[Trilinos-Users] [EXTERNAL] building Trilinos with BUILD_SHARED_LIBS on
Bill Spotz
wfspotz at sandia.gov
Wed Dec 17 11:18:34 MST 2014
OK, cool. I need to figure this out, and when I do, I'll let you know.
-Bill
On Dec 16, 2014, at 5:11 PM, Roberts, Nathan V. <nvroberts at alcf.anl.gov> wrote:
> Thanks, Bill. On the Mountain Lion machine, I added the line
>
> -D PyTrilinos_ENABLE_Tpetra:BOOL=OFF \
>
> to my do-configure script, and now it's building successfully! Thanks for your help. While it might be nice eventually to turn Tpetra and Fortran back on, for my immediate purposes, this will work just fine.
>
> Regards,
> Nate
>
> On Dec 16, 2014, at 4:28 PM, Bill Spotz <wfspotz at sandia.gov>
> wrote:
>
>> Nate,
>>
>> Just yesterday, I saw the same build error for the very first time: same SWIG function, same line, same abort trap, same SWIG interface file. My next step in tracking it down will be to disable Tpetra, to see if Tpetra.i is the culprit. You could try this experiment on your own, as I have a couple higher priority items on my to-do list. But I will get to it soon.
>>
>> Good to hear about Yosemite.
>>
>> -Bill
>>
>> On Dec 16, 2014, at 1:27 PM, Roberts, Nathan V. <nvroberts at alcf.anl.gov> wrote:
>>
>>> Update: I do get as far, and do get the same swig error during my Trilinos build, on the Yosemite machine as I do on the Mountain Lion machine. Any advice would be greatly appreciated.
>>>
>>> Thanks!
>>> Nate
>>>
>>> On Dec 16, 2014, at 12:24 PM, "Roberts, Nathan V." <nvroberts at alcf.anl.gov>
>>> wrote:
>>>
>>>> Bill (and Trilinos-Users),
>>>>
>>>> Thanks for your reply—it looks to me like you were right to suspect Fortran. On my Mountain Lion (10.8) machine, I'm now getting further than before, but I do now have a swig-related build issue. The error message is below, and again below that, my current do-configure script. As you can see, I'm trying to use swig 3.0.2 (the latest release). I did also try with 2.0.8, but got an error saying that a version > 3.0 was required. Any ideas on how I might resolve this?
>>>>
>>>> (I'm still working on getting as far on the Yosemite machine, but indications are that Yosemite is not involved in the earlier issues.)
>>>>
>>>> Nate
>>>>
>>>> Assertion failed: (b->refcount > 0), function DohDelete, file DOH/base.c, line 42.
>>>> /bin/sh: line 1: 20863 Abort trap: 6 /Users/nroberts/lib/swig-3.0.2/bin/swig -python -I/Users/nroberts/publicTrilinos/build/release-shared/packages/PyTrilinos/doc/Doxygen -noproxydel -outdir PyTrilinos -c++ -I/Users/nroberts/publicTrilinos/build/release-shared -I/Users/nroberts/publicTrilinos/build/release-shared/packages/PyTrilinos/src -I/Users/nroberts/publicTrilinos/packages/PyTrilinos/src -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Applications/paraview.app/Contents/Python/numpy/core/include -I/Applications/paraview.app/Contents/Python/mpi4py/include -I/Users/nroberts/publicTrilinos/build/release-shared -I/Users/nroberts/publicTrilinos/packages/nox/src-loca/src-thyra -I/Users/nroberts/publicTrilinos/packages/nox/src-loca/src-epetra -I/Users/nroberts/publicTrilinos/packages/nox/src-loca/src-epetra/continuation-manager -I/Users/nroberts/publicTrilinos/packages/nox/src-loca/src-lapack -I/Users/nroberts/publicTrilinos/packages/nox/src-loca/src 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-I/Users/nroberts/publicTrilinos/packages/tpetra/ext -I/Users/nroberts/publicTrilinos/build/release-shared/packages/tpetra/ext -I/Users/nroberts/publicTrilinos/packages/tpetra/inout -I/Users/nroberts/publicTrilinos/build/release-shared/packages/tpetra/inout -I/Users/nroberts/publicTrilinos/packages/tpetra/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/tpetra/src -I/Users/nroberts/publicTrilinos/packages/kokkos/TSQR/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/kokkos/TSQR/src -I/Users/nroberts/publicTrilinos/packages/kokkos/classic/LinAlg -I/Users/nroberts/publicTrilinos/packages/kokkos/classic/NodeAPI -I/Users/nroberts/publicTrilinos/build/release-shared/packages/kokkos/classic/NodeAPI -I/Users/nroberts/publicTrilinos/build/release-shared/packages/kokkos/classic/src -I/Users/nroberts/publicTrilinos/packages/kokkos/classic/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/ThreadPool/src -I/Users/nroberts/publicTrilinos/packages/ThreadPool/src -I/Users/nroberts/publicTrilinos/build/release-shared -I/Users/nroberts/publicTrilinos/build/release-shared/packages/aztecoo/src -I/Users/nroberts/publicTrilinos/packages/aztecoo/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/triutils/src -I/Users/nroberts/publicTrilinos/packages/triutils/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/epetra/src -I/Users/nroberts/publicTrilinos/packages/epetra/src -I/Users/nroberts/publicTrilinos/packages/teuchos/remainder/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/numerics/src -I/Users/nroberts/publicTrilinos/packages/teuchos/comm/src -I/Users/nroberts/publicTrilinos/packages/teuchos/parameterlist/src -I/Users/nroberts/publicTrilinos/build/release-shared -I/Users/nroberts/publicTrilinos/build/release-shared/packages/pliris/src -I/Users/nroberts/publicTrilinos/packages/pliris/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/epetra/src -I/Users/nroberts/publicTrilinos/packages/epetra/src -I/Users/nroberts/publicTrilinos/packages/teuchos/remainder/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/numerics/src -I/Users/nroberts/publicTrilinos/packages/teuchos/comm/src -I/Users/nroberts/publicTrilinos/packages/teuchos/parameterlist/src -I/Users/nroberts/publicTrilinos/build/release-shared -I/Users/nroberts/publicTrilinos/build/release-shared/packages/isorropia/src -I/Users/nroberts/publicTrilinos/packages/isorropia/src -I/Users/nroberts/publicTrilinos/packages/isorropia/src/epetra -I/Users/nroberts/publicTrilinos/packages/isorropia/src/epetra/zoltanLib -I/Users/nroberts/publicTrilinos/build/release-shared/packages/epetraext/src -I/Users/nroberts/publicTrilinos/packages/epetraext/src -I/Users/nroberts/publicTrilinos/packages/epetraext/src/transform -I/Users/nroberts/publicTrilinos/packages/epetraext/src/inout -I/Users/nroberts/publicTrilinos/packages/epetraext/src/coloring -I/Users/nroberts/publicTrilinos/packages/epetraext/src/model_evaluator -I/Users/nroberts/publicTrilinos/packages/epetraext/src/block -I/Users/nroberts/publicTrilinos/packages/epetraext/src/restrict -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Users/nroberts/publicTrilinos/build/release-shared/packages/triutils/src -I/Users/nroberts/publicTrilinos/packages/triutils/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/epetra/src -I/Users/nroberts/publicTrilinos/packages/epetra/src -I/Users/nroberts/publicTrilinos/packages/teuchos/remainder/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/numerics/src -I/Users/nroberts/publicTrilinos/packages/teuchos/comm/src -I/Users/nroberts/publicTrilinos/packages/teuchos/parameterlist/src -I/Users/nroberts/lib/hdf5/include -I/Users/nroberts/publicTrilinos/packages/tpetra/ext -I/Users/nroberts/publicTrilinos/build/release-shared/packages/tpetra/ext -I/Users/nroberts/publicTrilinos/packages/tpetra/inout -I/Users/nroberts/publicTrilinos/build/release-shared/packages/tpetra/inout -I/Users/nroberts/publicTrilinos/packages/tpetra/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/tpetra/src -I/Users/nroberts/publicTrilinos/packages/kokkos/TSQR/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/kokkos/TSQR/src -I/Users/nroberts/publicTrilinos/packages/kokkos/classic/LinAlg -I/Users/nroberts/publicTrilinos/packages/kokkos/classic/NodeAPI -I/Users/nroberts/publicTrilinos/build/release-shared/packages/kokkos/classic/NodeAPI -I/Users/nroberts/publicTrilinos/build/release-shared/packages/kokkos/classic/src -I/Users/nroberts/publicTrilinos/packages/kokkos/classic/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/ThreadPool/src -I/Users/nroberts/publicTrilinos/packages/ThreadPool/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/zoltan/src -I/Users/nroberts/publicTrilinos/packages/zoltan/src/include -I/Users/nroberts/publicTrilinos/packages/zoltan/src/all -I/Users/nroberts/publicTrilinos/packages/zoltan/src/coloring -I/Users/nroberts/publicTrilinos/packages/zoltan/src/graph -I/Users/nroberts/publicTrilinos/packages/zoltan/src/ha -I/Users/nroberts/publicTrilinos/packages/zoltan/src/hier -I/Users/nroberts/publicTrilinos/packages/zoltan/src/hsfc -I/Users/nroberts/publicTrilinos/packages/zoltan/src/lb -I/Users/nroberts/publicTrilinos/packages/zoltan/src/matrix -I/Users/nroberts/publicTrilinos/packages/zoltan/src/order -I/Users/nroberts/publicTrilinos/packages/zoltan/src/par -I/Users/nroberts/publicTrilinos/packages/zoltan/src/params -I/Users/nroberts/publicTrilinos/packages/zoltan/src/tpls -I/Users/nroberts/publicTrilinos/packages/zoltan/src/phg -I/Users/nroberts/publicTrilinos/packages/zoltan/src/rcb -I/Users/nroberts/publicTrilinos/packages/zoltan/src/reftree -I/Users/nroberts/publicTrilinos/packages/zoltan/src/simple -I/Users/nroberts/publicTrilinos/packages/zoltan/src/timer -I/Users/nroberts/publicTrilinos/packages/zoltan/src/Utilities/Communication -I/Users/nroberts/publicTrilinos/packages/zoltan/src/Utilities/DDirectory -I/Users/nroberts/publicTrilinos/packages/zoltan/src/Utilities/Timer -I/Users/nroberts/publicTrilinos/packages/zoltan/src/Utilities/shared -I/Users/nroberts/publicTrilinos/packages/zoltan/src/zz -I/usr/include -I/Users/nroberts/publicTrilinos/build/release-shared -I/Users/nroberts/publicTrilinos/build/release-shared/packages/epetraext/src -I/Users/nroberts/publicTrilinos/packages/epetraext/src -I/Users/nroberts/publicTrilinos/packages/epetraext/src/transform -I/Users/nroberts/publicTrilinos/packages/epetraext/src/inout -I/Users/nroberts/publicTrilinos/packages/epetraext/src/coloring -I/Users/nroberts/publicTrilinos/packages/epetraext/src/model_evaluator -I/Users/nroberts/publicTrilinos/packages/epetraext/src/block -I/Users/nroberts/publicTrilinos/packages/epetraext/src/restrict -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Users/nroberts/publicTrilinos/build/release-shared/packages/triutils/src -I/Users/nroberts/publicTrilinos/packages/triutils/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/epetra/src -I/Users/nroberts/publicTrilinos/packages/epetra/src -I/Users/nroberts/publicTrilinos/packages/teuchos/remainder/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/numerics/src -I/Users/nroberts/publicTrilinos/packages/teuchos/comm/src -I/Users/nroberts/publicTrilinos/packages/teuchos/parameterlist/src -I/Users/nroberts/lib/hdf5/include -I/Users/nroberts/publicTrilinos/build/release-shared -I/Users/nroberts/publicTrilinos/packages/tpetra/ext -I/Users/nroberts/publicTrilinos/build/release-shared/packages/tpetra/ext -I/Users/nroberts/publicTrilinos/packages/tpetra/inout -I/Users/nroberts/publicTrilinos/build/release-shared/packages/tpetra/inout -I/Users/nroberts/publicTrilinos/packages/tpetra/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/tpetra/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/epetra/src -I/Users/nroberts/publicTrilinos/packages/epetra/src -I/Users/nroberts/publicTrilinos/packages/teuchos/remainder/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/numerics/src -I/Users/nroberts/publicTrilinos/packages/teuchos/comm/src -I/Users/nroberts/publicTrilinos/packages/teuchos/parameterlist/src -I/Users/nroberts/publicTrilinos/packages/kokkos/TSQR/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/kokkos/TSQR/src -I/Users/nroberts/publicTrilinos/packages/kokkos/classic/LinAlg -I/Users/nroberts/publicTrilinos/packages/kokkos/classic/NodeAPI -I/Users/nroberts/publicTrilinos/build/release-shared/packages/kokkos/classic/NodeAPI -I/Users/nroberts/publicTrilinos/build/release-shared/packages/kokkos/classic/src -I/Users/nroberts/publicTrilinos/packages/kokkos/classic/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/ThreadPool/src -I/Users/nroberts/publicTrilinos/packages/ThreadPool/src -I/Users/nroberts/publicTrilinos/build/release-shared -I/Users/nroberts/publicTrilinos/build/release-shared/packages/triutils/src -I/Users/nroberts/publicTrilinos/packages/triutils/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/epetra/src -I/Users/nroberts/publicTrilinos/packages/epetra/src -I/Users/nroberts/publicTrilinos/packages/teuchos/remainder/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/numerics/src -I/Users/nroberts/publicTrilinos/packages/teuchos/comm/src -I/Users/nroberts/publicTrilinos/packages/teuchos/parameterlist/src -I/Users/nroberts/publicTrilinos/build/release-shared -I/Users/nroberts/publicTrilinos/build/release-shared/packages/epetra/src -I/Users/nroberts/publicTrilinos/packages/epetra/src -I/Users/nroberts/publicTrilinos/packages/teuchos/remainder/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/numerics/src -I/Users/nroberts/publicTrilinos/packages/teuchos/comm/src -I/Users/nroberts/publicTrilinos/packages/teuchos/parameterlist/src -I/Users/nroberts/publicTrilinos/build/release-shared -I/Users/nroberts/publicTrilinos/packages/teuchos/remainder/src -I/Users/nroberts/publicTrilinos/build/release-shared/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/core/src -I/Users/nroberts/publicTrilinos/packages/teuchos/numerics/src -I/Users/nroberts/publicTrilinos/packages/teuchos/comm/src -I/Users/nroberts/publicTrilinos/packages/teuchos/parameterlist/src -o /Users/nroberts/publicTrilinos/build/release-shared/packages/PyTrilinos/src/TpetraPYTHON_wrap.cpp /Users/nroberts/publicTrilinos/packages/PyTrilinos/src/Tpetra.i
