[Trilinos-Users] Building Zoltan in trilinos-9.0.0

Deji Akingunola deji.aking at gmail.com
Tue Sep 30 08:46:27 MDT 2008


Hi,

Have anyone been able to build zoltan within trilinos-9.0.0? There
seems to be a problem with the makefile causing the zoltan library not
to be built. Relevant portion of the build log and the configure log
is reproduced below.

Deji

...build..
Trilinos package kokkos built successfully
make[4]: Leaving directory
`/home/deji/rpmbuild/BUILD/trilinos-9.0.0/packages/kokkos'
make[3]: Leaving directory
`/home/deji/rpmbuild/BUILD/trilinos-9.0.0/packages/kokkos'
Making all in zoltan
make[3]: Entering directory
`/home/deji/rpmbuild/BUILD/trilinos-9.0.0/packages/zoltan'
Making all in src
make[4]: Entering directory
`/home/deji/rpmbuild/BUILD/trilinos-9.0.0/packages/zoltan/src'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory
`/home/deji/rpmbuild/BUILD/trilinos-9.0.0/packages/zoltan/src'
make[4]: Entering directory
`/home/deji/rpmbuild/BUILD/trilinos-9.0.0/packages/zoltan'

Trilinos package zoltan built successfully.
...

...configure log ...
----------------------------------------
Finished Running WebTrilinos Configure Script
----------------------------------------
=== configuring in packages/zoltan
(/home/deji/rpmbuild/BUILD/trilinos-9.0.0/packages/zoltan)
configure: running /bin/sh ./configure '--prefix=/usr'
'--build=x86_64-redhat-linux-gnu' '--host=x86_64-redhat-linux-gnu'
'--target=x86_64-redhat-linux-gnu' '--program-prefix='
'--exec-prefix=/usr' '--bindir=/usr/bin' '--sbindir=/usr/sbin'
'--sysconfdir=/etc' '--datadir=/usr/share' '--includedir=/usr/include'
'--libdir=/usr/lib64' '--libexecdir=/usr/libexec'
'--localstatedir=/var' '--sharedstatedir=/usr/com'
'--mandir=/usr/share/man' '--infodir=/usr/share/info'
'--enable-pytrilinos' 'F77=mpif77' 'F90=mpif90' 'CFLAGS=-fPIC -O2 -g
-pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic' 'CXXFLAGS=-fPIC -O2 -g
-pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic' 'FFLAGS=-fPIC -O2 -g
-pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic'
'--with-libs=-L/usr/lib64/atlas -lmpiblacs -lmpiblacsCinit -lscalapack
-lblas -llapack -latlas' '--enable-mpi' '--with-mpi-compilers'
'--enable-epetra' '--enable-teuchos' '--enable-teuchos-expat'
'--enable-teuchos-libxml2' '--enable-teuchos-extended'
'--enable-teuchos-complex' '--enable-triutils' '--enable-aztecoo'
'--enable-ifpack' '--enable-epetraext' '--enable-amesos'
'--enable-amesos-scalapack' '--enable-didasko' '--enable-ml'
'--enable-anasazi' '--enable-galeri' '--enable-nox'
'--enable-nox-lapack' '--enable-nox-epetra' '--enable-nox-loca'
'--with-loca-anasazi' '--enable-thyra' '--enable-belos'
'--enable-isorropia' '--enable-kokkos' '--enable-komplex'
'--enable-meros' '--enable-moertel' '--enable-moocho'
'--enable-pliris' '--enable-rtop' '--enable-rythmos' '--enable-sacado'
'--enable-stratimikos' '--enable-fei' '--enable-phalanx'
'--enable-phdmesh' '--enable-sundance' '--enable-pamgen'
'--enable-threadpool' '--enable-zoltan' '--with-scotch'
'--with-scotch-incdir=/usr/include' '--with-scotch-libdir=/usr/lib64'
'--enable-trilinoscouplings' '--enable-webtrilinos' '--with-gnumake'
'--with-ldflags=-fPIC' '--disable-tests'
'--includedir=/usr/include/trilinos' '--libdir=/usr/lib64/trilinos'
'--datadir=/usr/share/trilinos'
'--with-execincludedir=/usr/include/trilinos'
'--with-install=/usr/bin/install -p'
'build_alias=x86_64-redhat-linux-gnu'
'host_alias=x86_64-redhat-linux-gnu'
'target_alias=x86_64-redhat-linux-gnu' '--with-trilinos'
'--enable-new_package' '--enable-shared' --cache-file=/dev/null
--srcdir=.
----------------------------------------
Running Zoltan Configure Script
----------------------------------------
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking target system type... x86_64-redhat-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -p
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking how to create a ustar tar archive... gnutar
checking whether to use fortran... no
checking whether to use zoltan-cppdriver... yes
checking for mpicxx... mpicxx
checking whether we are using MPI... yes
checking for mpicxx... yes
checking for mpicc... yes
checking for x86_64-redhat-linux-gnu-cc... mpicc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of mpicc... gcc3
checking whether we are using the GNU C++ compiler... yes
checking whether mpicxx accepts -g... yes
checking dependency style of mpicxx... gcc3
checking for x86_64-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking whether additional CCFLAGS flags should be added... no
checking whether additional CXXFLAGS flags should be added... no
checking whether additional CFLAGS flags should be added... no
checking whether additional FFLAGS flags should be added... no
checking whether additional libraries are needed... LIBS =
-L/usr/lib64/atlas -lmpiblacs -lmpiblacsCinit -lscalapack -lblas
-llapack -latlas
checking whether additional LDFLAGS flags should be added... LDFLAGS = -fPIC
checking for special archiver command... none
checking how to run the C++ preprocessor... mpicxx -E
checking for mpi.h... yes
checking whether to build export makefiles... yes
checking for perl... yes
checking whether gnumake specific code should be enabled... yes
checking whether to use octreepartitioning... no
checking whether to use parmetis... no
checking whether to use scotch... yes
checking whether to use patoh... no
checking whether to use drum... no
checking whether to use nemesis_exodus... no
checking whether to use tests... no
checking whether to use zoltan-tests... no
checking whether to use examples... yes
checking whether to use zoltan-examples... yes
checking whether additional library search paths defined... no
checking whether additional include search paths defined... no
checking how to get verbose linking output from mpif77... -v
checking for Fortran 77 libraries of mpif77...  -L/usr/lib64
-L/usr/lib64/atlas -L/usr/lib64/openmpi/1.2.4-gcc
-L/usr/lib/gcc/x86_64-redhat-linux/4.3.2
-L/usr/lib/gcc/x86_64-redhat-linux/4.3.2/../../../../lib64
-L/lib/../lib64 -L/usr/lib/../lib64
-L/usr/lib/gcc/x86_64-redhat-linux/4.3.2/../../.. -lptscotch -lscotch
-lscotcherr -lmpiblacs -lmpiblacsCinit -lscalapack -lblas -llapack
-latlas -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil
-lgfortranbegin -lgfortran -lm -lpthread
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/driver/Makefile
config.status: creating Makefile.export.zoltan
config.status: creating example/lib/Makefile
config.status: creating example/Makefile
config.status: creating example/C/Makefile
config.status: creating example/C/sparse_matrix/Makefile
config.status: creating example/CPP/Makefile
config.status: creating siMPI/Makefile
config.status: creating siMPI/pyMPI/Makefile
config.status: creating siMPI/pyMPI/siMPI/Makefile
config.status: creating src/include/Zoltan_config.h
config.status: executing depfiles commands
---------------------------------------------
Finished Running Zoltan Configure Script
---------------------------------------------



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