[Trilinos-Users] problem with make #2

[Bill Spotz]

PyTrilinos is my package, but unfortunately, I'm not in any sort of  
position to track this down for the next couple of weeks.

This may be a 32/64 bit issue.  Is your python compiled as 64 bit?

On May 31, 2008, at 5:19 PM, Tudor Buican wrote:
> Hi, Jim.
>
> I added the Fortran -fPIC and upgraded to SWIG 1.3.31, and things have
> moved much farther but not all the way to completion. Here's my  
> current
> configure command:
>
> ..............................................
> ../configure \
>  --cache-file=config.cache \
>  --prefix=/home/tudor/trilinos-install/LINUX_MPI \
>  --with-gnumake \
>  --with-fflags="-fPIC -O3" \
>  --with-cflags="-fPIC -ansi -Wall" \
>  --with-cxxflags="-fPIC -ansi -Wall -ftrapv -Wconversion" \
>  --enable-mpi --with-mpi-compilers \
>  --with-mpi-libs=-lmpi \
>  --with-flibs="-lg2c" \
>  --with-libs=-L/home/tudor/libraries/trilinos_3pl/LINUX_MPI/lib \
>  --enable-examples \
>  --enable-tests \
>  --enable-pytrilinos \
>  --enable-teuchos \
>  --enable-epetra \
>  --enable-triutils \
>  --enable-aztecoo \
>  --enable-ifpack \
>  --disable-ifpack-metis \
>  --enable-ifpack-sparskit \
>  --enable-epetraext \
>  --enable-amesos \
>  --enable-amesos-lapack \
>  --enable-amesos-klu \
>  --disable-amesos-umfpack \
>  --disable-amesos-dscpack \
>  --enable-didasko \
>  --enable-ml \
>  --enable-anasazi \
>  --enable-nox \
>  --enable-nox-epetra  | tee configure_LINUX_MPI.log
> ..................................................
>
> and here's where "make everything" has a problem now:
>
> ..................................................
> Converting PyTrilinos to a shared library
> changing directory to ../src
> mpicxx -shared -Wl,-soname,libpytrilinos.so -o libpytrilinos.so *.o -
> L/home/tudor/trilinos-8.0.4/LINUX_MPI-ompi11-
> pytrilinos/packages/PyTrilinos/shared -L/home/tudor/trilinos-
> install/LINUX_MPI-ompi11-pytrilinos/packages/epetra/src -lepetra -
> L/home/tudor/trilinos-install/LINUX_MPI-ompi11-
> pytrilinos/packages/teuchos/src -lteuchos -
> L/home/tudor/libraries/trilinos_3pl/LINUX_MPI/lib -L/usr/lib64/ 
> openmpi -
> L/usr/lib/gcc/x86_64-redhat-linux/4.1.1 -L/usr/lib64 -L/lib64 - 
> llapack -
> lblas -lmpi -lorte -lopal -ldl -lnsl -lutil -lgfortranbegin - 
> lgfortran -
> lm -lpthread
> /usr/bin/ld: Epetra_NumPyFEVector.o: relocation R_X86_64_32S against
> `PyBool_Type' can not be used when making a shared object; recompile
> with -fPIC
> Epetra_NumPyFEVector.o: could not read symbols: Bad value
> collect2: ld returned 1 exit status
> Traceback (most recent call last):
>  File "../../../../packages/PyTrilinos/shared/setup.py", line 172,  
> in ?
>    main()
>  File "../../../../packages/PyTrilinos/shared/setup.py", line 148, in
> main
>    builder.buildShared()
>  File "../util/SharedUtils.py", line 457, in buildShared
>    SharedTrilinosBuilder.buildShared(self)
>  File "../util/SharedUtils.py", line 312, in buildShared
>    runCommand(self.linkCmd)
>  File "../util/SharedUtils.py", line 97, in runCommand
>    if status: raise RuntimeError, "Exit status = %d" % status
> RuntimeError: Exit status = 256
> make[4]: *** [package] Error 1
> ............................................................
>
> I would imagine Epetra_NumPyFEVector.cpp would have been compiled  
> with -
> fPIC. Do you have any suggestions? (BTW, I'm using python-2.3.4.)
>
> Thanks again.
> -Tudor
>
> --
> Tudor N. Buican, PhD
> Managing Member
> SEA LLC
> phone: 505-271-9925, 505-818-7303
> fax: 505-271-9925
> email: tudor at timb.com
>
>
>
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> Trilinos-Users at software.sandia.gov
> http://software.sandia.gov/mailman/listinfo/trilinos-users

** Bill Spotz                                              **
** Sandia National Laboratories  Voice: (505)845-0170      **
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