>>>> make[2]: *** [packages/PyTrilinos/src/TpetraPYTHON_wrap.cpp] Error 134
>>>> make[1]: *** [packages/PyTrilinos/src/CMakeFiles/Tpetra.dir/all] Error 2
>>>>
>>>>
>>>> My do-configure script:
>>>>
>>>> EXTRA_ARGS=$@
>>>>
>>>> rm -f CMakeCache.txt
>>>>
>>>> cmake \
>>>> -D Trilinos_WARNINGS_AS_ERRORS_FLAGS:STRING="" \
>>>> -D TPL_ENABLE_MPI:BOOL=ON \
>>>> -D Trilinos_ENABLE_Fortran:BOOL=OFF \
>>>> -D TPL_ENABLE_MUMPS:STRING=OFF \
>>>> -D MUMPS_LIBRARY_DIRS:FILEPATH=/Users/nroberts/src/MUMPS_4.10.0/lib/ \
>>>> -D MUMPS_LIBRARY_NAMES:STRING="dmumps; pord; mumps_common" \
>>>> -D TPL_MUMPS_INCLUDE_DIRS:FILEPATH=/Users/nroberts/lib/mumps-4.10.0/include \
>>>> -D CMAKE_CXX_COMPILER:FILEPATH=/Users/nroberts/lib/openmpi-1.6.5/bin/mpicxx \
>>>> -D CMAKE_C_COMPILER:FILEPATH=/Users/nroberts/lib/openmpi-1.6.5/bin/mpicc \
>>>> -D CMAKE_Fortran_COMPILER:FILEPATH=/Users/nroberts/lib/openmpi-1.6.5/bin/mpif90 \
>>>> -D SWIG_EXECUTABLE:PATH=/Users/nroberts/lib/swig-3.0.2/bin/swig \
>>>> -D Trilinos_SKIP_FORTRANCINTERFACE_VERIFY_TEST:BOOL=ON \
>>>> -D MPI_BASE_DIR:PATH=/Users/nroberts/lib/openmpi-1.6.5 \
>>>> -D HAVE_GCC_ABI_DEMANGLE:BOOL=ON \
>>>> -D DART_TESTING_TIMEOUT:STRING=600 \
>>>> -D CMAKE_VERBOSE_MAKEFILE:BOOL=TRUE \
>>>> -D BUILD_SHARED_LIBS:BOOL=ON \
>>>> -D Trilinos_ENABLE_Anasazi:BOOL=ON \
>>>> -D Trilinos_ENABLE_Belos:BOOL=ON \
>>>> -D Trilinos_ENABLE_Intrepid:BOOL=ON \
>>>> -D Trilinos_ENABLE_Sacado:BOOL=ON \
>>>> -D Trilinos_ENABLE_Epetra:BOOL=ON \
>>>> -D Trilinos_ENABLE_EpetraExt:BOOL=ON \
>>>> -D Trilinos_ENABLE_Teuchos:BOOL=ON \
>>>> -D Trilinos_ENABLE_Shards:BOOL=ON \
>>>> -D Trilinos_ENABLE_Amesos:BOOL=ON \
>>>> -D Trilinos_ENABLE_PyTrilinos:BOOL=ON \
>>>> -D Trilinos_ENABLE_STK:BOOL=OFF \
>>>> -D Trilinos_ENABLE_Zoltan:BOOL=ON \
>>>> -D Trilinos_ENABLE_ML:BOOL=ON \
>>>> -D Trilinos_ENABLE_TESTS:BOOL=OFF \
>>>> -D TPL_ENABLE_HDF5:STRING=ON \
>>>> -D Trilinos_EXTRA_LINK_FLAGS:STRING="/usr/lib/libz.dylib" \
>>>> -D TPL_ENABLE_Zlib:BOOL=ON \
>>>> -D Zlib_LIBRARY_DIRS:FILEPATH="/usr/lib" \
>>>> -D Zlib_LIBRARY_NAMES:FILEPATH="z" \
>>>> -D HDF5_LIBRARY_DIRS:FILEPATH=/Users/nroberts/lib/hdf5/lib \
>>>> -D HDF5_LIBRARY_NAMES:STRING="hdf5" \
>>>> -D TPL_HDF5_LIBRARIES="/Users/nroberts/lib/hdf5/lib/libhdf5.a;/usr/lib/libz.dylib" \
>>>> -D TPL_HDF5_INCLUDE_DIRS:FILEPATH=/Users/nroberts/lib/hdf5/include \
>>>> -D EpetraExt_USING_HDF5:BOOL=ON \
>>>> -DTPL_ENABLE_Netcdf=OFF \
>>>> -DTPL_ENABLE_GLM=OFF \
>>>> -DTrilinos_ASSERT_MISSING_PACKAGES=OFF \
>>>> -D CMAKE_INSTALL_PREFIX:PATH=/Users/nroberts/lib/trilinos/mpi-release-shared/ \
>>>> $EXTRA_ARGS \
>>>> ../../
>>>>
>>>>
>>>> On Dec 14, 2014, at 10:17 PM, Bill Spotz <wfspotz at sandia.gov> wrote:
>>>>
>>>>> Hi Nathan,
>>>>>
>>>>> So the underscores have me thinking that this is a Fortran-related issue. I compile PyTrilinos all the time with shared libraries on, but I also turn Fortran off because getting compiler version numbers to match has been more trouble than it is worth. Try building with Fortran disabled and see if it clears this up.
>>>>>
>>>>> Unfortunately, we haven't been able to upgrade to Yosemite at Sandia, so if it is a 10.10-related problem, I won't be able to reproduce it.
>>>>>
>>>>> If Fortran is the problem, and you need it enabled, then hopefully I'll be able to reproduce it.
