[Trilinos-Users] Problems building with --enable-anasazi & --enable-pytrilinos
Bill Spotz
wfspotz at sandia.gov
Wed Oct 8 09:52:47 MDT 2008
Ted,
Is it only anasazi that fails? That is to say, all of the other
package's shared libraries build OK?
On Oct 8, 2008, at 10:26 AM, Ted Sume Nzuonkwelle wrote:
> Here is a work around for now.
>
> {serial,parallel} refers to serial or parallel build directories.
>
> Trilinos fails when trying to build the shared library libanasazi.so
> in
>
> /usr/local/builds/trilinos-9.0.0/{serial,parallel}/packages/anasazi/
> src.
>
> The line that fails to create the shared library looks like this,
>
> changing directory to ../../anasazi/src
> g++ -shared -Wl,-soname,libanasazi.so -o libanasazi.so *.o
> -L/usr/local/builds/trilinos-9.0.0/serial/packages/PyTrilinos/shared
> -L/usr/lib/gcc/x86_64-redhat-linux/4.3.0
> -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.3.0
> -L/usr/local/builds/trilinos-9.0.0/serial/packages/anasazi/epetra/src
> -lanasaziepetra
> -L/usr/local/builds/trilinos-9.0.0/serial/packages/epetra/src -lepetra
> -L/usr/local/builds/trilinos-9.0.0/serial/packages/teuchos/src -
> lteuchos
> -llapack -lblas -L/usr/lib64 -L/lib64 -L/usr/lib -lgfortranbegin
> -lgfortran -lm
> -L/usr/local/builds/trilinos-9.0.0/serial/packages/anasazi/src
> -lanasazi
>
> solution:
> -->cd /usr/local/builds/trilinos-9.0.0/{serial,parallel}/packages/
> anasazi/src
>
> -->g++ -shared -Wl,-soname,libanasazi.so -o libanasazi.so *.o
> -L/usr/local/builds/trilinos-9.0.0/serial/packages/PyTrilinos/shared
> -L/usr/lib/gcc/x86_64-redhat-linux/4.3.0
> -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.3.0
> -L/usr/local/builds/trilinos-9.0.0/serial/packages/anasazi/epetra/src
> -lanasaziepetra
> -L/usr/local/builds/trilinos-9.0.0/serial/packages/epetra/src -lepetra
> -L/usr/local/builds/trilinos-9.0.0/serial/packages/teuchos/src -
> lteuchos
> -llapack -lblas -L/usr/lib64 -L/lib64 -L/usr/lib -lgfortranbegin
> -lgfortran -lm
>
> --> mv or cp libanasazi.so
> to /usr/local/builds/trilinos-9.0.0/{serial,parallel}/packages/
> PyTrilinos/shared
>
> --> make
> --> make install.
>
> On Mon, 2008-10-06 at 08:53 -0600, Ted Sume Nzuonkwelle wrote:
>> On Mon, 2008-10-06 at 10:45 -0400, Bill Spotz wrote:
>>> Ted,
>>>
>>> I am not sure what is going on here. Try cutting and pasting the
>>> link
>>> line for building the anasazi shared library where it fails and then
>>> deleting the "-L/usr/local/builds/trilinos-9.0.0/serial/packages/
>>> anasazi/src -lanasazi" options. They should not be there and I do
>>> not
>>> know why they are.
>>
>> After deleting as recommended above, the shared library is created.
>> Build still fails with same error even running make after the anasazi
>> shared library is created.
>>
>> Will try to track down why those extra options appear at the end of
>> that
>> link line.
>>
>> - Ted
>>
>>>
>>> On Oct 1, 2008, at 9:40 PM, Ted Sume Nzuonkwelle wrote:
>>>> On Wed, 2008-10-01 at 19:30 -0400, Bill Spotz wrote:
>>>>> You are picking up a previously installed version of
>>>>> libanasazi.so:
>>>>>
>>>>> /usr/local/builds/trilinos-9.0.0/serial/packages/anasazi/src/
>>>>> libanasazi.so
>>>>
>>>> libanasazi.so referenced above, does not exist in that directory.
