[Trilinos-Users] building Trilinos with hdf5 for Albany

[Radu Popescu]

Hello Peter,

Maybe the version of HDF5 that you are using is not recent enough. I
remember that MPI-IO collective operations were introduced to HDF5 during
the 1.8.X cycle.
Installing a more recent version could fix this.

Best regards,
Radu


On Wed, Sep 3, 2014 at 8:01 PM, Bosler, Peter Andrew <pabosle at sandia.gov>
wrote:

>  Good morning,
>
>  I need to use both Albany’s master branch and its Tpetra branch, so I’m
> trying to build Trilinos to support Albany on a Mac using gcc49 and
> OpenMPI, with the required TPLs (Boost, BoostLib, GML, HDF5, SuperLU, and
> NetCDF).  My configure script runs fine and Cmake is able to find all the
> libraries, but build process keeps getting stuck on an EPetraExt target,
> with the output below.
>
>  I’ve double checked that the HDF5 headers are in the Hdf5_INCLUDE_DIRS
> path set in the configure file; any suggestions on what else I should try?
>
>  Thank you for your time.
>
>  Pete Bosler
>
>
>  /Users/pabosle/Trilinos/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:
> In member function 'void EpetraExt::HDF5::Write(const string&, const
> string&, int, int, int, const void*)':
> /Users/pabosle/Trilinos/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:1691:51:
> error: 'H5Pset_dxpl_mpio' was not declared in this scope
>    H5Pset_dxpl_mpio(plist_id_, H5FD_MPIO_COLLECTIVE);
>                                                    ^
> Scanning dependencies of target thyra_nonlinear_test_models
> [ 70%] Building CXX object
> packages/epetraext/src/CMakeFiles/epetraext.dir/block/EpetraExt_BlockMultiVector.cpp.o
> [ 70%] Building CXX object
> packages/thyra/core/test/nonlinear/models/CMakeFiles/thyra_nonlinear_test_models.dir/Thyra_DiagonalQuadraticResponseOnlyModelEvaluator.cpp.o
> make[2]: ***
> [packages/epetraext/src/CMakeFiles/epetraext.dir/inout/EpetraExt_HDF5.cpp.o]
> Error 1
>  make[2]: *** Waiting for unfinished jobs....
> Scanning dependencies of target thyraepetra
> [ 70%] Building CXX object
> packages/thyra/adapters/epetra/src/CMakeFiles/thyraepetra.dir/Thyra_DiagonalEpetraLinearOpWithSolveFactory.cpp.o
> [ 70%] Built target stkclassic_util_diag
> [ 70%] Building CXX object
> packages/thyra/core/test/nonlinear/models/CMakeFiles/thyra_nonlinear_test_models.dir/Thyra_DiagonalScalarProd.cpp.o
> [ 70%] Building CXX object
> packages/thyra/adapters/epetra/src/CMakeFiles/thyraepetra.dir/Thyra_EpetraLinearOp.cpp.o
> [ 70%] Building CXX object
> packages/thyra/core/test/nonlinear/models/CMakeFiles/thyra_nonlinear_test_models.dir/Thyra_DummyTestModelEvaluator.cpp.o
> [ 70%] Building CXX object
> packages/thyra/core/test/nonlinear/models/CMakeFiles/thyra_nonlinear_test_models.dir/Thyra_Simple2DModelEvaluator.cpp.o
> /Users/pabosle/Trilinos/packages/epetraext/src/model_evaluator/EpetraExt_ModelEvaluatorScalingTools.cpp:71:6:
> warning: 'void {anonymous}::assertModelVarScalings(const
> EpetraExt::ModelEvaluator::InArgs&)' defined but not used
> [-Wunused-function]
>  void assertModelVarScalings(
>       ^
> [ 70%] Building CXX object
> packages/thyra/adapters/epetra/src/CMakeFiles/thyraepetra.dir/Thyra_EpetraOperatorViewExtractorStd.cpp.o
> make[1]: *** [packages/epetraext/src/CMakeFiles/epetraext.dir/all] Error 2
> make[1]: *** Waiting for unfinished jobs....
> [ 70%] Building CXX object
> packages/thyra/adapters/epetra/src/CMakeFiles/thyraepetra.dir/Thyra_EpetraOperatorWrapper.cpp.o
> [ 70%] Building CXX object
> packages/thyra/adapters/epetra/src/CMakeFiles/thyraepetra.dir/Thyra_EpetraThyraWrappers.cpp.o
> [ 70%] Building CXX object
> packages/thyra/adapters/epetra/src/CMakeFiles/thyraepetra.dir/Thyra_get_Epetra_Operator.cpp.o
> Linking CXX static library libthyra_nonlinear_test_models.a
> warning: /opt/local/bin/ranlib: warning for library:
> libthyra_nonlinear_test_models.a the table of contents is empty (no object
> file members in the library define global symbols)
> [ 70%] Built target thyra_nonlinear_test_models
> Linking CXX static library libthyraepetra.a
> [ 70%] Built target thyraepetra
> make: *** [all] Error 2
>
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