>>>>>
>>>>> -Bill
>>>>>
>>>>> On Dec 12, 2014, at 5:23 PM, Roberts, Nathan V. <nvroberts at alcf.anl.gov> wrote:
>>>>>
>>>>>> Hi all,
>>>>>>
>>>>>> I generally build Trilinos statically. However, I’m now interested in experimenting with PyTrilinos—my ultimate interest is in providing a Python interface for Camellia—and it appears that to use this, I need to set
>>>>>>
>>>>>> BUILD_SHARED_LIBS:BOOL=ON
>>>>>>
>>>>>> in my do-configure script. Having done so, the do-configure completes successfully, but the build itself fails while trying to link Epetra. The link line and the error message are below. I include my do-configure script at bottom. Any assistance is very much appreciated. (Building on OS X Yosemite.)
>>>>>>
>>>>>> I have the same issue with both the public git repo and the 11.12.1 release.
>>>>>>
>>>>>> Thanks,
>>>>>> Nate
>>>>>>
>>>>>> /Users/nroberts/lib/openmpi-1.8.3/bin/mpicxx -O3 -DNDEBUG -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 11.0.0 -current_version 11.12.1 -o libepetra.11.12.1.dylib -install_name /Users/nroberts/trilinos-11.12.1-Source/build/mpi-release-shared/packages/epetra/src/libepetra.11.dylib CMakeFiles/epetra.dir/Epetra_BLAS.cpp.o CMakeFiles/epetra.dir/Epetra_BasicDirectory.cpp.o CMakeFiles/epetra.dir/Epetra_BasicRowMatrix.cpp.o CMakeFiles/epetra.dir/Epetra_BlockMap.cpp.o CMakeFiles/epetra.dir/Epetra_BlockMapData.cpp.o CMakeFiles/epetra.dir/Epetra_C_wrappers.cpp.o CMakeFiles/epetra.dir/Epetra_CompObject.cpp.o CMakeFiles/epetra.dir/Epetra_CrsGraph.cpp.o CMakeFiles/epetra.dir/Epetra_CrsGraphData.cpp.o CMakeFiles/epetra.dir/Epetra_CrsMatrix.cpp.o CMakeFiles/epetra.dir/Epetra_CrsSingletonFilter.cpp.o CMakeFiles/epetra.dir/Epetra_Data.cpp.o CMakeFiles/epetra.dir/Epetra_DistObject.cpp.o CMakeFiles/epetra.dir/Epetra_Export.cpp.o CMakeFiles/epetra.dir/Epetra_FECrsGraph.cpp.o CMakeFiles/epetra.dir/Epetra_FECrsMatrix.cpp.o CMakeFiles/epetra.dir/Epetra_FEVbrMatrix.cpp.o CMakeFiles/epetra.dir/Epetra_FEVector.cpp.o CMakeFiles/epetra.dir/Epetra_Flops.cpp.o CMakeFiles/epetra.dir/Epetra_Fortran_wrappers.cpp.o CMakeFiles/epetra.dir/Epetra_Import.cpp.o CMakeFiles/epetra.dir/Epetra_Import_Util.cpp.o CMakeFiles/epetra.dir/Epetra_IntSerialDenseMatrix.cpp.o CMakeFiles/epetra.dir/Epetra_IntSerialDenseVector.cpp.o CMakeFiles/epetra.dir/Epetra_IntVector.cpp.o CMakeFiles/epetra.dir/Epetra_JadMatrix.cpp.o CMakeFiles/epetra.dir/Epetra_LAPACK.cpp.o CMakeFiles/epetra.dir/Epetra_LinearProblem.cpp.o CMakeFiles/epetra.dir/Epetra_LocalMap.cpp.o CMakeFiles/epetra.dir/Epetra_Map.cpp.o CMakeFiles/epetra.dir/Epetra_MapColoring.cpp.o CMakeFiles/epetra.dir/Epetra_MultiVector.cpp.o CMakeFiles/epetra.dir/Epetra_Object.cpp.o CMakeFiles/epetra.dir/Epetra_OffsetIndex.cpp.o