>>>>
>>>> I have just run through the build process again, with a clean
>>>> source
>>>> tree and a clean build directory, however the build fails with the
>>>> same
>>>> results as reported before.
>>>>
>>>>>
>>>>> You probably need to delete it or perform a "make uninstall"
>>>>> before
>>>>> building.
>>>>>
>>>>> On Oct 1, 2008, at 5:40 PM, Ted Sume Nzuonkwelle wrote:
>>>>>>
>>>>>> When i try to build with --enable-anasazi & --enable-
>>>>>> pytrilinos, my
>>>>>> build fails. If i drop either one of --enable-anasazi OR
>>>>>> --enable-pytrilinos, the build completes. Below is my configure
>>>>>> line.
>>>>>>
>>>>>> Any suggestions to resolve this will be greatly appreciated.
>>>>>>
>>>>>> (Build on Fedora 9 with GCC-4.3.0)
>>>>>>
>>>>>>
>>>>>>
>>>>>> ../configure --prefix=/usr/local/trilinos-9.0.0
>>>>>> --disable-default-packages --enable-pytrilinos --enable-amesos
>>>>>> --enable-ml --enable-aztecoo --enable-epetraext --enable-epetra
>>>>>> --enable-triutils --enable-teuchos --enable-ifpack --enable-
>>>>>> galeri
>>>>>> --enable-anasazi
>>>>>> --with-ldflags="-L/usr/lib/gcc/x86_64-redhat-linux/4.3.0
>>>>>> -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.3.0" FFLAGS=-fPIC
>>>>>> CFLAGS=-fPIC CXXFLAGS=-fPIC
>>>>>>
>>>>>> make
>>>>>>
>>>>>> Trilinos package ml subdirectory src built successfully.
>>>>>>
>>>>>> make[5]: Leaving directory
>>>>>> `/usr/local/builds/trilinos-9.0.0/serial/packages/ml/src'
>>>>>> make[4]: Leaving directory
>>>>>> `/usr/local/builds/trilinos-9.0.0/serial/packages/ml/src'
>>>>>> make[4]: Entering directory
>>>>>> `/usr/local/builds/trilinos-9.0.0/serial/packages/ml'
>>>>>> Trilinos package ml built
>>>>>> successfully
>>>>>> make[4]: Leaving directory
>>>>>> `/usr/local/builds/trilinos-9.0.0/serial/packages/ml'
>>>>>> make[3]: Leaving directory
>>>>>> `/usr/local/builds/trilinos-9.0.0/serial/packages/ml'
>>>>>> Making all in
>>>>>> PyTrilinos
>>>>>> make[3]: Entering directory
>>>>>> `/usr/local/builds/trilinos-9.0.0/serial/packages/PyTrilinos'
>>>>>> Making all in
>>>>>> shared
>>>>>> make[4]: Entering directory
>>>>>> `/usr/local/builds/trilinos-9.0.0/serial/packages/PyTrilinos/
>>>>>> shared'
>>>>>> /usr/bin/python ../../../../packages/PyTrilinos/shared/setup.py
>>>>>> build
>>>>>>
>>>>>> Extracting Makefile variables ... done
>>>>>>
>>>>>> Linking anasazi as a shared library
>>>>>> changing directory to ../../anasazi/src
>>>>>> g++ -shared -Wl,-soname,libanasazi.so -o libanasazi.so *.o
>>>>>> -L/usr/local/builds/trilinos-9.0.0/serial/packages/PyTrilinos/
>>>>>> shared
>>>>>> -L/usr/lib/gcc/x86_64-redhat-linux/4.3.0
>>>>>> -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.3.0
>>>>>> -L/usr/local/builds/trilinos-9.0.0/serial/packages/anasazi/
>>>>>> epetra/
>>>>>> src
>>>>>> -lanasaziepetra
>>>>>> -L/usr/local/builds/trilinos-9.0.0/serial/packages/epetra/src -
>>>>>> lepetra
