[Trilinos-Users] Trilinos-Users Digest, Vol 37, Issue 20

Mon Sep 15 12:02:45 MDT 2008

Have a pleasant trip.

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Subject: Trilinos-Users Digest, Vol 37, Issue 20

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Today's Topics:

   1. Re: Installation; Better situation but another Problem
      (Thornquist, Heidi K)

----------------------------------------------------------------------

Message: 1
Date: Mon, 15 Sep 2008 11:20:12 -0600
From: "Thornquist, Heidi K" <hkthorn at sandia.gov>
Subject: Re: [Trilinos-Users] Installation; Better situation but
	another Problem
To: amjad ali <amjad11 at gmail.com>,
	"trilinos-users at software.sandia.gov"
	<trilinos-users at software.sandia.gov>
Message-ID: <C4F3F56C.2331%hkthorn at sandia.gov>
Content-Type: text/plain; charset="iso-8859-1"

Hi AA,

I don't know if you've already resolved your issue, but my
recommendation would be to use the mpi
compiler wrappers (mpiCC, mpicc, mpif77) generated by Open MPI, which
are in the /home/openmpi-1.2.6/bin
directory, instead of directly calling the compiler (g++, gcc, gfortran)
and trying to pass in the mpi library
using the path and -lmpi.  The wrappers are there to ensure that you get
all your paths correct.  Otherwise,
if you have another version of Open MPI or MPICH installed on your
machine, you may unintentionally compile
against it.

So, if you haven't found your problem, I would suggest adding
CC=/home/openmpi-1.2.6/bin/mpicc,
CXX=/home/openmpi-1.2.6/bin/mpiCC, and
F77=/home/openmpi-1.2.6/bin/mpif77 to your configure script.

Thanks,
Heidi

On 9/15/08 3:39 AM, "amjad ali" <amjad11 at gmail.com> wrote:

Hi,

I also ran
1) make  (It runs fine)
2) make  install (It runs fine)
3) make example  (it got stuck saying some problem related to MPI)

regards,
AA,

Please see following:
[root at localhost LINUX_MPI]# make examples
cd packages && make examples
make[1]: Entering directory
`/home/amjad/softwares/trilinos-8.0.8/LINUX_MPI/packages'
../../config/makeall make examples teuchos rtop kokkos epetra triutils
 epetraext thyra isorropia aztecoo galeri  amesos ifpack   belos
anasazi  ml moertel  stratimikos meros sacado nox rythmos  new_package
moocho  didasko  external

Making target examples in
/home/amjad/softwares/trilinos-8.0.8/LINUX_MPI/packages/teuchos

make[2]: Entering directory
`/home/amjad/softwares/trilinos-8.0.8/LINUX_MPI/packages/teuchos'

Now building teuchos examples.

