[Trilinos-Users] FW: compile error

Mon Nov 17 20:56:58 MST 2008

Forwarding...

------ Forwarded Message
From: Kurtis Nusbaum <klnusbaum at gmail.com>
Date: Mon, 17 Nov 2008 19:18:44 -0700
To: "Willenbring, James M" <jmwille at sandia.gov>, <trilinos-users-bounces at software.sandia.gov>
Conversation: [Trilinos-Users] compile error
Subject: Re: [Trilinos-Users] compile error

Thanks for the quick response. I tried enabling epetraext, but now I'm getting this problem:
Now building teuchos examples.

cd ./example && make
make[4]: Entering directory `/net/home/f07/klnusbau/tarfiles/trilinos-9.0.1/build1/packages/teuchos/example'
Making all in BLAS
make[5]: Entering directory `/net/home/f07/klnusbau/tarfiles/trilinos-9.0.1/build1/packages/teuchos/example/BLAS'
g++ -DHAVE_CONFIG_H -I. -I../../src -I../../../../../packages/teuchos/example/BLAS    -I../../../../../packages/teuchos/src -g -O2 -MT BLAS_example-cxx_main.o -MD -MP -MF .deps/BLAS_example-cxx_main.Tpo -c -o BLAS_example-cxx_main.o `test -f '../../../../../packages/teuchos/example/BLAS/cxx_main.cpp' || echo '../../../../../packages/teuchos/example/BLAS/'`../../../../../packages/teuchos/example/BLAS/cxx_main.cpp
mv -f .deps/BLAS_example-cxx_main.Tpo .deps/BLAS_example-cxx_main.Po
g++ -I../../../../../packages/teuchos/src -g -O2   -o BLAS_example.exe BLAS_example-cxx_main.o ../../src/libteuchos.a  -llapack -lblas -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6 -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../.. -L/lib/../lib64 -L/usr/lib/../lib64 -lfrtbegin -lg2c -lm
BLAS_example-cxx_main.o: In function `operator<< <char, std::char_traits<char>, std::allocator<char> >':
/usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../include/c++/4.3.0/bits/basic_string.h:2425: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
BLAS_example-cxx_main.o: In function `operator<< <std::char_traits<char> >':
/usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../include/c++/4.3.0/ostream:517: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../include/c++/4.3.0/ostream:517: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../include/c++/4.3.0/ostream:517: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
BLAS_example-cxx_main.o: In function `std::basic_ostream<char, std::char_traits<char> >::operator<<(double)':
/usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../include/c++/4.3.0/ostream:214: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::basic_ostream<char, std::char_traits<char> >::_M_insert<double>(double)'
collect2: ld returned 1 exit status
make[5]: *** [BLAS_example.exe] Error 1
make[5]: Leaving directory `/net/home/f07/klnusbau/tarfiles/trilinos-9.0.1/build1/packages/teuchos/example/BLAS'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory `/net/home/f07/klnusbau/tarfiles/trilinos-9.0.1/build1/packages/teuchos/example'
make[3]: *** [examples] Error 2
make[3]: Leaving directory `/net/home/f07/klnusbau/tarfiles/trilinos-9.0.1/build1/packages/teuchos'
Error, the make of target examples failed for the package !
make[2]: *** [examples] Error 2
make[2]: Leaving directory `/net/home/f07/klnusbau/tarfiles/trilinos-9.0.1/build1/packages'
make[1]: *** [everything] Error 2
make[1]: Leaving directory `/net/home/f07/klnusbau/tarfiles/trilinos-9.0.1/build1/packages'
make: *** [everything] Error 2
78.718u 28.167s 4:39.99 38.1%    0+0k 350832+1934672io 8pf+0w

-Kurtis

On Mon, Nov 17, 2008 at 12:42 PM, James Willenbring <jmwille at sandia.gov> wrote:
Kurtis,

It looks like the optional dependency tracking may not be working quite right.  Try using --enable-epetraext.

