[Trilinos-Users] error with --enable-python

[John Pye]

Hi Bill,

Found some time to follow up on your suggestions with Trilinos...

Bill Spotz wrote:
> John,
>
> This problem stems from the fact that we cannot test all combinations
> of enabled and disabled packages, because the numbers get to be too
> huge. A quick fix would be to delete line 506 from
>
> packages/ml/python/src/Makefile
>
> in your build directory. A more sturdy solution would be to add
> --enable-galeri to your configure invocation script. (I suspect you
> may have to also add --enable-amesos.)
>
> In the next release, the python wrappers are removed from the
> individual packages and are all contained in the PyTrilinos package.
> This makes these python-related configuration issues easier to handle.
> In fact, I have verified that this particular problem does not occur
> in the release scheduled for August.

I tried your suggestion and I now get another error. In this case the
error shows up on Fedora 7 on a 64 bit machine:

|/usr/bin/ld:
/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos/src/libteuchos.a(Teuchos_ParameterEntry.o):
relocation R_X86_64_32 against `a local symbol' can not be used when
making a shared object; recompile with -fPIC
/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos/src/libteuchos.a:
could not read symbols: Bad value
collect2: ld returned 1 exit status|

There is a bit more context below. As before you can inspect my build
results at
http://build.opensuse.org/package/show?package=trilinos&project=home%3Ajdpipe

Cheers
JP


------8<----
|
Trilinos package teuchos subdirectory example built successfully.

make[5]: Leaving directory
`/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos/example'
make[4]: Leaving directory
`/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos/example'
Making all in python
make[4]: Entering directory
`/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos/python'
Making all in src
make[5]: Entering directory
`/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos/python/src'
if /usr/bin/swig -c++ -python
-I/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos/src
-I/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos/src -MMD -MF
".deps/Teuchos.Tpi" -o Teuchos_wrap.cpp Teuchos.i; \
then mv -f ".deps/Teuchos.Tpi" ".deps/Teuchos.Pi"; else rm -f
".deps/Teuchos.Tpi"; exit 1; fi
Creating directory build/temp.linux-x86_64-2.5
mkdir -p build/temp.linux-x86_64-2.5
/usr/bin/python ./setup.py build
running build
running build_py
creating build/lib.linux-x86_64-2.5
creating build/lib.linux-x86_64-2.5/PyTrilinos
copying ./Teuchos.py -> build/lib.linux-x86_64-2.5/PyTrilinos
copying ./__init__.py -> build/lib.linux-x86_64-2.5/PyTrilinos
running build_ext
building 'PyTrilinos._Teuchos' extension
g++ -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
-fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic
-D_GNU_SOURCE -fPIC -O2 -g -fPIC -DHAVE_CONFIG_H=1 -I.
-I/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos/src
-I/usr/include/python2.5 -c Teuchos_wrap.cpp -o
build/temp.linux-x86_64-2.5/Teuchos_wrap.o -O2 -g
Teuchos_PythonParameter.hpp: In function 'bool
Teuchos::setPythonParameter(Teuchos::ParameterList&, const std::string&,
PyObject*)':
Teuchos_PythonParameter.hpp:98: warning: dereferencing type-punned
pointer will break strict-aliasing rules
Teuchos_wrap.cpp: In function 'int SWIG_AsPtr_std_string(PyObject*,
std::string**)':
Teuchos_wrap.cpp:3066: warning: dereferencing type-punned pointer will
break strict-aliasing rules
Teuchos_wrap.cpp: In function 'int SWIG_AsVal_bool(PyObject*, bool*)':
Teuchos_wrap.cpp:3078: warning: dereferencing type-punned pointer will
break strict-aliasing rules
Teuchos_wrap.cpp:3081: warning: dereferencing type-punned pointer will
break strict-aliasing rules
g++ -pthread -shared -O2 -g build/temp.linux-x86_64-2.5/Teuchos_wrap.o
-L/usr/src/redhat/BUILD/trilinos-7.0.8/packages/PyTrilinos/src
-L/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos/src
-L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib64 -L/lib64
-L/usr/lib/python2.5/config -lteuchos -llapack -lblas -lgfortranbegin
-lgfortran -lm -lgcc_s -lpython2.5 -o
build/lib.linux-x86_64-2.5/PyTrilinos/_Teuchos.so
/usr/bin/ld:
/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos/src/libteuchos.a(Teuchos_ParameterEntry.o):
relocation R_X86_64_32 against `a local symbol' can not be used when
making a shared object; recompile with -fPIC
/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos/src/libteuchos.a:
could not read symbols: Bad value
collect2: ld returned 1 exit status
error: command 'g++' failed with exit status 1
make[5]: *** [build] Error 1
make[5]: Leaving directory
`/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos/python/src'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory
`/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos/python'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory
`/usr/src/redhat/BUILD/trilinos-7.0.8/packages/teuchos'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/usr/src/redhat/BUILD/trilinos-7.0.8/packages'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/usr/src/redhat/BUILD/trilinos-7.0.8'
make: *** [all] Error 2
error: Bad exit status from /var/tmp/rpm-tmp.3924 (%build)


