[Trilinos-Users] Fwd: problem with hdf5 in epetra_ext

Kurt Stokbro kurt.stokbro at gmail.com
Thu Dec 13 10:09:25 MST 2007


I cannot compile the hdf5 library.
I get the following errors:
g++ -DHAVE_CONFIG_H -I.
-I/home/kurt/src/trilinos/trilinos-8.0.4/packages/epetraext/src
-I/home/kurt/src/trilinos/trilinos-8.0.4/packages/epetraext/src/block
-I/home/kurt/src/trilinos/trilinos-8.0.4/packages/epetraext/src/btf
-I/home/kurt/src/trilinos/trilinos-8.0.4/packages/epetraext/src/coloring
-I/home/kurt/src/trilinos/trilinos-8.0.4/packages/epetraext/src/distdir
-I/home/kurt/src/trilinos/trilinos-8.0.4/packages/epetraext/src/inout
-I/home/kurt/src/trilinos/trilinos-8.0.4/packages/epetraext/src/matlab
-I/home/kurt/src/trilinos/trilinos-8.0.4/packages/epetraext/src/model_evaluator
-I/home/kurt/src/trilinos/trilinos-8.0.4/packages/epetraext/src/transform
-I/home/kurt/src/trilinos/trilinos-8.0.4/packages/epetraext/src/zoltan
-I/home/kurt/src/trilinos/trilinos-8.0.4/packages/epetra/src
-I/home/kurt/src/trilinos/trilinos-8.0.4/packages/teuchos/src
-I/home/kurt/src/trilinos/trilinos-8.0.4/packages/triutils/src
-I/usr/include   -ansi -Wall -ftrapv -pedantic -Wconversion -g -O2 -MT
EpetraExt_HDF5.o -MD -MP -MF .deps/EpetraExt_HDF5.Tpo -c -o
EpetraExt_HDF5.o `test -f './inout/EpetraExt_HDF5.cpp' || echo
'./'`./inout/EpetraExt_HDF5.cpp

'`./inout/EpetraExt_HDF5.cpp
./inout/EpetraExt_HDF5.h:576: error: extra ';'
./inout/EpetraExt_HDF5.cpp: In member function 'void
EpetraExt::HDF5::Create(std::string)':
./inout/EpetraExt_HDF5.cpp:239: error: 'H5Pset_fapl_mpio' was not
declared in this scope
./inout/EpetraExt_HDF5.cpp: In member function 'bool
EpetraExt::HDF5::IsContained(std::string)':
./inout/EpetraExt_HDF5.cpp:287: warning: unused variable 'idx_f'
./inout/EpetraExt_HDF5.cpp: In member function 'void
EpetraExt::HDF5::Read(const std::string&, Epetra_BlockMap*&)':
./inout/EpetraExt_HDF5.cpp:341: warning: unused variable 'NumMyPoints'
./inout/EpetraExt_HDF5.cpp: In member function 'void
EpetraExt::HDF5::Read(const std::string&, Epetra_MultiVector*&)':
./inout/EpetraExt_HDF5.cpp:999: error: 'H5Pset_dxpl_mpio' was not
declared in this scope
./inout/EpetraExt_HDF5.cpp: In member function 'void
EpetraExt::HDF5::Read(const std::string&, const std::string&,
std::string&)':
./inout/EpetraExt_HDF5.cpp:1392: warning: unused variable 'typesize_id'
./inout/EpetraExt_HDF5.cpp: In member function 'void
EpetraExt::HDF5::Write(const std::string&, const std::string&, int,
int, int, const void*)':
./inout/EpetraExt_HDF5.cpp:1504: error: 'H5Pset_dxpl_mpio' was not
declared in this scope
make[5]: *** [EpetraExt_HDF5.o] Error 1

I fixed the error with the extra ; but the other errors still persists.

is there a patch to this error?

kurt



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