cd ./example && make
make[3]: Entering directory
`/home/amjad/softwares/trilinos-8.0.8/LINUX_MPI/packages/teuchos/example
'
Making all in BLAS
make[4]: Entering directory
`/home/amjad/softwares/trilinos-8.0.8/LINUX_MPI/packages/teuchos/example
/BLAS'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory
`/home/amjad/softwares/trilinos-8.0.8/LINUX_MPI/packages/teuchos/example
/BLAS'
Making all in CommandLineProcessor
make[4]: Entering directory
`/home/amjad/softwares/trilinos-8.0.8/LINUX_MPI/packages/teuchos/example
/CommandLineProcessor'
g++  -g -O2  -L/home/openmpi-1.2.6/lib -o CLP_example.exe cxx_main.o
-L/home/openmpi-1.2.6/lib
-L/home/amjad/softwares/trilinos-8.0.8/LINUX_MPI/packages/teuchos/src
-lteuchos -lmpi
/home/amjad/softwares/petsc-2.3.3-p11/externalpackages/fblaslapack/linux
-gnu-openmpi/libflapack.a
/home/amjad/softwares/petsc-2.3.3-p11/externalpackages/fblaslapack/linux
-gnu-openmpi/libfblas.a
 -L/home/openmpi-1.2.6/lib -L/usr/lib/gcc/i386-redhat-linux/4.1.2
-L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.. -lmpi -lgfortranbegin
-lgfortran -lm
cxx_main.o: In function `MPI::Op::Init(void (*)(void const*, void*,
int, MPI::Datatype const&), bool)':
/home/openmpi-1.2.6/include/openmpi/ompi/mpi/cxx/op_inln.h:122:
undefined reference to `ompi_mpi_cxx_op_intercept'
cxx_main.o: In function `Intracomm':
/home/openmpi-1.2.6/include/openmpi/ompi/mpi/cxx/intracomm_inln.h:23:
undefined reference to `MPI::Comm::Comm()'
cxx_main.o: In function `Intracomm':
/home/openmpi-1.2.6/include/openmpi/ompi/mpi/cxx/intracomm.h:25:
undefined reference to `MPI::Comm::Comm()'
/home/openmpi-1.2.6/include/openmpi/ompi/mpi/cxx/intracomm.h:25:
undefined reference to `MPI::Comm::Comm()'
/home/openmpi-1.2.6/include/openmpi/ompi/mpi/cxx/intracomm.h:25:
undefined reference to `MPI::Comm::Comm()'
/home/openmpi-1.2.6/include/openmpi/ompi/mpi/cxx/intracomm.h:25:
undefined reference to `MPI::Comm::Comm()'
cxx_main.o:/home/openmpi-1.2.6/include/openmpi/ompi/mpi/cxx/intracomm.h:
25:
more undefined references to `MPI::Comm::Comm()' follow
cxx_main.o:(.rodata._ZTVN3MPI3WinE[vtable for MPI::Win]+0x14):
undefined reference to `MPI::Win::Set_errhandler(MPI::Errhandler
const&)'
cxx_main.o:(.rodata._ZTVN3MPI3WinE[vtable for MPI::Win]+0x24):
undefined reference to `MPI::Win::Free()'
cxx_main.o:(.rodata._ZTVN3MPI9IntercommE[vtable for
MPI::Intercomm]+0xd4): undefined reference to
`MPI::Comm::Set_errhandler(MPI::Errhandler const&)'
cxx_main.o:(.rodata._ZTVN3MPI9GraphcommE[vtable for
MPI::Graphcomm]+0xd4): undefined reference to
`MPI::Comm::Set_errhandler(MPI::Errhandler const&)'
cxx_main.o:(.rodata._ZTVN3MPI8CartcommE[vtable for
MPI::Cartcomm]+0xd4): undefined reference to
`MPI::Comm::Set_errhandler(MPI::Errhandler const&)'
cxx_main.o:(.rodata._ZTVN3MPI9IntracommE[vtable for
MPI::Intracomm]+0xd4): undefined reference to
`MPI::Comm::Set_errhandler(MPI::Errhandler const&)'
cxx_main.o:(.rodata._ZTVN3MPI4CommE[vtable for MPI::Comm]+0xd4):
undefined reference to `MPI::Comm::Set_errhandler(MPI::Errhandler
const&)'
cxx_main.o:(.rodata._ZTVN3MPI8DatatypeE[vtable for
MPI::Datatype]+0x3c): undefined reference to `MPI::Datatype::Free()'
collect2: ld returned 1 exit status
make[4]: *** [CLP_example.exe] Error 1
make[4]: Leaving directory
`/home/amjad/softwares/trilinos-8.0.8/LINUX_MPI/packages/teuchos/example
/CommandLineProcessor'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory
`/home/amjad/softwares/trilinos-8.0.8/LINUX_MPI/packages/teuchos/example
'
make[2]: *** [examples] Error 2
make[2]: Leaving directory
`/home/amjad/softwares/trilinos-8.0.8/LINUX_MPI/packages/teuchos'
Error, the make of target examples failed for the package !
make[1]: *** [examples] Error 2
make[1]: Leaving directory
`/home/amjad/softwares/trilinos-8.0.8/LINUX_MPI/packages'
make: *** [examples] Error 2
[root at localhost LINUX_MPI]#

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