
>> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_config.h(25):
>> warning #47: incompatible redefinition of macro "HAVE_BLAS" (declared at
>> line 70 of "/work/01837/truman/trilinosRelease/lib/cm
>> ake/Trilinos/../../../include/Epetra_config.h")
>>   #define HAVE_BLAS 1
>>           ^
>>
>>  In file included from
>> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_common.h(56),
>>                  from
>> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_include.h(16),
>>                  from
>> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(13),
>>                  from
>> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
>> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_config.h(67):
>> warning #47: incompatible redefinition of macro "HAVE_LAPACK" (declared at
>> line 105 of "/work/01837/truman/trilinosRelease/lib
>> /cmake/Trilinos/../../../include/Epetra_config.h")
>>   #define HAVE_LAPACK 1
>>           ^
>>
>>  In file included from
>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_ConfigDefs.h(83),
>>                  from
>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO.h(48),
>>                  from
>> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(18),
>>                  from
>> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_config.h(41):
>> warning #47: incompatible redefinition of macro "HAVE_BLAS" (declared at
>> line 25 of "/opt/apps/intel15/mvapich2
>> _2_1/petsc/3.5/sandybridge/include/ml_config.h")
>>   #define HAVE_BLAS
>>           ^
>>
>>  In file included from
>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_ConfigDefs.h(83),
>>                  from
>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO.h(48),
>>                  from
>> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(18),
>>                  from
>> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_config.h(71):
>> warning #47: incompatible redefinition of macro "HAVE_LAPACK" (declared at
>> line 67 of "/opt/apps/intel15/mvapic
>> h2_2_1/petsc/3.5/sandybridge/include/ml_config.h")
>>   #define HAVE_LAPACK
>>           ^
>>
>>  In file included from
>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_ConfigDefs.h(83),
>>                  from
>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO.h(48),
>>                  from
>> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(18),
>>                  from
>> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_config.h(120):
>> warning #47: incompatible redefinition of macro "HAVE_STRING" (declared at
>> line 209 of "/opt/apps/intel15/mvap
>> ich2_2_1/petsc/3.5/sandybridge/include/ml_config.h")
>>   #define HAVE_STRING
>>           ^
>>
>>  In file included from
>> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
>> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(26): error:
>> namespace "ML_Epetra" has no member "MultiLevelPreconditioner"
>>           Teuchos::RCP< ML_Epetra::MultiLevelPreconditioner >
>> _savedPreconditioner;
>>
>> On Thu, May 21, 2015 at 12:16 PM Phipps, Eric T <etphipp at sandia.gov>
>> wrote:
>>
>>>  -D Trilinos_ENABLE_CXX11=ON
>>>
>>>  -Eric
>>>
>>>   From: Truman Ellis <truman.e.ellis at gmail.com>
>>> Date: Thursday, May 21, 2015 at 11:10 AM
>>> To: "Bartlett, Roscoe A." <bartlettra at ornl.gov>, "
>>> trilinos-users at trilinos.org" <trilinos-users at trilinos.org>
>>> Subject: [EXTERNAL] Re: [Trilinos-Users] Compiling and Linking Errors
>>> with Intel
>>>
>>>   Is there a shortcut to enable C++11 support for all packages, or do I
>>> need a line like that for every project I want to build?
>>>
>>> On Thu, May 21, 2015 at 12:08 PM Bartlett, Roscoe A. <
>>> bartlettra at ornl.gov> wrote:
>>>
>>>>  Truman,
>>>>
>>>>
>>>>
>>>> Instructions for turning on C++11 support is described here:
>>>>
>>>>
>>>>
>>>>
>>>> https://tribits.org/doc/TribitsBuildReference.html#enabling-support-for-c-11
>>>>
>>>>
>>>>
>>>> The variable CMAKE_CXX_STANDARD was not present in CMake 2.8.11:
>>>>
>>>>
>>>>
>>>>        http://www.cmake.org/cmake/help/v2.8.11/cmake.html
>>>>
>>>>
>>>>
>>>> and therefore we can’t use it.  We have to maintain backward
>>>> compatibility to CMake 2.8.11, at least for now.
>>>>
>>>>
>>>>
>>>> -Ross
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> *From:* Trilinos-Users [mailto:trilinos-users-bounces at trilinos.org] *On
>>>> Behalf Of *Truman Ellis
>>>> *Sent:* Thursday, May 21, 2015 12:48 PM
>>>> *To:* trilinos-users at trilinos.org
>>>> *Subject:* [Trilinos-Users] Compiling and Linking Errors with Intel
>>>>
>>>>
>>>>
>>>> I downloaded Trilinos 12.0.1 and compiled it with intel compilers on
>>>> TACC's Stampede supercomputer. However, when I try to link to it from my
>>>> application, I get a bunch of errors similar to
>>>>
>>>> In file included from
>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Kokkos_View.hpp(56),
>>>>
>>>>                  from
>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Kokkos_Parallel.hpp(52),
>>>>
>>>>                  from
>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Kokkos_Serial.hpp(52),
>>>>
>>>>                  from
>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Kokkos_Core.hpp(61),
>>>>
>>>>                  from
>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/KokkosRank.hpp(4),
>>>>
>>>>                  from
>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Intrepid_ArrayTools.hpp(57),
>>>>
>>>>                  from
>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Intrepid_FunctionSpaceTools.hpp(53),
>>>>
>>>>                  from
>>>> /work/01837/truman/Camellia/src/ScratchPad/IP.cpp(9):
>>>>
>>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/impl/Kokkos_ViewOffset.hpp(1215):
>>>> error: namespace "std" has no member "enable_if"
>>>>
>>>>     typename std::enable_if< (std::is_integral<I0>::value) &&
>>>> (shape_type::rank==1),size_type>::type
>>>>
>>>>
>>>>
>>>> I've made sure my do-configure scripts for both Trilinos and my own
>>>> application include a line
>>>>
>>>> -D CMAKE_CXX_STANDARD:STRING="11" \
>>>>
>>>> in order to guarantee compilation with C++11. Any advice on how to fix
>>>> this?
>>>>
>>>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://trilinos.org/pipermail/trilinos-users/attachments/20150521/9c74b35a/attachment-0001.html>