>>>>>> -L/usr/local/builds/trilinos-9.0.0/serial/packages/teuchos/src -
>>>>>> lteuchos
>>>>>> -llapack -lblas -L/usr/lib64 -L/lib64 -L/usr/lib -lgfortranbegin
>>>>>> -lgfortran -lm
>>>>>> -L/usr/local/builds/trilinos-9.0.0/serial/packages/anasazi/src
>>>>>> -lanasazi
>>>>>> /usr/local/builds/trilinos-9.0.0/serial/packages/anasazi/src/
>>>>>> libanasazi.so: file not recognized: File truncated
>>>>>> collect2: ld returned 1 exit
>>>>>> status
>>>>>> Traceback (most recent call
>>>>>> last):
>>>>>> File "../../../../packages/PyTrilinos/shared/setup.py", line
>>>>>> 178, in
>>>>>> <module>
>>>>>> main(command,
>>>>>> destdir)
>>>>>> File "../../../../packages/PyTrilinos/shared/setup.py", line
>>>>>> 147, in
>>>>>> main
>>>>>>
>>>>>> builder.buildShared()
>>>>>> File "../util/SharedUtils.py", line 331, in
>>>>>> buildShared
>>>>>> File "../util/SharedUtils.py", line 97, in
>>>>>> runCommand
>>>>>> RuntimeError: Exit status =
>>>>>> 256
>>>>>> make[4]: *** [package] Error
>>>>>> 1
>>>>>> make[4]: Leaving directory
>>>>>> `/usr/local/builds/trilinos-9.0.0/serial/packages/PyTrilinos/
>>>>>> shared'
>>>>>> make[3]: *** [all-recursive] Error
>>>>>> 1
>>>>>> make[3]: Leaving directory
>>>>>> `/usr/local/builds/trilinos-9.0.0/serial/packages/PyTrilinos'
>>>>>> make[2]: *** [all-recursive] Error
>>>>>> 1
>>>>>> make[2]: Leaving directory
>>>>>> `/usr/local/builds/trilinos-9.0.0/serial/packages'
>>>>>> make[1]: *** [all-recursive] Error
>>>>>> 1
>>>>>> make[1]: Leaving directory
>>>>>> `/usr/local/builds/trilinos-9.0.0/serial'
>>>>>> make: *** [all] Error 2
>>>>>>
>>>>>>
>>>>>> Ted Sume Nzuonkwelle
>>>>>>
>>>>>>
>>>>>>
>>>>>> _______________________________________________
>>>>>> Trilinos-Users mailing list
>>>>>> Trilinos-Users at software.sandia.gov
>>>>>> http://software.sandia.gov/mailman/listinfo/trilinos-users
>>>>>
>>>>> ** Bill Spotz **
>>>>> ** Sandia National Laboratories Voice: (505)845-0170 **
>>>>> ** P.O. Box 5800 Fax: (505)284-0154 **
>>>>> ** Albuquerque, NM 87185-0370 Email: wfspotz at sandia.gov **
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> Trilinos-Users mailing list
>>>> Trilinos-Users at software.sandia.gov
>>>> http://software.sandia.gov/mailman/listinfo/trilinos-users
>>>
>>> ** Bill Spotz **
>>> ** Sandia National Laboratories Voice: (505)845-0170 **
>>> ** P.O. Box 5800 Fax: (505)284-0154 **
>>> ** Albuquerque, NM 87185-0370 Email: wfspotz at sandia.gov **
>>>
>>>
>>>
>>>
>>>
>
>
> _______________________________________________
> Trilinos-Users mailing list
> Trilinos-Users at software.sandia.gov
> http://software.sandia.gov/mailman/listinfo/trilinos-users
** Bill Spotz **
** Sandia National Laboratories Voice: (505)845-0170 **
** P.O. Box 5800 Fax: (505)284-0154 **
** Albuquerque, NM 87185-0370 Email: wfspotz at sandia.gov **
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