[Trilinos-Users] [EXTERNAL] trilinos-12.0.1 with intel compiler - exo2mat error
Giuseppe Calo
giuseppe.calo at cmcc.it
Wed Jun 24 05:19:45 EDT 2015
Hi William,
now, with you suggestion, I have received:
[ 63%] Building CXX object packages/fei/base/CMakeFiles/fei_base.dir/snl_fei_RaggedTable_specialize.cpp.o
/usr/include/c++/4.4.6/bits/stl_pair.h(90): error: a value of type "int" cannot be used to initialize an entity of type "fei::ctg_set<int> *"
second(std::forward<_U2>(__y)) { }
^
detected during:
instantiation of "std::pair<_T1, _T2>::pair(_U1 &&, _U2 &&) [with _T1=int, _T2=fei::ctg_set<int> *, _U1=int, _U2=int]" at line 85 of "/users/home/SOFTWARE/trilinos/trilinos-12.0.1-Source/packages/fei/base/snl_fei_MapContig.hpp"
instantiation of "snl_fei::MapContig<VAL_TYPE>::value_type snl_fei::MapContig<VAL_TYPE>::iterator::operator*() [with VAL_TYPE=fei::ctg_set<int> *]" at line 37 of "/users/home/SOFTWARE/trilinos/trilinos-12.0.1-Source/packages/fei/base/snl_fei_RaggedTable_specialize.hpp"
compilation aborted for /users/home/SOFTWARE/trilinos/trilinos-12.0.1-Source/packages/fei/base/snl_fei_RaggedTable_specialize.cpp (code 2)
I use icc version 15.0.3 (gcc version 4.4.6 compatibility) and:
> BOOST/boost-1.58.0
> EMOS/libemos-4.0.6
> IMPI/intel_mpi_5.0.3.048
> SZIP/szip-2.1_int15
> PARALLEL_NETCDF/parallel-netcdf-1.6.1
> GRIB_API/grib_api-1.13.1
> HDF5/hdf5-1.8.15-patch1_parallel
> MAGICS/magics-2.24.7
> NETCDF/netcdf-C_4.3.3.1-F_4.4.2_C++_4.2.1_parallel
> SWIG/swig-3.0.5
> UDUNITS/udunits-2.2.19
> CMAKE/cmake-3.3.0-rc1
Any suggestions?
Thanks
--------------------------------------------------------------------
Giuseppe Calò
CMCC - Supercomputing Center
presso Complesso Ecotekne - Università del Salento
Prov.le Lecce - Monteroni - 73100 Lecce IT
http://www.cmcc.it/supercomputingcenter
Mobile (+39) 320 8190020
Mail giuseppe.calo at cmcc.it
--------------------------------------------------------------------
Il giorno 24/giu/2015, alle ore 00:44, "Williams, Alan B" <william at sandia.gov> ha scritto:
> It looks like line 85 of snl_fei_MapContig.hpp is constructing ‘value_type(0,0)’ where the second argument to value_type is a template-parameter (named VAL_TYPE) that is actually a pointer.
>
> So a quick work-around to try (if you don’t mind trying something) would be to cast that second ‘0’ like this: static_cast<VAL_TYPE>(0).
> It looks like that change may also need to be made on line 87.
>
> Which version of the intel compiler are you using? This code is quite old, and we’ve built it on intel versions 12 through 14 routinely.
