[Trilinos-Users] gcc 4.7 compile error for zoltan package
Andrey Prokopenko
prok12358 at gmail.com
Mon Aug 27 11:30:22 MDT 2012
Hi Ross,
I'm getting the following:
/usr/bin/mpicc -Dzoltan_EXPORTS -ansi -pedantic -Wall -Wno-long-long
-fopenmp -O3 -fPIC <-I...> -c murmur3.c
I'm not sure where does it come from. grep points to
tribits/package_arch, though.
Also, it uses __attribute__ which is a GNU extension. I think Intel
compiler supports that but I am curious whether MS compiler supports
it
Andrey
On Mon, Aug 27, 2012 at 10:44 AM, Bartlett, Roscoe A.
<bartlettra at ornl.gov> wrote:
> Andre,
>
> The flag -ansi should not be added to the compile line in a release of Trilinos (only in the development mode which should not be the default). Can you cd into the directory and type 'make VERBOSE=1 <the target>' and see what compile options it is showing? What is your configure line? What Trilinos release version is this?
>
> Otherwise, I believe that Trilinos does not assume the C99 standard, only the C89/C90 standard, so such code would have to be changed or be explicitly dependent on a C99 enable flag or something. Trilinos needs a more clear policy on assumed C standards and a clear way to allow some code to require (or be conditionally enabled) for the C99 standard.
>
> -Ross
>
> Dr. Roscoe A. Bartlett, PhD
> Oak Ridge National Laboratories
> Trilinos Software Engineering Technologies and Integration Lead
> CASL Virtual Reactor Software Engineering Lead
>
>
>
>> -----Original Message-----
>> From: trilinos-users-bounces at software.sandia.gov [mailto:trilinos-users-
>> bounces at software.sandia.gov] On Behalf Of Andrey Prokopenko
>> Sent: Sunday, August 26, 2012 9:08 PM
>> To: Andre Massing
>> Cc: trilinos-users at software.sandia.gov
>> Subject: Re: [Trilinos-Users] gcc 4.7 compile error for zoltan package
>>
>> Hi,
>>
>> I've also bumped into it, and also cannot access bugzilla. Some search
>> showed that one of the problems was that you actually need to add
>> inline keyword like
>> inline __attribute__((always_inline))
>>
>> But it seems that you cannot do that because you need at least C99 for
>> inline keyword, but some configs in CMake or Makefile.am cause the
>> code to be compiled -ansi, or -c90. The code in question seems to be
>> in public domain, but I'm not sure about how easy is to modify it and
>> what are the issues related to copyright. The easiest thing would be
>> to require gcc < 4.7, or removed -ansi for compilation.
>>
>> On Sun, Aug 26, 2012 at 4:57 PM, Andre Massing <massing at simula.no>
>> wrote:
>> > -----BEGIN PGP SIGNED MESSAGE-----
>> > Hash: SHA1
>> >
>> > Hi!
>> >
>> > On 08/27/2012 12:41 AM, Nico Schlömer wrote:
>> >> Hi Andre,
>> >>
>> >> are you compiling shared libraries? I bumped into the same issue
>> >> this weekend with GCC 4.7.
>> >
>> > Yes, that happened when I compiled the shared libraries.
>> >
>> >> The bug is registered at
>> >> https://software.sandia.gov/bugzilla/show_bug.cgi?id=5680 where I
>> >> also submitted a patch, so I suppose it won't take long until this
>> >> is fixed.
>> >
>> > Many thanks for the pointer to the bug report! Unfortunately I cannot
>> > read it since I haven't a bugzilla account yet, but I will try to ask
>> > for one. Good to know that the problem has been reported already.
>> >
>> > Best,
>> > Andre
>> >
>> >>
>> >> --Nico
>> >>
>> >>
>> >> On Mon, Aug 27, 2012 at 12:25 AM, Andre Massing <massing at simula.no>
>> >> wrote:
>> >>> Hi!
