[Trilinos-Users] Problems with trilinos install

[Brian Smith]

I think I have resolved the problem.  Ron Green, after I asked whether there 
were environmental variables to set other than the one
recommended by their web advisor (which turned out to be misspelled by the 
web advisor tool) told me to source the file iccvars.sh in
one of the Intel bin directories. I reran the make after correcting the web 
advisor's recommendation and sourcing iccvars.sh and it now is building lots 
of stuff -- it still warns about a flag -fstd=C99 as not a valid option to 
icpc and I have no idea where that is coming from.

Thanks for your help with this -- I may be back but it appears to be working 
away at the Trilinos make.

----- Original Message ----- 
From: "Baker, Christopher G." <bakercg at ornl.gov>
To: "Brian Smith" <carbess at swcp.com>; <trilinos-users at software.sandia.gov>
Cc: "Gerald F Kiuttu" <gerald.kiuttu at accuratesolutionsap.com>; "Heroux, 
Michael A" <maherou at sandia.gov>
Sent: Thursday, October 28, 2010 12:36 PM
Subject: Re: [Trilinos-Users] Problems with trilinos install


Hi Brian,

When I link against a shared-memory-parallel MKL using Intel compilers, I 
use the following (I don't seem to need -lguide):
  -D 
TPL_BLAS_LIBRARIES="-L${MKL_BASE_DIR}/lib/em64t -lmkl_intel_lp64 -lmkl_intel_thread 
 -lmkl_core -liomp5 -lpthread"
  -D 
TPL_LAPACK_LIBRARIES="-L${MKL_BASE_DIR}/lib/em64t -lmkl_intel_lp64 -lmkl_intel_thread 
 -lmkl_core -liomp5 -lpthread"

In your case, MKL_BASE_DIR is /opt/intel/Compiler/11.1/072/mkl, so that 
those commands will says -L/opt/intel/Compiler/11.1/072/mkl/lib/em64t

Watch the output from the cmake command (near the end, when processing 
teuchos). If one of CXX_COMPLEX_BLAS_WORKS or 
HAVE_FIXABLE_COMPLEX_BLAS_PROBLEM, then there is a problem with the 
BLAS/LAPACK linking that will manifest itself later when linking or 
executing.

If this doesn't work, send me your CMakeFiles/CMakeError.log.

Chris


On 10/28/10 2:46 PM, "Brian Smith" <carbess at swcp.com> wrote:

I have been communicating with Mike Heroux and asking his help in installing 
trilinos.  I have gotten help with my first problem from
Ron Green of Intel (undefined external  __builtin_isnan resolved by adding 
the --std=C99 flag to the C and C++ compilers) but now I am
getting what looks to me a problem with specifying the -lmkl_intel_lp64 
flag -- does it have to be in a different place in the d-configure
script?  Anyway, as a text attachment, I have stated the problem and given 
all the files and associated evidence of my problem.

I would certainly appreciate any suggestion you have.  I am installing 
Trilinos on an Intel QuadCore processor with the Intel compiler suite and
mkl libraries.