[Trilinos-Users] [EXTERNAL] Re: Compiling and Linking Errors with Intel

Truman Ellis truman.e.ellis at gmail.com
Thu May 21 15:52:07 EDT 2015


Our code doesn't use Petsc, I believe those petsc references in the
directory paths are just where the TACC admins store the various module
files for this system.

On Thu, May 21, 2015 at 2:47 PM Phipps, Eric T <etphipp at sandia.gov> wrote:

>  Are you trying to link in ML both through Trilinos and Petsc?  That is
> unlikely to work.  Do they even have the same version of ML?
>
>  -Eric
>
>   From: Truman Ellis <truman.e.ellis at gmail.com>
> Date: Thursday, May 21, 2015 at 12:39 PM
> To: Eric Phipps <etphipp at sandia.gov>, "Bartlett, Roscoe A." <
> bartlettra at ornl.gov>, "trilinos-users at trilinos.org" <
> trilinos-users at trilinos.org>
> Subject: Re: [EXTERNAL] Re: [Trilinos-Users] Compiling and Linking Errors
> with Intel
>
>   That seems to have moved things forward somewhat, but now I am getting
> a different set of link warnings/errors, pasted below. The error stems from
> a complaint that the ML_Epetra namespace doesn't contain a MultiLevelPreconditioner
> member. For context, my source file that generates this error has the
> following #includes:
> #include "ml_include.h"
> #include "ml_MultiLevelPreconditioner.h"
> #include "ml_epetra_utils.h"
>
>  When I open up the installed ml_MultiLevelPreconditioner.h file, I
> definitely see a definition for class MultiLevelPreconditioner.
>
> In file included from
> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_common.h(56),
>                  from
> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_include.h(16),
>                  from
> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(13),
>                  from
> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_config.h(25):
> warning #47: incompatible redefinition of macro "HAVE_BLAS" (declared at
> line 70 of "/work/01837/truman/trilinosRelease/lib/cm
> ake/Trilinos/../../../include/Epetra_config.h")
>   #define HAVE_BLAS 1
>           ^
>
>  In file included from
> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_common.h(56),
>                  from
> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_include.h(16),
>                  from
> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(13),
>                  from
> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
> /opt/apps/intel15/mvapich2_2_1/petsc/3.5/sandybridge/include/ml_config.h(67):
> warning #47: incompatible redefinition of macro "HAVE_LAPACK" (declared at
> line 105 of "/work/01837/truman/trilinosRelease/lib
> /cmake/Trilinos/../../../include/Epetra_config.h")
>   #define HAVE_LAPACK 1
>           ^
>
>  In file included from
> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_ConfigDefs.h(83),
>                  from
> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO.h(48),
>                  from
> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(18),
>                  from
> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_config.h(41):
> warning #47: incompatible redefinition of macro "HAVE_BLAS" (declared at
> line 25 of "/opt/apps/intel15/mvapich2
> _2_1/petsc/3.5/sandybridge/include/ml_config.h")
>   #define HAVE_BLAS
>           ^
>
>  In file included from
> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_ConfigDefs.h(83),
>                  from
> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO.h(48),
>                  from
> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(18),
>                  from
> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_config.h(71):
> warning #47: incompatible redefinition of macro "HAVE_LAPACK" (declared at
> line 67 of "/opt/apps/intel15/mvapic
> h2_2_1/petsc/3.5/sandybridge/include/ml_config.h")
>   #define HAVE_LAPACK
>           ^
>
>  In file included from
> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_ConfigDefs.h(83),
