[Trilinos-Users] trilinos 10.12.2 make error

[Nicolas Aristocleous]

Dear all,

I am trying to install the parallel version of lifeV (version 3.8.5) on an
ubuntu 12.04 desktop.
I follow the steps as presented in:

http://www.lifev.org/documentation/installation-tutorial

and everything works smoothly up to the "make -j3 install" command. Please
see the attached error_log.txt file of the console output and the resulting
error.

Thanks in advance,
Nicolas
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[ 46%] Building CXX object packages/epetraext/src/CMakeFiles/epetraext.dir/block/EpetraExt_BlockVector.cpp.o
In file included from /home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:49:0:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.h: In member function ‘void EpetraExt::HDF5::CreateGroup(const string&)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.h:372:100: error: too many arguments to function ‘hid_t H5Gcreate1(hid_t, const char*, size_t)’
/usr/include/H5Gpublic.h:147:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In function ‘void WriteParameterListRecursive(const Teuchos::ParameterList&, hid_t)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:119:100: error: too many arguments to function ‘hid_t H5Gcreate1(hid_t, const char*, size_t)’
/usr/include/H5Gpublic.h:147:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:141:116: error: too many arguments to function ‘hid_t H5Dcreate1(hid_t, const char*, hid_t, hid_t, hid_t)’
/usr/include/H5Dpublic.h:143:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:157:125: error: too many arguments to function ‘hid_t H5Dcreate1(hid_t, const char*, hid_t, hid_t, hid_t)’
/usr/include/H5Dpublic.h:143:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:172:122: error: too many arguments to function ‘hid_t H5Dcreate1(hid_t, const char*, hid_t, hid_t, hid_t)’
/usr/include/H5Dpublic.h:143:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:187:125: error: too many arguments to function ‘hid_t H5Dcreate1(hid_t, const char*, hid_t, hid_t, hid_t)’
/usr/include/H5Dpublic.h:143:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In function ‘herr_t f_operator(hid_t, const char*, void*)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:232:51: error: too many arguments to function ‘hid_t H5Dopen1(hid_t, const char*)’
/usr/include/H5Dpublic.h:145:14: note: declared here
In file included from /home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5_DistObject.cpp:57:0:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.h: In member function ‘void EpetraExt::HDF5::CreateGroup(const string&)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.h:372:100: error: too many arguments to function ‘hid_t H5Gcreate1(hid_t, const char*, size_t)’
/usr/include/H5Gpublic.h:147:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Write(const string&, const Teuchos::ParameterList&)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:955:96: error: too many arguments to function ‘hid_t H5Gcreate1(hid_t, const char*, size_t)’
/usr/include/H5Gpublic.h:147:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Read(const string&, Teuchos::ParameterList&)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:986:62: error: too many arguments to function ‘hid_t H5Gopen1(hid_t, const char*)’
/usr/include/H5Gpublic.h:148:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Write(const string&, const Epetra_MultiVector&, bool)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1044:62: error: too many arguments to function ‘hid_t H5Gopen1(hid_t, const char*)’
/usr/include/H5Gpublic.h:148:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1047:113: error: too many arguments to function ‘hid_t H5Dcreate1(hid_t, const char*, hid_t, hid_t, hid_t)’
/usr/include/H5Dpublic.h:143:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Read(const string&, Epetra_MultiVector*&, bool, const int&)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1138:62: error: too many arguments to function ‘hid_t H5Gopen1(hid_t, const char*)’
/usr/include/H5Gpublic.h:148:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1141:58: error: too many arguments to function ‘hid_t H5Dopen1(hid_t, const char*)’
/usr/include/H5Dpublic.h:145:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Write(const string&, const string&, int)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1454:68: error: too many arguments to function ‘hid_t H5Gopen1(hid_t, const char*)’
/usr/include/H5Gpublic.h:148:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1456:74: error: too many arguments to function ‘hid_t H5Dcreate1(hid_t, const char*, hid_t, hid_t, hid_t)’
