[Trilinos-Users] trouble with ifpack2 in trilinos 11.12.1

[Jonathan Hu]

trilinos-users-request at software.sandia.gov wrote on 11/12/2014 10:50 AM:
> Subject:
> [Trilinos-Users] trouble with ifpack2 in trilinos 11.12.1
> From:
> Alicia Klinvex <aklinvex at purdue.edu>
> Date:
> 11/12/2014 10:31 AM
>
> To:
> <trilinos-users at software.sandia.gov>
>
>
> Hello,
>
> I downloaded, configured, and installed Trilinos 11.12.1 recently, but 
> I'm having trouble building my own executables.  When I try to build 
> my code, I get the following error message:
>
> [Xaklinv at eln4 1_Fiedler]$ make fiedler
> /opt/intel/impi/5.0.1.035/intel64/bin/mpiicpc 
> <http://5.0.1.035/intel64/bin/mpiicpc> -O3 -openmp -O3 -DNDEBUG 
>  fiedler.cpp -o fiedler.exe  -I/opt/intel/mkl/include 
> -I/panfs/users/Xaklinv/trilinos-install/include 
> -I/panfs/users/Xaklinv/MUMPS_4.10.0-p3/include -DMYAPP_EPETRA 
> -L/panfs/users/Xaklinv/trilinos-install/lib  -lifpack2-adapters 
> -lifpack2 -lanasazitpetra -lModeLaplace -lanasaziepetra -lanasazi 
> -lbelostpetra -lbelosepetra -lbelos -lml -lifpack -lamesos 
> -lgaleri-xpetra -lgaleri -laztecoo -lisorropia -lthyratpetra 
> -lthyraepetra -lthyracore -lthyratpetra -lthyraepetra -lthyracore 
> -lxpetra-sup -lxpetra-ext -lxpetra -lepetraext -ltpetraext 
> -ltpetrainout -ltpetra -ltriutils -lzoltan -lepetra -lkokkosdisttsqr 
> -lkokkosnodetsqr -lkokkoslinalg -lkokkosnodeapi -lkokkos 
> -lkokkosdisttsqr -lkokkosnodetsqr -lkokkoslinalg -lkokkosnodeapi 
> -lkokkos -lrtop -ltpi -lteuchosremainder -lteuchosnumerics 
> -lteuchoscomm -lteuchosparameterlist -lteuchoscore -lteuchosremainder 
> -lteuchosnumerics -lteuchoscomm -lteuchosparameterlist -lteuchoscore 
> /panfs/users/Xaklinv/MUMPS_4.10.0-p3/lib/libdmumps.a 
> /panfs/users/Xaklinv/MUMPS_4.10.0-p3/lib/libmumps_common.a 
> /panfs/users/Xaklinv/MUMPS_4.10.0-p3/lib/libpord.a 
> /panfs/users/Xaklinv/petsc-3.5.2/endv/lib/libscalapack.a 
> /opt/intel/mkl/11.1.3.174/mkl/lib/intel64/libmkl_intel_lp64.so 
> <http://11.1.3.174/mkl/lib/intel64/libmkl_intel_lp64.so> 
> /opt/intel/mkl/11.1.3.174/mkl/lib/intel64/libmkl_intel_thread.so 
> <http://11.1.3.174/mkl/lib/intel64/libmkl_intel_thread.so> 
> /opt/intel/mkl/11.1.3.174/mkl/lib/intel64/libmkl_core.so 
> <http://11.1.3.174/mkl/lib/intel64/libmkl_core.so> 
> /usr/lib64/libpthread.so 
> /opt/intel/mkl/11.1.3.174/mkl/lib/intel64/libmkl_intel_lp64.so 
> <http://11.1.3.174/mkl/lib/intel64/libmkl_intel_lp64.so> 
> /opt/intel/mkl/11.1.3.174/mkl/lib/intel64/libmkl_intel_thread.so 
> <http://11.1.3.174/mkl/lib/intel64/libmkl_intel_thread.so> 
> /opt/intel/mkl/11.1.3.174/mkl/lib/intel64/libmkl_core.so 
> <http://11.1.3.174/mkl/lib/intel64/libmkl_core.so> 
> /usr/lib64/libpthread.so
> [remarks about loops being vectorized...]
> /panfs/users/Xaklinv/trilinos-install/lib/libifpack2.a(Ifpack2_ILUT.cpp.o): 
> In function `Ifpack2::ILUT<Tpetra::RowMatrix<double, int, int, 
> KokkosClassic::SerialNode> 
> >::makeLocalFilter(Teuchos::RCP<Tpetra::RowMatrix<double, int, int, 
> KokkosClassic::SerialNode> const> const&)':
> /panfs/users/Xaklinv/trilinos-11.12.1-Source/packages/ifpack2/src/Ifpack2_ILUT.cpp:(.gnu.linkonce.t._ZN7Ifpack24ILUTIN6Tpetra9RowMatrixIdiiN13KokkosClassic10SerialNodeEEEE15makeLocalFilterERKN7Teuchos3RCPIKS5_EE[.gnu.linkonce.t._ZN7Ifpack24ILUTIN6Tpetra9RowMatrixIdiiN13KokkosClassic10SerialNodeEEEE15makeLocalFilterERKN7Teuchos3RCPIKS5_EE]+0xbf): 