>                  from
> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO.h(48),
>                  from
> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(18),
>                  from
> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/AztecOO_config.h(120):
> warning #47: incompatible redefinition of macro "HAVE_STRING" (declared at
> line 209 of "/opt/apps/intel15/mvap
> ich2_2_1/petsc/3.5/sandybridge/include/ml_config.h")
>   #define HAVE_STRING
>           ^
>
>  In file included from
> /work/01837/truman/Camellia/src/Solution/Solver.cpp(11):
> /work/01837/truman/Camellia/src/include/SimpleMLSolver.h(26): error:
> namespace "ML_Epetra" has no member "MultiLevelPreconditioner"
>           Teuchos::RCP< ML_Epetra::MultiLevelPreconditioner >
> _savedPreconditioner;
>
> On Thu, May 21, 2015 at 12:16 PM Phipps, Eric T <etphipp at sandia.gov>
> wrote:
>
>>  -D Trilinos_ENABLE_CXX11=ON
>>
>>  -Eric
>>
>>   From: Truman Ellis <truman.e.ellis at gmail.com>
>> Date: Thursday, May 21, 2015 at 11:10 AM
>> To: "Bartlett, Roscoe A." <bartlettra at ornl.gov>, "
>> trilinos-users at trilinos.org" <trilinos-users at trilinos.org>
>> Subject: [EXTERNAL] Re: [Trilinos-Users] Compiling and Linking Errors
>> with Intel
>>
>>   Is there a shortcut to enable C++11 support for all packages, or do I
>> need a line like that for every project I want to build?
>>
>> On Thu, May 21, 2015 at 12:08 PM Bartlett, Roscoe A. <bartlettra at ornl.gov>
>> wrote:
>>
>>>  Truman,
>>>
>>>
>>>
>>> Instructions for turning on C++11 support is described here:
>>>
>>>
>>>
>>>
>>> https://tribits.org/doc/TribitsBuildReference.html#enabling-support-for-c-11
>>>
>>>
>>>
>>> The variable CMAKE_CXX_STANDARD was not present in CMake 2.8.11:
>>>
>>>
>>>
>>>        http://www.cmake.org/cmake/help/v2.8.11/cmake.html
>>>
>>>
>>>
>>> and therefore we can’t use it.  We have to maintain backward
>>> compatibility to CMake 2.8.11, at least for now.
>>>
>>>
>>>
>>> -Ross
>>>
>>>
>>>
>>>
>>>
>>> *From:* Trilinos-Users [mailto:trilinos-users-bounces at trilinos.org] *On
>>> Behalf Of *Truman Ellis
>>> *Sent:* Thursday, May 21, 2015 12:48 PM
>>> *To:* trilinos-users at trilinos.org
>>> *Subject:* [Trilinos-Users] Compiling and Linking Errors with Intel
>>>
>>>
>>>
>>> I downloaded Trilinos 12.0.1 and compiled it with intel compilers on
>>> TACC's Stampede supercomputer. However, when I try to link to it from my
>>> application, I get a bunch of errors similar to
>>>
>>> In file included from
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Kokkos_View.hpp(56),
>>>
>>>                  from
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Kokkos_Parallel.hpp(52),
>>>
>>>                  from
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Kokkos_Serial.hpp(52),
>>>
>>>                  from
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Kokkos_Core.hpp(61),
>>>
>>>                  from
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/KokkosRank.hpp(4),
>>>
>>>                  from
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Intrepid_ArrayTools.hpp(57),
>>>
>>>                  from
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/Intrepid_FunctionSpaceTools.hpp(53),
>>>
>>>                  from
>>> /work/01837/truman/Camellia/src/ScratchPad/IP.cpp(9):
>>>
>>> /work/01837/truman/trilinosRelease/lib/cmake/Trilinos/../../../include/impl/Kokkos_ViewOffset.hpp(1215):
>>> error: namespace "std" has no member "enable_if"
>>>
>>>     typename std::enable_if< (std::is_integral<I0>::value) &&
>>> (shape_type::rank==1),size_type>::type
>>>
>>>
>>>
>>> I've made sure my do-configure scripts for both Trilinos and my own
>>> application include a line
>>>
>>> -D CMAKE_CXX_STANDARD:STRING="11" \
>>>
>>> in order to guarantee compilation with C++11. Any advice on how to fix
>>> this?
>>>
>>
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