Jim

________________________________

From: trilinos-users-bounces at software.sandia.gov [mailto:trilinos-users-bounces at software.sandia.gov] On Behalf Of Kurtis Nusbaum
Sent: Monday, November 17, 2008 2:20 PM
To: Trilinos-Users at software.sandia.gov
Subject: [Trilinos-Users] compile error

I'm trying to follow the instructions in the trilinos 9.0 tutorial for compiling and installing trilinos. This is the configuration I'm using:

../configure --prefix=/net/home/f07/klnusbau/trilinos9/tutorialBuild \
--disable-default-packages \
--enable-teuchos \
--enable-epetra \
--enable-aztecoo \
--enable-triutils \
--enable-amesos \
--enable-ifpack \
--enable-ml \
--enable-nox \
--enable-nox-epetra \
--enable-stratimikos \
--enable-didasko  | tee configure_Tutorial.log

After configuring, and issuing the "make everything" command trilinos starts building. However, during the build process I encounter this error:

Factory.cpp:41:39: error: EpetraExt_ProductOperator.h: No such file or directory
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp: In member function 'void Thyra::AztecOOLinearOpWithSolveFactory::initializeOp_impl(const Teuchos::RCP<const Thyra::LinearOpSourceBase<double, double> >&, const Teuchos::RCP<const Thyra::PreconditionerBase<double, double> >&, const Teuchos::RCP<const Thyra::LinearOpSourceBase<double, double> >&, bool, Thyra::LinearOpWithSolveBase<double, double>*) const':
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:444: error: 'EpetraExt' has not been declared
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:444: error: expected initializer before 'PO'
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:808: error: 'PO' has not been declared
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:809: error: expected `;' before 'epetraOpsApplyMode'
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:816: error: 'epetraOpsApplyMode' was not declared in this scope
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:816: error: 'PO' has not been declared
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:824: error: expected type-specifier before 'PO'
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:824: error: expected `)' before 'PO'
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:851: error: 'epetraOpsApplyMode' was not declared in this scope
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:851: error: 'PO' has not been declared
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:858: error: expected type-specifier before 'PO'
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:858: error: expected `)' before 'PO'
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:959: error: 'PO' has not been declared
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:960: error: expected `;' before 'epetraOpsApplyMode'
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:973: error: expected type-specifier before 'PO'
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:973: error: expected `)' before 'PO'
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:1003: error: expected type-specifier before 'PO'
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:1003: error: expected `)' before 'PO'
/home/f07/klnusbau/tarfiles/trilinos-9.0.1/build1/packages/teuchos/../../../packages/teuchos/src/Teuchos_RCP.hpp: In constructor 'Teuchos::RCP<T>::RCP(const Teuchos::RCP<T2>&) [with T2 = int, T = const Epetra_Operator]':
../../../../../../packages/stratimikos/adapters/aztecoo/src/Thyra_AztecOOLinearOpWithSolveFactory.cpp:824:  instantiated from here
/home/f07/klnusbau/tarfiles/trilinos-9.0.1/build1/packages/teuchos/../../../packages/teuchos/src/Teuchos_RCP.hpp:85: error: cannot convert 'int*' to 'const Epetra_Operator*' in initialization
make[6]: *** [Thyra_AztecOOLinearOpWithSolveFactory.o] Error 1
make[6]: Leaving directory `/net/home/f07/klnusbau/tarfiles/trilinos-9.0.1/build1/packages/stratimikos/adapters/aztecoo/src'
make[5]: *** [all-recursive] Error 1
make[5]: Leaving directory `/net/home/f07/klnusbau/tarfiles/trilinos-9.0.1/build1/packages/stratimikos/adapters/aztecoo'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory `/net/home/f07/klnusbau/tarfiles/trilinos-9.0.1/build1/packages/stratimikos/adapters'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/net/home/f07/klnusbau/tarfiles/trilinos-9.0.1/build1/packages/stratimikos'
make[2]: *** [all-recursive] Error 1
make[1]: *** [everything] Error 2

Does anyone have any suggestions as how to rectify this problem. Here's my system information:

Fedora Core 9
Linux Kernel 2.6.26.5-45.fc9.x86_64
1.9 Gib Ram
Intel Core 2 Duo 6600 2.4 Ghz

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