>
> Alan
>
>
> From: Trilinos-Users [mailto:trilinos-users-bounces at trilinos.org] On Behalf Of Giuseppe Calo
> Sent: Tuesday, June 23, 2015 10:00 AM
> To: Rossi Simone
> Cc: trilinos-users at trilinos.org
> Subject: [EXTERNAL] Re: [Trilinos-Users] trilinos-12.0.1 with intel compiler - exo2mat error
>
> Many Thanks Simone,
>
> now the "make" get the 61% with:
>
> [ 63%] Building CXX object packages/fei/base/CMakeFiles/fei_base.dir/snl_fei_RaggedTable_specialize.cpp.o
> /usr/include/c++/4.4.6/bits/stl_pair.h(90): error: a value of type "int" cannot be used to initialize an entity of type "fei::ctg_set<int> *"
> second(std::forward<_U2>(__y)) { }
> ^
> detected during:
> instantiation of "std::pair<_T1, _T2>::pair(_U1 &&, _U2 &&) [with _T1=int, _T2=fei::ctg_set<int> *, _U1=int, _U2=int]" at line 85 of "/users/home/SOFTWARE/trilinos/trilinos-12.0.1-Source/packages/fei/base/snl_fei_MapContig.hpp"
> instantiation of "snl_fei::MapContig<VAL_TYPE>::value_type snl_fei::MapContig<VAL_TYPE>::iterator::operator*() [with VAL_TYPE=fei::ctg_set<int> *]" at line 37 of "/users/home/SOFTWARE/trilinos/trilinos-12.0.1-Source/packages/fei/base/snl_fei_RaggedTable_specialize.hpp"
>
> Any idea?
> Regards,
> --------------------------------------------------------------------
> Giuseppe Calò
> CMCC - Supercomputing Center
> presso Complesso Ecotekne - Università del Salento
> Prov.le Lecce - Monteroni - 73100 Lecce IT
> http://www.cmcc.it/supercomputingcenter
>
> Mobile (+39) 320 8190020
> Mail giuseppe.calo at cmcc.it
> --------------------------------------------------------------------
>
> Il giorno 23/giu/2015, alle ore 14:58, Rossi Simone <simone.rossi at epfl.ch> ha scritto:
>
>
> Dear Giuseppe,
> "MAT_F_DONT_COPY_DATA" is a matio_flags.
> My guess is that trillions cannot find Matio.h,
> or you do not have it.
> I compiled successfully seacas using the flag
> -D TPL_ENABLE_Matio=OFF
> in the configuration.
> I hope this helps,
> Best,
> Simone
>
> Simone Rossi,
> Duke University
> simone.rossi at duke.edu
>
> Da: Trilinos-Users [trilinos-users-bounces at trilinos.org] per conto di Giuseppe Calo [giuseppe.calo at cmcc.it]
> Inviato: martedì 23 giugno 2015 10.05
> A: trilinos-users at trilinos.org
> Cc: Giuseppe Calo
> Oggetto: [Trilinos-Users] trilinos-12.0.1 with intel compiler - exo2mat error
>
> Hi all,
> I need to install "trilinos-12.0.1" with the intel compiler.
>
> I have just compiled and installed (with the intel compiler):
>
> BOOST/boost-1.58.0
> EMOS/libemos-4.0.6
> IMPI/intel_mpi_5.0.3.048
> SZIP/szip-2.1_int15
> PARALLEL_NETCDF/parallel-netcdf-1.6.1
> GRIB_API/grib_api-1.13.1
> HDF5/hdf5-1.8.15-patch1_parallel
> MAGICS/magics-2.24.7
> NETCDF/netcdf-C_4.3.3.1-F_4.4.2_C++_4.2.1_parallel
> SWIG/swig-3.0.5
> UDUNITS/udunits-2.2.19
> CMAKE/cmake-3.3.0-rc1
>
> Before to run "make":
>
> - I load the current environment module:
>
> BOOST/boost-1.58.0
> EMOS/libemos-4.0.6
> IMPI/intel_mpi_5.0.3.048
> SZIP/szip-2.1_int15
> PARALLEL_NETCDF/parallel-netcdf-1.6.1
> GRIB_API/grib_api-1.13.1
