[Trilinos-Users] trilinos-11.8.1, EpetraExt_HDF5

[Antonio Cervone]

older version of ubuntu such as the one you are using have the hdf5
library v1.8 compiled with the v1.6 API for compatibility issues.
the best shot you have at this is to compile your own hdf5 library, to
be used by trilinos.
cheers

antonio

On Thu, Jun 5, 2014 at 9:44 PM, Hoemmen, Mark <mhoemme at sandia.gov> wrote:
> This sounds like an HDF5 library compatibility issue.  See the following
> discussion:
>
> http://www.hdfgroup.org/HDF5/doc/RM/RM_H5G.html#Group-Create
>
> H5Gcreate is a macro.  HDF5 maps it to H5Gcreate1 (three arguments) for
> HDF5 version 1.6.x, and maps it to H5Gcreate2 (five arguments) for HDF5
> version 1.8.x.  It looks like you're picking up the 1.6.x header file,
> even though your installation claims that it is 1.8.x.  Not sure what's
> going on there.
>
> One thing you could try is to replace those calls to H5Gcreate in
> EpetraExt with H5Gcreate2, and see if it builds correctly.
>
> mfh
>
>
> On 6/5/14, 12:00 PM, "trilinos-users-request at software.sandia.gov"
> <trilinos-users-request at software.sandia.gov> wrote:
>
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>>Today's Topics:
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>>   1. trilinos-11.8.1, EpetraExt_HDF5 (Claus Kiefer)
>>
>>
>>----------------------------------------------------------------------
>>
>>Message: 1
>>Date: Thu, 5 Jun 2014 08:22:37 +0200
>>From: Claus Kiefer <kieferclaus at gmail.com>
>>To: trilinos-users at software.sandia.gov
>>Subject: [Trilinos-Users] trilinos-11.8.1, EpetraExt_HDF5
>>Message-ID:
>>       <CACxCpZFtb6V6_Mt=3dmM+SpRvG0qRivMUQmuZw9+xgov7ZOG9w at mail.gmail.com>
>>Content-Type: text/plain; charset="utf-8"
>>
>>Dear Trilinos-team
>>
>>the compilation of trilinos-11.8.1 ends up with the error message:
>>
>>
>>
>>*trilinos-11.8.1-Source/packages/epetraext/src/inout/EpetraExt_HDF5.cpp:49
>>:/usr/local/include/H5Gpublic.h:
>>In member function ?void EpetraExt::HDF5::CreateGroup(const
>>std::string&)?:
>>/usr/local/include/H5Gpublic.h:147: error: too many arguments to function
>>?hid_t H5Gcreate1(hid_t, const char*, size_t)?*
>>
>>Do you have any idea what's wrong ?
>>
>>I'm currently working on Ubuntu 10.04 - compilation is done according to
>>the installation guide. libhdf5-openmpi-dev 1.8.4-5 is installed.
>>
>>best regards, Claus
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