[Trilinos-Users] [EXTERNAL] error attempting to compile trilinos
Perschbacher, Brent M
bmpersc at sandia.gov
Tue Oct 29 08:07:58 MDT 2013
Riccardo,
This is a particularly subtle issue that is the cause of this. There is an errant "-l" at the end of your link line just before the -Wl,... directive which is telling the compiler that the -Wl,... is a library to link. It looks like the issue is being caused because you have a space in your Trilinos_EXTRA_LINK_FLAGS variable. If you make that the empty string and reconfigure you should be able to build without issue. I will see what we can do in our build system to prevent this from happening in the future.
Brent
From: Riccardo Rossi <rrossi at cimne.upc.edu<mailto:rrossi at cimne.upc.edu>>
Date: Monday, October 28, 2013 1:22 PM
To: "Perschbacher, Brent M" <bmpersc at sandia.gov<mailto:bmpersc at sandia.gov>>
Cc: "trilinos-users at software.sandia.gov<mailto:trilinos-users at software.sandia.gov>" <trilinos-users at software.sandia.gov<mailto:trilinos-users at software.sandia.gov>>
Subject: Re: [EXTERNAL] [Trilinos-Users] error attempting to compile trilinos
Dear Brent,
here comes the output
/usr/bin/ld: cannot find -l-Wl,-rpath,/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/packages/teuchos/core/src
collect2: error: ld returned 1 exit status
make[2]: *** [packages/teuchos/core/test/CommandLineProcessor/TeuchosCore_CommandLineProcessor_test.exe] Error 1
make[1]: *** [packages/teuchos/core/test/CommandLineProcessor/CMakeFiles/TeuchosCore_CommandLineProcessor_test.dir/all] Error 2
make: *** [all] Error 2
ng directory `/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build'
make -f CMakeFiles/last_lib.dir/build.make CMakeFiles/last_lib.dir/depend
make[2]: Entering directory `/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build'
cd /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /home/riccardo/scratch/trilinos-11.4.2-Source /home/riccardo/scratch/trilinos-11.4.2-Source /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/CMakeFiles/last_lib.dir/DependInfo.cmake --color=
Dependee "/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/CMakeFiles/last_lib.dir/DependInfo.cmake" is newer than depender "/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/CMakeFiles/last_lib.dir/depend.internal".
Dependee "/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/CMakeFiles/last_lib.dir/depend.internal".
Scanning dependencies of target last_lib
make[2]: Leaving directory `/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build'
make -f CMakeFiles/last_lib.dir/build.make CMakeFiles/last_lib.dir/build
make[2]: Entering directory `/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build'
/usr/local/bin/cmake -E cmake_progress_report /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/CMakeFiles
[ 0%] Building C object CMakeFiles/last_lib.dir/last_lib_dummy.c.o
/usr/bin/mpicc -O3 -m64 -fPIC -funroll-loops -msse3 -O3 -I/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build -o CMakeFiles/last_lib.dir/last_lib_dummy.c.o -c /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/last_lib_dummy.c
Linking C static library liblast_lib.a
/usr/local/bin/cmake -P CMakeFiles/last_lib.dir/cmake_clean_target.cmake
/usr/local/bin/cmake -E cmake_link_script CMakeFiles/last_lib.dir/link.txt --verbose=1
/usr/bin/ar cr liblast_lib.a CMakeFiles/last_lib.dir/last_lib_dummy.c.o
/usr/bin/ranlib liblast_lib.a
make[2]: Leaving directory `/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build'
/usr/local/bin/cmake -E cmake_progress_report /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/CMakeFiles
[ 0%] Built target last_lib
make -f packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/build.make packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/depend
make[2]: Entering directory `/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build'
cd /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /home/riccardo/scratch/trilinos-11.4.2-Source /home/riccardo/scratch/trilinos-11.4.2-Source/packages/teuchos/core/src /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/packages/teuchos/core/src /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build'
make -f packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/build.make packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/build
make[2]: Entering directory `/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build'
make[2]: Nothing to be done for `packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/build'.