/usr/include/H5Dpublic.h:143:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Write(const string&, const string&, double)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1476:68: error: too many arguments to function ‘hid_t H5Gopen1(hid_t, const char*)’
/usr/include/H5Gpublic.h:148:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1478:80: error: too many arguments to function ‘hid_t H5Dcreate1(hid_t, const char*, hid_t, hid_t, hid_t)’
/usr/include/H5Dpublic.h:143:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Read(const string&, const string&, int&)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1498:68: error: too many arguments to function ‘hid_t H5Gopen1(hid_t, const char*)’
/usr/include/H5Gpublic.h:148:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1501:69: error: too many arguments to function ‘hid_t H5Dopen1(hid_t, const char*)’
/usr/include/H5Dpublic.h:145:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Read(const string&, const string&, double&)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1520:68: error: too many arguments to function ‘hid_t H5Gopen1(hid_t, const char*)’
/usr/include/H5Gpublic.h:148:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1523:69: error: too many arguments to function ‘hid_t H5Dopen1(hid_t, const char*)’
/usr/include/H5Dpublic.h:145:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Write(const string&, const string&, const string&)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1544:68: error: too many arguments to function ‘hid_t H5Gopen1(hid_t, const char*)’
/usr/include/H5Gpublic.h:148:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1552:83: error: too many arguments to function ‘hid_t H5Dcreate1(hid_t, const char*, hid_t, hid_t, hid_t)’
/usr/include/H5Dpublic.h:143:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Read(const string&, const string&, std::string&)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1574:68: error: too many arguments to function ‘hid_t H5Gopen1(hid_t, const char*)’
/usr/include/H5Gpublic.h:148:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1576:72: error: too many arguments to function ‘hid_t H5Dopen1(hid_t, const char*)’
/usr/include/H5Dpublic.h:145:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Write(const string&, const string&, int, int, void*)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1610:68: error: too many arguments to function ‘hid_t H5Gopen1(hid_t, const char*)’
/usr/include/H5Gpublic.h:148:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1613:80: error: too many arguments to function ‘hid_t H5Dcreate1(hid_t, const char*, hid_t, hid_t, hid_t)’
/usr/include/H5Dpublic.h:143:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Read(const string&, const string&, int, int, void*)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1638:68: error: too many arguments to function ‘hid_t H5Gopen1(hid_t, const char*)’
/usr/include/H5Gpublic.h:148:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1640:69: error: too many arguments to function ‘hid_t H5Dopen1(hid_t, const char*)’
/usr/include/H5Dpublic.h:145:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Write(const string&, const string&, int, int, int, const void*)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1674:68: error: too many arguments to function ‘hid_t H5Gopen1(hid_t, const char*)’
/usr/include/H5Gpublic.h:148:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1676:66: error: too many arguments to function ‘hid_t H5Dcreate1(hid_t, const char*, hid_t, hid_t, hid_t)’
/usr/include/H5Dpublic.h:143:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp: In member function ‘void EpetraExt::HDF5::Read(const string&, const string&, int, int, int, void*)’:
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1721:68: error: too many arguments to function ‘hid_t H5Gopen1(hid_t, const char*)’
/usr/include/H5Gpublic.h:148:14: note: declared here
/home/darwin/lifev-env/trilinos-10.12.2-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1722:72: error: too many arguments to function ‘hid_t H5Dopen1(hid_t, const char*)’
/usr/include/H5Dpublic.h:145:14: note: declared here
make[2]: *** [packages/epetraext/src/CMakeFiles/epetraext.dir/inout/EpetraExt_HDF5_DistObject.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
[ 46%] Built target thyraepetra
make[2]: *** [packages/epetraext/src/CMakeFiles/epetraext.dir/inout/EpetraExt_HDF5.cpp.o] Error 1
[ 49%] Built target rythmos
make[1]: *** [packages/epetraext/src/CMakeFiles/epetraext.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 49%] Built target anasazi
[ 50%] Built target thyratpetra
make: *** [all] Error 2