>> >>>
>> >>> I just tried to compile some of the newest trilinos packages and
>> >>> got the following compile error when zoltan was compiled on a
>> >>> Fedora 17 system using the gcc 4.7 compiler (after defining the
>> >>> FORCE_INLINE macro in the zoltan source, the package compiles
>> >>> fine, but I unsure what a proper fix should look like):
>> >>>
>> >>> [ 27%] Building C object
>> >>> packages/zoltan/src/CMakeFiles/zoltan.dir/zz/murmur3.c.o
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
>> >>>
>> >>>
>> > warning: always_inline function might not be inlinable [-Wattributes]
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:45:41:
>> >>>
>> >>>
>> > warning: always_inline function might not be inlinable [-Wattributes]
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
>> >>>
>> >>>
>> > In function ?MurmurHash3_x86_32?:
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:45:41:
>> >>>
>> >>>
>> > error: inlining failed in call to always_inline ?fmix32?: function
>> >>> body can be overwritten at link time
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:121:6:
>> >>>
>> >>>
>> > error: called from here
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
>> >>>
>> >>>
>> > In function ?MurmurHash3_x86_128?:
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
>> >>>
>> >>>
>> > error: inlining failed in call to always_inline ?fmix64?: function
>> >>> body can be overwritten at link time
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:218:14:
>> >>>
>> >>>
>> > error: called from here
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
>> >>>
>> >>>
>> > error: inlining failed in call to always_inline ?fmix64?: function
>> >>> body can be overwritten at link time
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:219:14:
>> >>>
>> >>>
>> > error: called from here
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
>> >>>
>> >>>
>> > error: inlining failed in call to always_inline ?fmix64?: function
>> >>> body can be overwritten at link time
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:220:14:
>> >>>
>> >>>
>> > error: called from here
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
>> >>>
>> >>>
>> > error: inlining failed in call to always_inline ?fmix64?: function
>> >>> body can be overwritten at link time
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:221:14:
>> >>>
>> >>>
>> > error: called from here
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:
>> >>>
>> >>>
>> > In function ?MurmurHash3_x64_128?:
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
>> >>>
>> >>>
>> > error: inlining failed in call to always_inline ?fmix64?: function
>> >>> body can be overwritten at link time
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:304:6:
>> >>>
>> >>>
>> > error: called from here
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:58:41:
>> >>>
>> >>>
>> > error: inlining failed in call to always_inline ?fmix64?: function
>> >>> body can be overwritten at link time
>> >>> /home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/packages/zoltan/src/zz/murmur3.c:305:6:
>> >>>
>> >>>
>> > error: called from here
>> >>> make[2]: ***
>> >>> [packages/zoltan/src/CMakeFiles/zoltan.dir/zz/murmur3.c.o] Error
>> >>> 1 make[2]: Leaving directory
>> >>> `/home/andre/Work/software/FEniCS-dependencies/tmp/src/trilinos-
>> 10.12.2-Source/dorsal_build_dir'
>> >>>
>> >>>
>> > make[1]: *** [packages/zoltan/src/CMakeFiles/zoltan.dir/all] Error 2
>> >>>
>> >>>
>> >>> _______________________________________________ Trilinos-
>> Users
>> >>> mailing list Trilinos-Users at software.sandia.gov
>> >>> http://software.sandia.gov/mailman/listinfo/trilinos-users
>> >>>
>> > -----BEGIN PGP SIGNATURE-----
>> > Version: GnuPG v1.4.12 (GNU/Linux)
>> > Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
>> >
>> >
>> iQEcBAEBAgAGBQJQOqnlAAoJEA79ggnbq9dmPukH/2EcEIYgymQIhrtT7TEC75
>> mI
>> >
>> nfgXEMBQXFtrE9FnAuQjbolRub451eohg2+xTI12wkF60jgNUoxl3RhDxMrrjlrS
>> >
>> 9EYy1/kxv3m4tP2Mm8PV0WCPwE5ac3XX/qfJ6+poVGqIJy+8xugxjMCnfrfxv7
>> Lq
>> >
>> UbK3ryReHy/CZ2zLIReG+qcEVVEpv9HOeNP8Oemj050/2SdzU2sCUvHrWBQ7j
>> P/3
>> >
>> nK+P4GQMKdgxz5/XljseqldPI7wqE3O/QE5hyG91UuD4fsTSsfh7fOEtPITjtfGP
>> >
>> 07M31xLtcLChI6w3ZdArV/+3HvPJAz0Yse7zVnvkFd3U0wbMQB/Sl9g7S8ag4ro
>> =
>> > =lBif
>> > -----END PGP SIGNATURE-----
>> >
>> >
>> > _______________________________________________
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>> >
>>
>>
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