> undefined reference to `Ifpack2::LocalFilter<Tpetra::RowMatrix<double, 
> int, int, KokkosClassic::SerialNode> 
> >::LocalFilter(Teuchos::RCP<Tpetra::RowMatrix<double, int, int, 
> KokkosClassic::SerialNode> const> const&)'
> /panfs/users/Xaklinv/trilinos-install/lib/libifpack2.a(Ifpack2_ILUT.cpp.o): 
> In function `Ifpack2::ILUT<Tpetra::RowMatrix<double, int, int, 
> KokkosClassic::TPINode> 
> >::makeLocalFilter(Teuchos::RCP<Tpetra::RowMatrix<double, int, int, 
> KokkosClassic::TPINode> const> const&)':
> /panfs/users/Xaklinv/trilinos-11.12.1-Source/packages/ifpack2/src/Ifpack2_ILUT.cpp:(.gnu.linkonce.t._ZN7Ifpack24ILUTIN6Tpetra9RowMatrixIdiiN13KokkosClassic7TPINodeEEEE15makeLocalFilterERKN7Teuchos3RCPIKS5_EE[.gnu.linkonce.t._ZN7Ifpack24ILUTIN6Tpetra9RowMatrixIdiiN13KokkosClassic7TPINodeEEEE15makeLocalFilterERKN7Teuchos3RCPIKS5_EE]+0xbf): 
> undefined reference to `Ifpack2::LocalFilter<Tpetra::RowMatrix<double, 
> int, int, KokkosClassic::TPINode> 
> >::LocalFilter(Teuchos::RCP<Tpetra::RowMatrix<double, int, int, 
> KokkosClassic::TPINode> const> const&)'
> /panfs/users/Xaklinv/trilinos-install/lib/libifpack2.a(Ifpack2_ILUT.cpp.o): 
> In function `Ifpack2::ILUT<Tpetra::RowMatrix<double, int, int, 
> KokkosClassic::TPINode> >::initialize()':
> /panfs/users/Xaklinv/trilinos-11.12.1-Source/packages/ifpack2/src/Ifpack2_ILUT.cpp:(.gnu.linkonce.t._ZN7Ifpack24ILUTIN6Tpetra9RowMatrixIdiiN13KokkosClassic7TPINodeEEEE10initializeEv[.gnu.linkonce.t._ZN7Ifpack24ILUTIN6Tpetra9RowMatrixIdiiN13KokkosClassic7TPINodeEEEE10initializeEv]+0x342): 
> undefined reference to `Ifpack2::LocalFilter<Tpetra::RowMatrix<double, 
> int, int, KokkosClassic::TPINode> 
> >::LocalFilter(Teuchos::RCP<Tpetra::RowMatrix<double, int, int, 
> KokkosClassic::TPINode> const> const&)'
> /panfs/users/Xaklinv/trilinos-install/lib/libifpack2.a(Ifpack2_ILUT.cpp.o): 
> In function `Ifpack2::ILUT<Tpetra::RowMatrix<double, int, int, 
> KokkosClassic::SerialNode> >::initialize()':
> /panfs/users/Xaklinv/trilinos-11.12.1-Source/packages/ifpack2/src/Ifpack2_ILUT.cpp:(.gnu.linkonce.t._ZN7Ifpack24ILUTIN6Tpetra9RowMatrixIdiiN13KokkosClassic10SerialNodeEEEE10initializeEv[.gnu.linkonce.t._ZN7Ifpack24ILUTIN6Tpetra9RowMatrixIdiiN13KokkosClassic10SerialNodeEEEE10initializeEv]+0x342): 
> undefined reference to `Ifpack2::LocalFilter<Tpetra::RowMatrix<double, 
> int, int, KokkosClassic::SerialNode> 
> >::LocalFilter(Teuchos::RCP<Tpetra::RowMatrix<double, int, int, 
> KokkosClassic::SerialNode> const> const&)'
>
> If I remove "-lifpack2-adapters -lifpack2" from the build line, my 
> code builds successfully.  The problem is, while my code does not 
> currently use ifpack2, I would like to add preconditioning to it...so 
> I will need those libraries. Does anyone know what might be causing 
> this problem?  I would be happy to provide my makefiles and 
> configuration logs if they will be useful.
>
> Thank you,
> Alicia
>

Hi Alicia,

    I see two different node types in the error stack, SerialNode and 
TPINode.   Errors like this can occur, for example, if the default 
template type for the node is used somewhere in Ifpack2, but you've 
specified a type different from the default.   Can you post your 
configure line?

Jonathan