> HDF5/hdf5-1.8.15-patch1_parallel
> MAGICS/magics-2.24.7
> NETCDF/netcdf-C_4.3.3.1-F_4.4.2_C++_4.2.1_parallel
> SWIG/swig-3.0.5
> UDUNITS/udunits-2.2.19
> CMAKE/cmake-3.3.0-rc1
>
> - run "cmake" with:
>
> cmake \
> -DMPI_BASE_DIR=/users/home/opt/intel/impi/5.0.3.048/intel64 \
> -DCMAKE_INSTALL_PREFIX:FILEPATH="/users/home/opt-intel_2015.3.187/trilinos/trilinos_12.0.1" \
> -DMPI_EXEC:FILEPATH=/users/home/opt/intel/impi/5.0.3.048/intel64/bin/mpirun \
> -DBLAS_LIBRARY_DIRS:FILEPATH=/users/home/opt/intel/composer_xe_2015.3.187/mkl/lib/intel64 \
> -DBLAS_LIBRARY_NAMES:STRING=mkl_rt \
> -D LAPACK_LIBRARY_NAMES:STRING=mkl_rt \
> -DLAPACK_LIBRARY_DIRS:FILEPATH=/users/home/opt/intel/composer_xe_2015.3.187/mkl/lib/intel64 \
> -DCMAKE_EXE_LINKER_FLAGS="-L/users/home/opt-intel_2015.3.187/netcdf/netcdf-C_4.3.3.1-F_4.4.2_C++_4.2.1-parallel/lib -lnetcdf -L/users/home/opt/intel/composer_xe_2015.3.187/compiler/lib/intel64 -L/users/home/opt/intel/composer_xe_2015.3.187/mkl/lib/intel64" \
> -DTPL_ENABLE_MPI=ON \
> -DTrilinos_ENABLE_ALL_PACKAGES=ON \
> -DTPL_ENABLE_GLM=OFF \
> -DTrilinos_ENABLE_CXX11=ON \
> -D Trilinos_ENABLE_Piro:BOOL=ON \
> -D Trilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON \
> -D Trilinos_ENABLE_Netcdf=ON \
> -D Trilinos_ENABLE_OpenMP:BOOL=ON \
> -D Trilinos_ENABLE_Epetra:BOOL=ON \
> -D Trilinos_ENABLE_Teuchos:BOOL=ON \
> -D Trilinos_ENABLE_CTrilinos:BOOL=ON \
> -D Trilinos_ENABLE_ForTrilinos:BOOL=ON \
> -D DART_TESTING_TIMEOUT:STRING=600 \
> -D Trilinos_EXTRA_LINK_FLAGS:STRING="$FORTRAN_LIBRARIES" \
> -D BUILD_SHARED_LIBS:BOOL=ON \
> -D CMAKE_CXX_COMPILER:STRING=/users/home/opt/intel/impi/5.0.3.048/intel64/bin/mpiicpc \
> -D CMAKE_Fortran_FLAGS:STRING="-lgfortran" \
> /users/home/SOFTWARE/trilinos/trilinos-12.0.1-Source
>
> but I always receive:
>
> Scanning dependencies of target exo2mat
> [ 41%] Building C object packages/seacas/applications/exo2mat/CMakeFiles/exo2mat.dir/exo2mat.c.o
> /users/home/SOFTWARE/trilinos/trilinos-12.0.1-Source/packages/seacas/applications/exo2mat/exo2mat.c: In function ‘matPutStr’:
> /users/home/SOFTWARE/trilinos/trilinos-12.0.1-Source/packages/seacas/applications/exo2mat/exo2mat.c:163: error: ‘MAT_F_DONT_COPY_DATA’ undeclared (first use in this function)
> /users/home/SOFTWARE/trilinos/trilinos-12.0.1-Source/packages/seacas/applications/exo2mat/exo2mat.c:163: error: (Each undeclared identifier is reported only once
> /users/home/SOFTWARE/trilinos/trilinos-12.0.1-Source/packages/seacas/applications/exo2mat/exo2mat.c:163: error: for each function it appears in.)
> ……..
> …
> .
>
> Can someone help me?
> Thanks.
> --------------------------------------------------------------------
> Giuseppe Calò
> CMCC - Supercomputing Center
> presso Complesso Ecotekne - Università del Salento
> Prov.le Lecce - Monteroni - 73100 Lecce IT
> http://www.cmcc.it/supercomputingcenter
>
> Mobile (+39) 320 8190020
> Mail giuseppe.calo at cmcc.it
> --------------------------------------------------------------------
>
>
>
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