make[2]: Leaving directory `/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build'
/usr/local/bin/cmake -E cmake_progress_report /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/CMakeFiles 78
[ 1%] Built target teuchoscore
make -f packages/teuchos/core/test/CommandLineProcessor/CMakeFiles/TeuchosCore_CommandLineProcessor_test.dir/build.make packages/teuchos/core/test/CommandLineProcessor/CMakeFiles/TeuchosCore_CommandLineProcessor_test.dir/depend
make[2]: Entering directory `/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build'
cd /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /home/riccardo/scratch/trilinos-11.4.2-Source /home/riccardo/scratch/trilinos-11.4.2-Source/packages/teuchos/core/test/CommandLineProcessor /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/packages/teuchos/core/test/CommandLineProcessor /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/packages/teuchos/core/test/CommandLineProcessor/CMakeFiles/TeuchosCore_CommandLineProcessor_test.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build'
make -f packages/teuchos/core/test/CommandLineProcessor/CMakeFiles/TeuchosCore_CommandLineProcessor_test.dir/build.make packages/teuchos/core/test/CommandLineProcessor/CMakeFiles/TeuchosCore_CommandLineProcessor_test.dir/build
make[2]: Entering directory `/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build'
Linking CXX executable TeuchosCore_CommandLineProcessor_test.exe
cd /home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/packages/teuchos/core/test/CommandLineProcessor && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/TeuchosCore_CommandLineProcessor_test.dir/link.txt --verbose=1
/usr/bin/mpiCC -O3 -m64 -fPIC -funroll-loops -msse3 -O3 CMakeFiles/TeuchosCore_CommandLineProcessor_test.dir/cxx_main.cpp.o -o TeuchosCore_CommandLineProcessor_test.exe -rdynamic ../../src/libteuchoscore.so.11.4.2 ../../../../../liblast_lib.a -l -Wl,-rpath,/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/packages/teuchos/core/src
make[2]: Leaving directory `/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build'
make[1]: Leaving directory `/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build'
On Mon, Oct 28, 2013 at 5:49 PM, Perschbacher, Brent M <bmpersc at sandia.gov<mailto:bmpersc at sandia.gov>> wrote:
Riccardo,
Could you run "make VERBOSE=1" and send me the results please? I'll take a look at them to see what the issue might be.
Thanks,
Brent
From: Riccardo Rossi <rrossi at cimne.upc.edu<mailto:rrossi at cimne.upc.edu>>
Date: Saturday, October 26, 2013 3:51 PM
To: "trilinos-users at software.sandia.gov<mailto:trilinos-users at software.sandia.gov>" <trilinos-users at software.sandia.gov<mailto:trilinos-users at software.sandia.gov>>
Subject: [EXTERNAL] [Trilinos-Users] error attempting to compile trilinos
Dear list,
i just downloaded the latest 11.4.2 trilinos and i was trying to compile it.
I attach the configure file i am using.
the error i get follows at the end of the email
please note that without tests compilation is correct and the code works, at least for Amesos, AztecOO and ML.
thank you in advance for any suggestion
Riccardo
riccardo at rrossi-notebook:~/scratch/trilinos-11.4.2-Source/trilinos_build$ make install
[ 0%] Built target last_lib
[ 0%] Building CXX object packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/Teuchos_Time.cpp.o
[ 0%] Building CXX object packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/Teuchos_ArrayView.cpp.o
[ 0%] Building CXX object packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/Teuchos_VerbosityLevel.cpp.o
[ 0%] Building CXX object packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/Teuchos_CommandLineProcessor.cpp.o
[ 0%] Building CXX object packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/Teuchos_Describable.cpp.o
[ 0%] Building CXX object packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/Teuchos_dyn_cast.cpp.o
[ 0%] Building CXX object packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/Teuchos_CWrapperSupport.cpp.o
[ 0%] Building CXX object packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/Teuchos_Ptr.cpp.o
[ 0%] Building CXX object packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/Teuchos_ScalarTraits.cpp.o
[ 0%] Building CXX object packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/Teuchos_VerboseObject.cpp.o
[ 0%] Building CXX object packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/Teuchos_TestForException.cpp.o
[ 0%] Building CXX object packages/teuchos/core/src/CMakeFiles/teuchoscore.dir/Teuchos_TypeNameTraits.cpp.o
Linking CXX shared library libteuchoscore.so
[ 1%] Built target teuchoscore
[ 1%] Building CXX object packages/teuchos/core/test/CommandLineProcessor/CMakeFiles/TeuchosCore_CommandLineProcessor_test.dir/cxx_main.cpp.o
Linking CXX executable TeuchosCore_CommandLineProcessor_test.exe
/usr/bin/ld: cannot find -l-Wl,-rpath,/home/riccardo/scratch/trilinos-11.4.2-Source/trilinos_build/packages/teuchos/core/src
collect2: error: ld returned 1 exit status
make[2]: *** [packages/teuchos/core/test/CommandLineProcessor/TeuchosCore_CommandLineProcessor_test.exe] Error 1
make[1]: *** [packages/teuchos/core/test/CommandLineProcessor/CMakeFiles/TeuchosCore_CommandLineProcessor_test.dir/all] Error 2
make: *** [all] Error 2
--
Dr. Riccardo Rossi, Civil Engineer
Member of Kratos Team
International Center for Numerical Methods in Engineering - CIMNE
Campus Norte, Edificio C1
c/ Gran Capitán s/n
08034 Barcelona, España
Tel: (+34) 93 401 56 96
Fax: (+34) 93.401.6517
web: www.cimne.com<http://www.cimne.com/>
--
Dr. Riccardo Rossi, Civil Engineer
Member of Kratos Team
International Center for Numerical Methods in Engineering - CIMNE
Campus Norte, Edificio C1
c/ Gran Capitán s/n
08034 Barcelona, España
Tel: (+34) 93 401 56 96
Fax: (+34) 93.401.6517
web: www.cimne.com<http://www.cimne.com/>
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