[Trilinos-Users] Trilinos 11.0.3, Unable to compile EpetraExt python wrapper

[John Foster]

I'm know there is an issue with the way SWIG 2.0.9 handles submodules. Revert to 2.0.8 and it might compile. 
—
Sent from Mailbox for iPhone

On Tue, Apr 2, 2013 at 7:06 PM, Paul Rigor <paul.rigor at uci.edu> wrote:

> Hi all,
> Has anyone successfully compiled PyTrilinos (Trilinos 11.0.6) on
> CentOS 6 with swig 2.0.9, cmake 2.8.3, python 2.6.6, g++/gfortran
> 4.4.7?
> When attempting to compile, there's an error with the EpetraExt
> wrappers. I've included the error below the cmake call. Please let me
> know if I've missed something.
> Thanks for your time!
> Paul
> ==cmake config==
> This call is made in a child folder underneath the source tree.
> cmake -D Trilinos_ENABLE_OPTIONAL_PACKAGES:BOOL=ON \
> -D Trilinos_ENABLE_Sacado:BOOL=ON \
> -D Trilinos_ENABLE_Stratimikos:BOOL=ON \
> -D CMAKE_BUILD_TYPE:STRING=RELEASE \
> -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON \
> -D Trilinos_VERBOSE_CONFIGURE:BOOL=ON \
> -D TPL_ENABLE_MPI:BOOL=ON \
> -D CMAKE_INSTALL_PREFIX:PATH=$TRILINOS \
> -D Trilinos_ENABLE_PyTrilinos:BOOL=ON \
> -D Trilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON \
> -D BUILD_SHARED_LIBS:BOOL=ON `pwd`/..
> ==Error==
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:
> In function ‘PyObject* _wrap_CrsGraph_MapColoring___call__(PyObject*,
> PyObject*)’:
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9273:
> error: ‘arg2’ declared as reference but not initialized
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9280:
> error: ‘result’ declared as reference but not initialized
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9296:
> error: cannot declare pointer to ‘class Epetra_CrsGraph&’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9296:
> error: cannot declare pointer to ‘class Epetra_CrsGraph&’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/packages/epetra/src/Epetra_MapColoring.h:313:
> error: ‘Epetra_MapColoring& Epetra_MapColoring::operator=(const
> Epetra_MapColoring&)’ is private
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9304:
> error: within this context
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9341:
> error: cannot declare reference to ‘class Epetra_MapColoring&’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9341:
> error: new cannot be applied to a reference type
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:
> In function ‘PyObject*
> _wrap_CrsGraph_MapColoringIndex___call__(PyObject*, PyObject*)’:
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9492:
> error: ‘OriginalTypeRef’ was not declared in this scope
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9492:
> error: expected ‘;’ before ‘arg2’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9499:
> error: ‘NewTypeRef’ was not declared in this scope
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9499:
> error: expected ‘;’ before ‘result’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9515:
> error: ‘temp’ was not declared in this scope
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9515:
> error: expected type-specifier before ‘OriginalTypeRef’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9515:
> error: expected ‘>’ before ‘OriginalTypeRef’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9515:
> error: expected ‘(’ before ‘OriginalTypeRef’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9515:
> error: expected primary-expression before ‘>’ token
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9515:
> error: expected ‘)’ before ‘;’ token
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9516:
> error: ‘arg2’ was not declared in this scope
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9517:
> error: type ‘<type error>’ argument given to ‘delete’, expected
> pointer
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9523:
> error: ‘result’ was not declared in this scope
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9523:
> error: ‘arg2’ was not declared in this scope
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9560:
> error: expected type-specifier before ‘NewTypeRef’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9560:
> error: expected ‘)’ before ‘NewTypeRef’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9560:
> error: expected ‘)’ before ‘;’ token
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:
> In function ‘PyObject* _wrap_CrsMatrix_SubCopy___call__(PyObject*,
> PyObject*)’:
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12837:
> error: ‘OriginalTypeRef’ was not declared in this scope
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12837:
> error: expected ‘;’ before ‘arg2’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12844:
> error: ‘NewTypeRef’ was not declared in this scope
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12844:
> error: expected ‘;’ before ‘result’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12860:
> error: ‘temp’ was not declared in this scope
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12860:
> error: expected type-specifier before ‘OriginalTypeRef’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12860:
> error: expected ‘>’ before ‘OriginalTypeRef’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12860:
> error: expected ‘(’ before ‘OriginalTypeRef’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12860:
> error: expected primary-expression before ‘>’ token
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12860:
> error: expected ‘)’ before ‘;’ token
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12861:
> error: ‘arg2’ was not declared in this scope
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12862:
> error: type ‘<type error>’ argument given to ‘delete’, expected
> pointer
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12868:
> error: ‘result’ was not declared in this scope
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12868:
> error: ‘arg2’ was not declared in this scope
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12905:
> error: expected type-specifier before ‘NewTypeRef’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12905:
> error: expected ‘)’ before ‘NewTypeRef’
> /home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12905:
> error: expected ‘)’ before ‘;’ token
> make[2]: *** [packages/PyTrilinos/src/CMakeFiles/EpetraExt.dir/EpetraExtPYTHON_wrap.cpp.o]
> Error 1
> make[2]: Leaving directory
> `/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py'
> make[1]: *** [packages/PyTrilinos/src/CMakeFiles/EpetraExt.dir/all] Error 2
> make[1]: Leaving directory
> `/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py'
> make: *** [all] Error 2
> --
> Paul Rigor
> http://www.ics.uci.edu/~prigor
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> Trilinos-Users at software.sandia.gov
> http://software.sandia.gov/mailman/listinfo/trilinos-users
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