[Trilinos-Users] Trilinos 11.0.3, Unable to compile EpetraExt python wrapper

[Paul Rigor]

Hi all,

Has anyone successfully compiled PyTrilinos (Trilinos 11.0.6) on
CentOS 6 with swig 2.0.9, cmake 2.8.3, python 2.6.6, g++/gfortran
4.4.7?

When attempting to compile, there's an error with the EpetraExt
wrappers. I've included the error below the cmake call. Please let me
know if I've missed something.

Thanks for your time!
Paul


==cmake config==

This call is made in a child folder underneath the source tree.

cmake -D Trilinos_ENABLE_OPTIONAL_PACKAGES:BOOL=ON \
-D Trilinos_ENABLE_Sacado:BOOL=ON \
-D Trilinos_ENABLE_Stratimikos:BOOL=ON \
-D CMAKE_BUILD_TYPE:STRING=RELEASE \
-D CMAKE_VERBOSE_MAKEFILE:BOOL=ON \
-D Trilinos_VERBOSE_CONFIGURE:BOOL=ON \
-D TPL_ENABLE_MPI:BOOL=ON \
-D CMAKE_INSTALL_PREFIX:PATH=$TRILINOS \
-D Trilinos_ENABLE_PyTrilinos:BOOL=ON \
-D Trilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON \
-D BUILD_SHARED_LIBS:BOOL=ON `pwd`/..



==Error==
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:
In function ‘PyObject* _wrap_CrsGraph_MapColoring___call__(PyObject*,
PyObject*)’:
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9273:
error: ‘arg2’ declared as reference but not initialized
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9280:
error: ‘result’ declared as reference but not initialized
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9296:
error: cannot declare pointer to ‘class Epetra_CrsGraph&’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9296:
error: cannot declare pointer to ‘class Epetra_CrsGraph&’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/packages/epetra/src/Epetra_MapColoring.h:313:
error: ‘Epetra_MapColoring& Epetra_MapColoring::operator=(const
Epetra_MapColoring&)’ is private
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9304:
error: within this context
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9341:
error: cannot declare reference to ‘class Epetra_MapColoring&’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9341:
error: new cannot be applied to a reference type
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:
In function ‘PyObject*
_wrap_CrsGraph_MapColoringIndex___call__(PyObject*, PyObject*)’:
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9492:
error: ‘OriginalTypeRef’ was not declared in this scope
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9492:
error: expected ‘;’ before ‘arg2’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9499:
error: ‘NewTypeRef’ was not declared in this scope
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9499:
error: expected ‘;’ before ‘result’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9515:
error: ‘temp’ was not declared in this scope
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9515:
error: expected type-specifier before ‘OriginalTypeRef’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9515:
error: expected ‘>’ before ‘OriginalTypeRef’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9515:
error: expected ‘(’ before ‘OriginalTypeRef’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9515:
error: expected primary-expression before ‘>’ token
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9515:
error: expected ‘)’ before ‘;’ token
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9516:
error: ‘arg2’ was not declared in this scope
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9517:
error: type ‘<type error>’ argument given to ‘delete’, expected
pointer
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9523:
error: ‘result’ was not declared in this scope
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9523:
error: ‘arg2’ was not declared in this scope
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9560:
error: expected type-specifier before ‘NewTypeRef’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9560:
error: expected ‘)’ before ‘NewTypeRef’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9560:
error: expected ‘)’ before ‘;’ token
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:
In function ‘PyObject* _wrap_CrsMatrix_SubCopy___call__(PyObject*,
PyObject*)’:
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12837:
error: ‘OriginalTypeRef’ was not declared in this scope
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12837:
error: expected ‘;’ before ‘arg2’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12844:
error: ‘NewTypeRef’ was not declared in this scope
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12844:
error: expected ‘;’ before ‘result’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12860:
error: ‘temp’ was not declared in this scope
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12860:
error: expected type-specifier before ‘OriginalTypeRef’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12860:
error: expected ‘>’ before ‘OriginalTypeRef’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12860:
error: expected ‘(’ before ‘OriginalTypeRef’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12860:
error: expected primary-expression before ‘>’ token
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12860:
error: expected ‘)’ before ‘;’ token
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12861:
error: ‘arg2’ was not declared in this scope
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12862:
error: type ‘<type error>’ argument given to ‘delete’, expected
pointer
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12868:
error: ‘result’ was not declared in this scope
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12868:
error: ‘arg2’ was not declared in this scope
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12905:
error: expected type-specifier before ‘NewTypeRef’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12905:
error: expected ‘)’ before ‘NewTypeRef’
/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:12905:
error: expected ‘)’ before ‘;’ token
make[2]: *** [packages/PyTrilinos/src/CMakeFiles/EpetraExt.dir/EpetraExtPYTHON_wrap.cpp.o]
Error 1
make[2]: Leaving directory
`/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py'
make[1]: *** [packages/PyTrilinos/src/CMakeFiles/EpetraExt.dir/all] Error 2
make[1]: Leaving directory
`/home/workspace/scratch/trilinos/trilinos-11.0.3-Source/build-py'
make: *** [all] Error 2

--
Paul Rigor
http://www.ics.uci.edu/~prigor