|------8<----
>
> On Jul 22, 2007, at 8:28 PM, John Pye wrote:
>
>> Hi all
>>
>> I get an error when compiling trilinos with the following configure
>> command:
>>
>>
>> %configure \
>> F77=%{f77} \
>> CC="%{?ccache} gcc" \
>> CXX="%{?ccache} g++" \
>> --with-gnumake \
>> --disable-new_package \
>> --enable-moocho \
>> --enable-thyra \
>> --enable-python
>> make
>>
>>
>> Here is the error:|
>>
>>
>> make[4]: Leaving directory
>> `/usr/src/redhat/BUILD/trilinos-7.0.8/packages/ml/doc'
>> Making all in python
>> make[4]: Entering directory
>> `/usr/src/redhat/BUILD/trilinos-7.0.8/packages/ml/python'
>> Making all in src
>> make[5]: Entering directory
>> `/usr/src/redhat/BUILD/trilinos-7.0.8/packages/ml/python/src'
>> Makefile:506: ../../../galeri/Makefile.export.galeri: No such file or
>> directory
>> make[5]: *** No rule to make target
>> `../../../galeri/Makefile.export.galeri'. Stop.
>> make[5]: Leaving directory
>> `/usr/src/redhat/BUILD/trilinos-7.0.8/packages/ml/python/src'
>> make[4]: *** [all-recursive] Error 1
>> make[4]: Leaving directory
>> `/usr/src/redhat/BUILD/trilinos-7.0.8/packages/ml/python'
>> make[3]: *** [all-recursive] Error 1
>> make[3]: Leaving directory
>> `/usr/src/redhat/BUILD/trilinos-7.0.8/packages/ml'
>> make[2]: *** [all-recursive] Error 1
>> make[2]: Leaving directory
>> `/usr/src/redhat/BUILD/trilinos-7.0.8/packages'
>> make[1]: *** [all-recursive] Error 1
>> make[1]: Leaving directory `/usr/src/redhat/BUILD/trilinos-7.0.8'
>> make: *** [all] Error 2
>> error: Bad exit status from /var/tmp/rpm-tmp.93082 (%build)
>>
>>
>> |
>> |The full build log is available at
>> http://build.opensuse.org/package/live_build_log?arch=i586&repository=Fedora_7&package=trilinos&project=home%3Ajdpipe
>>
>> (registration may be required though).
>> |||
>>
>> ||
>>
>> |
>> Cheers
>> JP
>>
>> |
>>
>> _______________________________________________
>> Trilinos-Users mailing list
>> Trilinos-Users at software.sandia.gov
>> http://software.sandia.gov/mailman/listinfo/trilinos-users
>
> ** Bill Spotz **
> ** Sandia National Laboratories Voice: (505)845-0170 **
> ** P.O. Box 5800 Fax: (505)284-5451 **
> ** Albuquerque, NM 87185-0370 Email: wfspotz at sandia.gov **
>
>
> _______________________________________________
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