CMakeFiles/epetra.dir/Epetra_RowMatrixTransposer.cpp.o CMakeFiles/epetra.dir/Epetra_SerialComm.cpp.o CMakeFiles/epetra.dir/Epetra_SerialCommData.cpp.o CMakeFiles/epetra.dir/Epetra_SerialDenseMatrix.cpp.o CMakeFiles/epetra.dir/Epetra_SerialDenseSVD.cpp.o CMakeFiles/epetra.dir/Epetra_SerialDenseSolver.cpp.o CMakeFiles/epetra.dir/Epetra_SerialDenseVector.cpp.o CMakeFiles/epetra.dir/Epetra_SerialDistributor.cpp.o CMakeFiles/epetra.dir/Epetra_SerialSpdDenseSolver.cpp.o CMakeFiles/epetra.dir/Epetra_SerialSymDenseMatrix.cpp.o CMakeFiles/epetra.dir/Epetra_Time.cpp.o CMakeFiles/epetra.dir/Epetra_Util.cpp.o CMakeFiles/epetra.dir/Epetra_VbrMatrix.cpp.o CMakeFiles/epetra.dir/Epetra_Vector.cpp.o CMakeFiles/epetra.dir/Epetra_LongLongSerialDenseMatrix.cpp.o CMakeFiles/epetra.dir/Epetra_LongLongSerialDenseVector.cpp.o CMakeFiles/epetra.dir/Epetra_LongLongVector.cpp.o CMakeFiles/epetra.dir/Epetra_dcrsmm.f.o CMakeFiles/epetra.dir/Epetra_dcrsmv.f.o CMakeFiles/epetra.dir/Epetra_dcrssm.f.o CMakeFiles/epetra.dir/Epetra_dcrssv.f.o CMakeFiles/epetra.dir/Epetra_MpiComm.cpp.o CMakeFiles/epetra.dir/Epetra_MpiCommData.cpp.o CMakeFiles/epetra.dir/Epetra_MpiDistributor.cpp.o -L/usr/local/Cellar/gcc/4.9.2/lib/gcc/x86_64-apple-darwin14.0.0/4.9.2 -L/usr/local/Cellar/gcc/4.9.2/lib ../../teuchos/remainder/src/libteuchosremainder.11.12.1.dylib ../../teuchos/numerics/src/libteuchosnumerics.11.12.1.dylib ../../teuchos/comm/src/libteuchoscomm.11.12.1.dylib ../../teuchos/parameterlist/src/libteuchosparameterlist.11.12.1.dylib ../../teuchos/core/src/libteuchoscore.11.12.1.dylib /usr/lib/liblapack.dylib /usr/lib/libblas.dylib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lquadmath -lm
>>>>>> Undefined symbols for architecture x86_64:
>>>>>> "_epetra_dcrsmm__", referenced from:
>>>>>> Epetra_CrsMatrix::GeneralMM(double**, int, double**, int, int) const in Epetra_CrsMatrix.cpp.o
>>>>>> Epetra_CrsMatrix::GeneralMTM(double**, int, double**, int, int) const in Epetra_CrsMatrix.cpp.o
>>>>>> "_epetra_dcrsmv__", referenced from:
>>>>>> Epetra_CrsMatrix::GeneralMTV(double*, double*) const in Epetra_CrsMatrix.cpp.o
>>>>>> "_epetra_dcrssm__", referenced from:
>>>>>> Epetra_CrsMatrix::GeneralSM(bool, bool, bool, double**, int, double**, int, int) const in Epetra_CrsMatrix.cpp.o
>>>>>> "_epetra_dcrssv__", referenced from:
>>>>>> Epetra_CrsMatrix::GeneralSV(bool, bool, bool, double*, double*) const in Epetra_CrsMatrix.cpp.o
>>>>>> ld: symbol(s) not found for architecture x86_64
>>>>>> clang: error: linker command failed with exit code 1 (use -v to see invocation)
>>>>>>
>>>>>> do-configure script:
>>>>>> rm -f CMakeCache.txt
>>>>>>
>>>>>> cmake \
>>>>>> -D Trilinos_WARNINGS_AS_ERRORS_FLAGS:STRING="" \
>>>>>> -D TPL_ENABLE_MPI:BOOL=ON \
>>>>>> -D TPL_ENABLE_MUMPS:STRING=ON \
>>>>>> -D MUMPS_LIBRARY_DIRS:FILEPATH=/Users/nroberts/src/MUMPS_4.9.2/lib/ \
>>>>>> -D MUMPS_LIBRARY_NAMES:STRING="dmumps; pord; mumps_common" \
>>>>>> -D TPL_MUMPS_INCLUDE_DIRS:FILEPATH=/Users/nroberts/lib/mumps-4.9.2/include \
>>>>>> -D CMAKE_CXX_COMPILER:FILEPATH=/Users/nroberts/lib/openmpi-1.8.3/bin/mpicxx \
>>>>>> -D CMAKE_C_COMPILER:FILEPATH=/Users/nroberts/lib/openmpi-1.8.3/bin/mpicc \
>>>>>> -D CMAKE_Fortran_COMPILER:FILEPATH=/Users/nroberts/lib/openmpi-1.8.3/bin/mpif90 \
>>>>>> -D SWIG_EXECUTABLE:PATH=/Users/nroberts/lib/swig-3.0.2/bin/swig \
>>>>>> -D Trilinos_SKIP_FORTRANCINTERFACE_VERIFY_TEST:BOOL=ON \
>>>>>> -D MPI_BASE_DIR:PATH=/Users/nroberts/lib/openmpi-1.8.3 \
>>>>>> -D HAVE_GCC_ABI_DEMANGLE:BOOL=ON \
>>>>>> -D DART_TESTING_TIMEOUT:STRING=600 \
>>>>>> -D CMAKE_VERBOSE_MAKEFILE:BOOL=TRUE \
>>>>>> -D BUILD_SHARED_LIBS:BOOL=ON \
>>>>>> -D Trilinos_ENABLE_Anasazi:BOOL=ON \
>>>>>> -D Trilinos_ENABLE_Belos:BOOL=ON \
>>>>>> -D Trilinos_ENABLE_Intrepid:BOOL=ON \
>>>>>> -D Trilinos_ENABLE_Sacado:BOOL=ON \
>>>>>> -D Trilinos_ENABLE_Epetra:BOOL=ON \
>>>>>> -D Trilinos_ENABLE_EpetraExt:BOOL=ON \
>>>>>> -D Trilinos_ENABLE_Teuchos:BOOL=ON \
>>>>>> -D Trilinos_ENABLE_Shards:BOOL=ON \
>>>>>> -D Trilinos_ENABLE_Amesos:BOOL=ON \
>>>>>> -D Trilinos_ENABLE_PyTrilinos:BOOL=ON \
>>>>>> -D Trilinos_ENABLE_Zoltan:BOOL=ON \
>>>>>> -D Trilinos_ENABLE_ML:BOOL=ON \
>>>>>> -D Trilinos_ENABLE_TESTS:BOOL=OFF
>>>>>> \
>>>>>> -D TPL_ENABLE_HDF5:STRING=ON \
>>>>>> -D Trilinos_EXTRA_LINK_FLAGS:STRING="libz.dylib" \
>>>>>> -D TPL_ENABLE_Zlib:BOOL=ON \
>>>>>> -D HDF5_LIBRARY_DIRS:FILEPATH=/Users/nroberts/lib/hdf5/lib \
>>>>>> -D HDF5_LIBRARY_NAMES:STRING="hdf5" \
>>>>>> -D TPL_HDF5_INCLUDE_DIRS:FILEPATH=/Users/nroberts/lib/hdf5/include \
>>>>>> -D EpetraExt_USING_HDF5:BOOL=ON \
>>>>>> -DTPL_ENABLE_Netcdf=OFF \
>>>>>> -DTPL_ENABLE_GLM=OFF \
>>>>>> -DTrilinos_ASSERT_MISSING_PACKAGES=OFF \
>>>>>> -D CMAKE_INSTALL_PREFIX:PATH=/Users/nroberts/lib/trilinos/mpi-release-shared/ \
>>>>>> $EXTRA_ARGS \
>>>>>> ../../
>>>>>> _______________________________________________
>>>>>> Trilinos-Users mailing list
>>>>>> Trilinos-Users at software.sandia.gov
>>>>>> https://software.sandia.gov/mailman/listinfo/trilinos-users
>>>>>
>>>>> ** Bill Spotz **
>>>>> ** Sandia National Laboratories Voice: (505)845-0170 **
>>>>> ** P.O. Box 5800 Fax: (505)284-0154 **
>>>>> ** Albuquerque, NM 87185-0370 Email: wfspotz at sandia.gov **
>>
>
** Bill Spotz **
** Sandia National Laboratories Voice: (505)845-0170 **
** P.O. Box 5800 Fax: (505)284-0154 **
** Albuquerque, NM 87185-0370 Email: wfspotz at sandia.gov **
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